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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:NRP1-ATE1 (FusionGDB2 ID:60340) |
Fusion Gene Summary for NRP1-ATE1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: NRP1-ATE1 | Fusion gene ID: 60340 | Hgene | Tgene | Gene symbol | NRP1 | ATE1 | Gene ID | 8829 | 11101 |
| Gene name | neuropilin 1 | arginyltransferase 1 | |
| Synonyms | BDCA4|CD304|NP1|NRP|VEGF165R | - | |
| Cytomap | 10p11.22 | 10q26.13 | |
| Type of gene | protein-coding | protein-coding | |
| Description | neuropilin-1transmembrane receptorvascular endothelial cell growth factor 165 receptor | arginyl-tRNA--protein transferase 1R-transferase 1arginine-tRNA--protein transferase 1arginyl-tRNA-protein transferase | |
| Modification date | 20200322 | 20200313 | |
| UniProtAcc | O14786 | O95260 | |
| Ensembl transtripts involved in fusion gene | ENST00000265371, ENST00000374816, ENST00000374821, ENST00000374822, ENST00000374823, ENST00000374867, ENST00000395995, ENST00000432372, ENST00000374875, | ENST00000481784, ENST00000224652, ENST00000369040, ENST00000369043, ENST00000535655, ENST00000540606, ENST00000543447, | |
| Fusion gene scores | * DoF score | 13 X 9 X 6=702 | 11 X 10 X 8=880 |
| # samples | 14 | 18 | |
| ** MAII score | log2(14/702*10)=-2.32604420335959 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(18/880*10)=-2.28950661719499 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: NRP1 [Title/Abstract] AND ATE1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | NRP1(33619636)-ATE1(123549804), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | NRP1-ATE1 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | NRP1 | GO:0051894 | positive regulation of focal adhesion assembly | 24863063 |
| Fusion gene breakpoints across NRP1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across ATE1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | STAD | TCGA-CG-5721-01A | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
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Fusion Gene ORF analysis for NRP1-ATE1 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000265371 | ENST00000481784 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5CDS-intron | ENST00000374816 | ENST00000481784 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5CDS-intron | ENST00000374821 | ENST00000481784 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5CDS-intron | ENST00000374822 | ENST00000481784 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5CDS-intron | ENST00000374823 | ENST00000481784 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5CDS-intron | ENST00000374867 | ENST00000481784 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5CDS-intron | ENST00000395995 | ENST00000481784 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5CDS-intron | ENST00000432372 | ENST00000481784 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5UTR-3CDS | ENST00000374875 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5UTR-3CDS | ENST00000374875 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5UTR-3CDS | ENST00000374875 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5UTR-3CDS | ENST00000374875 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5UTR-3CDS | ENST00000374875 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5UTR-3CDS | ENST00000374875 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| 5UTR-intron | ENST00000374875 | ENST00000481784 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000265371 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000265371 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000265371 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000265371 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000265371 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000265371 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374816 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374816 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374816 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374816 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374816 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374816 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374821 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374821 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374821 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374821 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374821 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374821 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374822 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374822 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374822 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374822 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374822 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374822 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374823 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374823 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374823 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374823 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374823 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374823 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374867 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374867 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374867 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374867 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374867 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000374867 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000395995 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000395995 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000395995 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000395995 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000395995 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| Frame-shift | ENST00000395995 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| In-frame | ENST00000432372 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| In-frame | ENST00000432372 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| In-frame | ENST00000432372 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| In-frame | ENST00000432372 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| In-frame | ENST00000432372 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| In-frame | ENST00000432372 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000432372 | NRP1 | chr10 | 33619636 | - | ENST00000369043 | ATE1 | chr10 | 123549804 | - | 4351 | 795 | 451 | 1176 | 241 |
| ENST00000432372 | NRP1 | chr10 | 33619636 | - | ENST00000535655 | ATE1 | chr10 | 123549804 | - | 1834 | 795 | 451 | 1176 | 241 |
| ENST00000432372 | NRP1 | chr10 | 33619636 | - | ENST00000224652 | ATE1 | chr10 | 123549804 | - | 1664 | 795 | 451 | 1176 | 241 |
| ENST00000432372 | NRP1 | chr10 | 33619636 | - | ENST00000369040 | ATE1 | chr10 | 123549804 | - | 1591 | 795 | 451 | 1176 | 241 |
| ENST00000432372 | NRP1 | chr10 | 33619636 | - | ENST00000540606 | ATE1 | chr10 | 123549804 | - | 1473 | 795 | 451 | 1176 | 241 |
| ENST00000432372 | NRP1 | chr10 | 33619636 | - | ENST00000543447 | ATE1 | chr10 | 123549804 | - | 1306 | 795 | 451 | 1176 | 241 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000432372 | ENST00000369043 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - | 0.016672293 | 0.9833277 |
| ENST00000432372 | ENST00000535655 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - | 0.048821226 | 0.9511787 |
| ENST00000432372 | ENST00000224652 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - | 0.058922507 | 0.94107753 |
| ENST00000432372 | ENST00000369040 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - | 0.07650532 | 0.92349464 |
| ENST00000432372 | ENST00000540606 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - | 0.106041275 | 0.8939587 |
| ENST00000432372 | ENST00000543447 | NRP1 | chr10 | 33619636 | - | ATE1 | chr10 | 123549804 | - | 0.10737958 | 0.8926204 |
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Fusion Genomic Features for NRP1-ATE1 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for NRP1-ATE1 |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr10:33619636/chr10:123549804) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| NRP1 | ATE1 |
| FUNCTION: Cell-surface receptor involved in the development of the cardiovascular system, in angiogenesis, in the formation of certain neuronal circuits and in organogenesis outside the nervous system. Mediates the chemorepulsant activity of semaphorins (PubMed:9288753, PubMed:9529250, PubMed:10688880). Recognizes a C-end rule (CendR) motif R/KXXR/K on its ligands which causes cellular internalization and vascular leakage (PubMed:19805273). It binds to semaphorin 3A, the PLGF-2 isoform of PGF, the VEGF165 isoform of VEGFA and VEGFB (PubMed:9288753, PubMed:9529250, PubMed:10688880, PubMed:19805273). Coexpression with KDR results in increased VEGF165 binding to KDR as well as increased chemotaxis. Regulates VEGF-induced angiogenesis. Binding to VEGFA initiates a signaling pathway needed for motor neuron axon guidance and cell body migration, including for the caudal migration of facial motor neurons from rhombomere 4 to rhombomere 6 during embryonic development (By similarity). Regulates mitochondrial iron transport via interaction with ABCB8/MITOSUR (PubMed:30623799). {ECO:0000250|UniProtKB:P97333, ECO:0000269|PubMed:10688880, ECO:0000269|PubMed:19805273, ECO:0000269|PubMed:30623799, ECO:0000269|PubMed:9288753, ECO:0000269|PubMed:9529250}.; FUNCTION: [Isoform 2]: Binds VEGF-165 and may inhibit its binding to cells (PubMed:10748121, PubMed:26503042). May induce apoptosis by sequestering VEGF-165 (PubMed:10748121). May bind as well various members of the semaphorin family. Its expression has an averse effect on blood vessel number and integrity. {ECO:0000269|PubMed:10748121, ECO:0000269|PubMed:26503042}.; FUNCTION: (Microbial infection) Acts as a host factor for human coronavirus SARS-CoV-2 infection. Recognizes and binds to CendR motif RRAR on SARS-CoV-2 spike protein S1 which enhances SARS-CoV-2 infection. {ECO:0000269|PubMed:33082293, ECO:0000269|PubMed:33082294}. | FUNCTION: Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Does not arginylate cysteine residues (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000265371 | - | 3 | 18 | 147_265 | 82 | 924.0 | Domain | CUB 2 |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000265371 | - | 3 | 18 | 27_141 | 82 | 924.0 | Domain | CUB 1 |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000265371 | - | 3 | 18 | 645_811 | 82 | 924.0 | Domain | MAM |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374821 | - | 2 | 11 | 147_265 | 82 | 610.0 | Domain | CUB 2 |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374821 | - | 2 | 11 | 27_141 | 82 | 610.0 | Domain | CUB 1 |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374821 | - | 2 | 11 | 645_811 | 82 | 610.0 | Domain | MAM |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374822 | - | 2 | 12 | 147_265 | 82 | 645.0 | Domain | CUB 2 |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374822 | - | 2 | 12 | 27_141 | 82 | 645.0 | Domain | CUB 1 |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374822 | - | 2 | 12 | 645_811 | 82 | 645.0 | Domain | MAM |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374867 | - | 2 | 17 | 147_265 | 82 | 924.0 | Domain | CUB 2 |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374867 | - | 2 | 17 | 27_141 | 82 | 924.0 | Domain | CUB 1 |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374867 | - | 2 | 17 | 645_811 | 82 | 924.0 | Domain | MAM |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000265371 | - | 3 | 18 | 22_856 | 82 | 924.0 | Topological domain | Extracellular |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000265371 | - | 3 | 18 | 880_923 | 82 | 924.0 | Topological domain | Cytoplasmic |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374821 | - | 2 | 11 | 22_856 | 82 | 610.0 | Topological domain | Extracellular |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374821 | - | 2 | 11 | 880_923 | 82 | 610.0 | Topological domain | Cytoplasmic |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374822 | - | 2 | 12 | 22_856 | 82 | 645.0 | Topological domain | Extracellular |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374822 | - | 2 | 12 | 880_923 | 82 | 645.0 | Topological domain | Cytoplasmic |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374867 | - | 2 | 17 | 22_856 | 82 | 924.0 | Topological domain | Extracellular |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374867 | - | 2 | 17 | 880_923 | 82 | 924.0 | Topological domain | Cytoplasmic |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000265371 | - | 3 | 18 | 857_879 | 82 | 924.0 | Transmembrane | Helical |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374821 | - | 2 | 11 | 857_879 | 82 | 610.0 | Transmembrane | Helical |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374822 | - | 2 | 12 | 857_879 | 82 | 645.0 | Transmembrane | Helical |
| Hgene | NRP1 | chr10:33619636 | chr10:123549804 | ENST00000374867 | - | 2 | 17 | 857_879 | 82 | 924.0 | Transmembrane | Helical |
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Fusion Gene Sequence for NRP1-ATE1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >60340_60340_1_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000224652_length(transcript)=1664nt_BP=795nt GCAGGGTCTCTGGGAAAGACAGACAGACGGACGGGGAGAGCACTCGGAGGGAAAGTTGTTCCTCCCAGTCTCCTGTCAGGCAATTACAGA CACCCGGACCTCCCCTGGGCGCCAGCTCCGCGGCTCCAACGGGTCCAGAAACAAGCCGGATTTTTTTTTTTTCTTCCTGGAAATTGGCTT TGGTGTGTGTTGCCCTACCTCCCTCCTCCCCCTCCCACCCACAGCCCCCCCCCGGCCTTTTTTTTTTTTTTTTTTTTTTTTGAGACATGG CCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAGCCGGAGCTAAATGACAGGATGCAGGCGACTTGAGACAC AAAAAGAGAAGCGTTCCTCTCGGATCCAGGCATTGCCTCGCTGCTTTCTTTTCTCCAAGACGGGCTGAGGATTGTACAGCTCTAGGCGGA GTTGGGGCTCTTCGGATCGCTTAGATTCTCCTCTTTGCTGCATTTCCCCCCACGTCCTCGTTCTCCCGCGTCTGCCTGCGGACCCGGAGA AGGGAGAATGGAGAGGGGGCTGCCGCTCCTCTGCGCCGTGCTCGCCCTCGTCCTCGCCCCGGCCGGCGCTTTTCGCAACGATAAATGTGG CGATACTATAAAAATTGAAAGCCCCGGGTACCTTACATCTCCTGGTTATCCTCATTCTTATCACCCAAGTGAAAAATGCGAATGGCTGAT TCAGGCTCCGGACCCATACCAGAGAATTATGATCAACTTCAACCCTCACTTCGATTTGGAGGACAGAGACTGCAAGGTCAGTATAGACCT TCTGATTTGCTGTGCCCTGAGACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAAACTCCAAGTACTGCCGTTTCAAC CAGGACCCAGAAGCAGTGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTT TATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTG CTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGG GAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGACTATCTATGGCTTTTAAAAAATATTTTGTGGCAATGTATCTGTGAG AATCTCATAGTTAATATAAAGATTTTAAAACTGCATTATGACCTAGCCCCCATAATTGGGATTTATCATTTTGGAGGATTCTTTCTAGAG CAAGATACGCTCAAATTCTCCTGTTTGTATTTTGTAAAATGAAGAAGTGAATCTAAGTAACTTAATCACAGTTGTGCATTTTTTTTGGTT CTGTTAGAGAAATTAAAACAGACTGTTTCCTCAGGCCCATTTTAAACTGAACTTATGCTAGGAAACCTTAAGTATGGGGAAGGTAGAAAG TTCATTTCATCACTTAGAAAATATGTCTTCTCAAGAACAAAACTGTGCTGTTACAACTCAGTGTTCAATGTGAAATTGCTGCCAAATGTT >60340_60340_1_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000224652_length(amino acids)=241AA_BP=115 MGLFGSLRFSSLLHFPPRPRSPASACGPGEGRMERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLI QAPDPYQRIMINFNPHFDLEDRDCKVSIDLLICCALRHMFGYPLSNACLHLKTPSTAVSTRTQKQWMRIAVRNLTDCRCFTREPSCLTVF -------------------------------------------------------------- >60340_60340_2_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000369040_length(transcript)=1591nt_BP=795nt GCAGGGTCTCTGGGAAAGACAGACAGACGGACGGGGAGAGCACTCGGAGGGAAAGTTGTTCCTCCCAGTCTCCTGTCAGGCAATTACAGA CACCCGGACCTCCCCTGGGCGCCAGCTCCGCGGCTCCAACGGGTCCAGAAACAAGCCGGATTTTTTTTTTTTCTTCCTGGAAATTGGCTT TGGTGTGTGTTGCCCTACCTCCCTCCTCCCCCTCCCACCCACAGCCCCCCCCCGGCCTTTTTTTTTTTTTTTTTTTTTTTTGAGACATGG CCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAGCCGGAGCTAAATGACAGGATGCAGGCGACTTGAGACAC AAAAAGAGAAGCGTTCCTCTCGGATCCAGGCATTGCCTCGCTGCTTTCTTTTCTCCAAGACGGGCTGAGGATTGTACAGCTCTAGGCGGA GTTGGGGCTCTTCGGATCGCTTAGATTCTCCTCTTTGCTGCATTTCCCCCCACGTCCTCGTTCTCCCGCGTCTGCCTGCGGACCCGGAGA AGGGAGAATGGAGAGGGGGCTGCCGCTCCTCTGCGCCGTGCTCGCCCTCGTCCTCGCCCCGGCCGGCGCTTTTCGCAACGATAAATGTGG CGATACTATAAAAATTGAAAGCCCCGGGTACCTTACATCTCCTGGTTATCCTCATTCTTATCACCCAAGTGAAAAATGCGAATGGCTGAT TCAGGCTCCGGACCCATACCAGAGAATTATGATCAACTTCAACCCTCACTTCGATTTGGAGGACAGAGACTGCAAGGTCAGTATAGACCT TCTGATTTGCTGTGCCCTGAGACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAAACTCCAAGTACTGCCGTTTCAAC CAGGACCCAGAAGCAGTGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTT TATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTG CTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGG GAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGACTATCTATGGCTTTTAAAAAATATTTTGTGGCAATGTATCTGTGAG AATCTCATAGTTAATATAAAGATTTTAAAACTGCATTATGACCTAGCCCCCATAATTGGGATTTATCATTTTGGAGGATTCTTTCTAGAG CAAGATACGCTCAAATTCTCCTGTTTGTATTTTGTAAAATGAAGAAGTGAATCTAAGTAACTTAATCACAGTTGTGCATTTTTTTTGGTT CTGTTAGAGAAATTAAAACAGACTGTTTCCTCAGGCCCATTTTAAACTGAACTTATGCTAGGAAACCTTAAGTATGGGGAAGGTAGAAAG >60340_60340_2_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000369040_length(amino acids)=241AA_BP=115 MGLFGSLRFSSLLHFPPRPRSPASACGPGEGRMERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLI QAPDPYQRIMINFNPHFDLEDRDCKVSIDLLICCALRHMFGYPLSNACLHLKTPSTAVSTRTQKQWMRIAVRNLTDCRCFTREPSCLTVF -------------------------------------------------------------- >60340_60340_3_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000369043_length(transcript)=4351nt_BP=795nt GCAGGGTCTCTGGGAAAGACAGACAGACGGACGGGGAGAGCACTCGGAGGGAAAGTTGTTCCTCCCAGTCTCCTGTCAGGCAATTACAGA CACCCGGACCTCCCCTGGGCGCCAGCTCCGCGGCTCCAACGGGTCCAGAAACAAGCCGGATTTTTTTTTTTTCTTCCTGGAAATTGGCTT TGGTGTGTGTTGCCCTACCTCCCTCCTCCCCCTCCCACCCACAGCCCCCCCCCGGCCTTTTTTTTTTTTTTTTTTTTTTTTGAGACATGG CCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAGCCGGAGCTAAATGACAGGATGCAGGCGACTTGAGACAC AAAAAGAGAAGCGTTCCTCTCGGATCCAGGCATTGCCTCGCTGCTTTCTTTTCTCCAAGACGGGCTGAGGATTGTACAGCTCTAGGCGGA GTTGGGGCTCTTCGGATCGCTTAGATTCTCCTCTTTGCTGCATTTCCCCCCACGTCCTCGTTCTCCCGCGTCTGCCTGCGGACCCGGAGA AGGGAGAATGGAGAGGGGGCTGCCGCTCCTCTGCGCCGTGCTCGCCCTCGTCCTCGCCCCGGCCGGCGCTTTTCGCAACGATAAATGTGG CGATACTATAAAAATTGAAAGCCCCGGGTACCTTACATCTCCTGGTTATCCTCATTCTTATCACCCAAGTGAAAAATGCGAATGGCTGAT TCAGGCTCCGGACCCATACCAGAGAATTATGATCAACTTCAACCCTCACTTCGATTTGGAGGACAGAGACTGCAAGGTCAGTATAGACCT TCTGATTTGCTGTGCCCTGAGACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAAACTCCAAGTACTGCCGTTTCAAC CAGGACCCAGAAGCAGTGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTT TATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTG CTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGG GAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGACTATCTATGGCTTTTAAAAAATATTTTGTGGCAATGTATCTGTGAG AATCTCATAGTTAATATAAAGATTTTAAAACTGCATTATGACCTAGCCCCCATAATTGGGATTTATCATTTTGGAGGATTCTTTCTAGAG CAAGATACGCTCAAATTCTCCTGTTTGTATTTTGTAAAATGAAGAAGTGAATCTAAGTAACTTAATCACAGTTGTGCATTTTTTTTGGTT CTGTTAGAGAAATTAAAACAGACTGTTTCCTCAGGCCCATTTTAAACTGAACTTATGCTAGGAAACCTTAAGTATGGGGAAGGTAGAAAG TTCATTTCATCACTTAGAAAATATGTCTTCTCAAGAACAAAACTGTGCTGTTACAACTCAGTGTTCAATGTGAAATTGCTGCCAAATGTT ATGTAGTTTAATAGAGAACTTGAAAAAATAAAACATTAAAATGGAGCTTGTGTTAGCATCAGGTATCCATTTGTTCAGGACAGTCCTGTT CATGTCTGTTGTCTTGGCATAGTTTTTTCCCCTAGAATATAGTACTCCCTTTTACTCTAAAAAATATCCCAGTTTGGACAATAAAATACA TAATTACTCTAGTTATATTATTTGCTTTACTTCTAAAAATGTAAGAAATTGAATTTTTTTAAAGAAAAATGTTGGTTCCTGCCTTGATCT AAGTCTCATCCAAAGGAAATAAATAGTCACTAGTTTTTTATCTTACAACTCAGGACATTTGTCTTTGGTTATTAATGGAAATTAGTATGT GATTACTTTCATAGTTATGCCACAAATCACATTGAAGAAGGAATCATTCCGACCTCTGTTCCAGGACAAGAGCTAGAACAATCCATTTCT TGTCCTTTGATTTGAGAGTCACAGTCAGGGTGGCTTCTGCCACCCTTAGTAACTCAGAGCAGAGGCCAGCCCCCTCCTTCCCTCACTTTC TTTTGCTGAGTCCTTTGCCCACCTGTCAAGGTGGCAGGCACTGTGCTGGGTACAGGAGGACAGTCAGACATGTCCCTTCTTAGCTATAGT CGAGCTGTCTGGGAAACAGGATGAAAAACAGGAGGGTTATTTTCTTGTGCCCTCTTTGTCAGCTGATCCCCTCTTCTGCTACCAGCTATT TGGCCAGCAAGCCGTTTTTAGTCCCCACTTTGCCCATTTTTCTGTTTTGGTTCATCGTTTCTTAAAAGCCATGTTATAAAACATGGTAGT TTGAATCCTGTTGCTAATTTTAAACTTTCCTCTAAAATGTACTGAATTTTGACAAAAATTTGAAAATATCCTCAGCTAACTAGAATAAAA AGGATCATAAAACAATGATTTTAAAACTGAAATCTCTAGAAACTCAACATCCAAGTCAGCCGCATTTCTTCATTCAGAGTGTGTGTGTCA CACCTGCCAAGGTGCTGCGTACTCTGCTAACCGAGCTAGAGTAGTGAGCAAAGCCATTTTCTCTGATCACAAGATTTTACATTTTTCTGG GATTTTGACCTGCAAAGTAGTCTCGTAAGAGCATTTGAGAGACTTACTTGGAACTGCCTTCAGAATCTATAGAGCCTTTTTTCTCTTTTT CCTCTAAAATGAAAAGAGCTTCATTTTATGATTATAACAAAAGTGACACTGTAAGCAGTTAGAACATTAAGAAGTATAAATAAAAAGTAA AAATCATCTACAACCCTACCATACTCAGAAGGAGAAAAGAACTGTCATGTATGTATACACACATACCTATGTAATTTTAATATAAATAGA ATTATGTTCTACATGCTGTTTTATTTCCTCAACAGTAAATTATGGACATGTCTGAAATGTGAAATAAATTTCAAAATAAGGCTTCAGAAA GTGTAGTAAGTAATCTCTGCATTATTAAAAATAAGCAGGGTAGGGCTGGTACTTGGCTCGCTTAGCATTTGAATGTCCAACTTGGTGTTA TCACTGTATCTTCCCTCCATTTGTCTTTGTGATTAGCATGTAAAATGGTATTCATAAAGATCACAACCCTTGAATATCAGATGAAGAGAA AACTTGACTCCAACATCTTACCACAACTCTGGTTTCTTCCTGCAGAATTCATTTTCAGAGGAAAATGATGAATCATCCCTGTCTGTGAAC CACTGTGCTTTCCTTGAGGGTGGCATTGTAGGTTGACACCAGCAAAGACTCAGAGTGACTTGAGCATTGGAGATCCTTCTACTTGGCTGC TGTATTCATGCATTATGTTGGTTTGAGAATAGCTAGTGTATTGATCCAAGTAGTCAAAGTGTCTTAAAAGGACACCTATTTGTCCTTTTG AGCCCCAGCTGAGTGAATACTGATAGTGGACTAGAAAAGCATAGTCAAGAAAAGTGACCCACCTTGTTACTTGACCAGCAGTCTAGCTGA GAGATCTGATTTTATGTTCGTAACTTTCTGTAAAGAAAGACACAAGGACTTTTCAAAGACAGTTTATATCTTTCCAAGGCAGGAAGCTTT GCATTTGCAATCTTAGTGTTGTGTCCCTTTCTGATTTTCAAATACATCACACCTGCCTTCCTGTTTTGGGAGCAAAGATGTAATTTCAAT TCCCCTTGCTACCGTCCTTATTTAAATTATTTCCATTCTAAGAGATTTTTGTTATTTTTTTAAATGTAATCTGAGCACTTTTTTGTATTC TAAAAGATAGATGATATCAGATAAATATGTTGTACATTTGATTAAAATTATTTAGATAAATATTACTATGTTGACTTTTAAATAGCTTTA TCCTATTTTTCATTCATTTTGCAAATATTTGTTGTGTGTAGTTTCTTAACGTGTCAGAATCTATTATGTAAAAGAACCTTTCCAGATTTC TGAACAGTATATGCTTTGATTTTATAGGCTTTATATTATTTCAGTATGAATAAAGATAAGGAATATGAAACAGTTAACTAAAATGTATCT GTCGTTGCTAACTTGAAAAATGAAGTAGAAACAGTTGGAAAATGTTTGAATTAGAAGTTATTCAAGTGCACACTCTTTTCTAAAAGAAAG CCAATGACTATAAGGCAAAAGAAGTTTGACTGCATGTGGTATTTTTTGCTCTTGTATATGCTTTTTGAACAAGCTATTTGATAAAGCCTG >60340_60340_3_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000369043_length(amino acids)=241AA_BP=115 MGLFGSLRFSSLLHFPPRPRSPASACGPGEGRMERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLI QAPDPYQRIMINFNPHFDLEDRDCKVSIDLLICCALRHMFGYPLSNACLHLKTPSTAVSTRTQKQWMRIAVRNLTDCRCFTREPSCLTVF -------------------------------------------------------------- >60340_60340_4_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000535655_length(transcript)=1834nt_BP=795nt GCAGGGTCTCTGGGAAAGACAGACAGACGGACGGGGAGAGCACTCGGAGGGAAAGTTGTTCCTCCCAGTCTCCTGTCAGGCAATTACAGA CACCCGGACCTCCCCTGGGCGCCAGCTCCGCGGCTCCAACGGGTCCAGAAACAAGCCGGATTTTTTTTTTTTCTTCCTGGAAATTGGCTT TGGTGTGTGTTGCCCTACCTCCCTCCTCCCCCTCCCACCCACAGCCCCCCCCCGGCCTTTTTTTTTTTTTTTTTTTTTTTTGAGACATGG CCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAGCCGGAGCTAAATGACAGGATGCAGGCGACTTGAGACAC AAAAAGAGAAGCGTTCCTCTCGGATCCAGGCATTGCCTCGCTGCTTTCTTTTCTCCAAGACGGGCTGAGGATTGTACAGCTCTAGGCGGA GTTGGGGCTCTTCGGATCGCTTAGATTCTCCTCTTTGCTGCATTTCCCCCCACGTCCTCGTTCTCCCGCGTCTGCCTGCGGACCCGGAGA AGGGAGAATGGAGAGGGGGCTGCCGCTCCTCTGCGCCGTGCTCGCCCTCGTCCTCGCCCCGGCCGGCGCTTTTCGCAACGATAAATGTGG CGATACTATAAAAATTGAAAGCCCCGGGTACCTTACATCTCCTGGTTATCCTCATTCTTATCACCCAAGTGAAAAATGCGAATGGCTGAT TCAGGCTCCGGACCCATACCAGAGAATTATGATCAACTTCAACCCTCACTTCGATTTGGAGGACAGAGACTGCAAGGTCAGTATAGACCT TCTGATTTGCTGTGCCCTGAGACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAAACTCCAAGTACTGCCGTTTCAAC CAGGACCCAGAAGCAGTGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTT TATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTG CTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGG GAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGACTATCTATGGCTTTTAAAAAATATTTTGTGGCAATGTATCTGTGAG AATCTCATAGTTAATATAAAGATTTTAAAACTGCATTATGACCTAGCCCCCATAATTGGGATTTATCATTTTGGAGGATTCTTTCTAGAG CAAGATACGCTCAAATTCTCCTGTTTGTATTTTGTAAAATGAAGAAGTGAATCTAAGTAACTTAATCACAGTTGTGCATTTTTTTTGGTT CTGTTAGAGAAATTAAAACAGACTGTTTCCTCAGGCCCATTTTAAACTGAACTTATGCTAGGAAACCTTAAGTATGGGGAAGGTAGAAAG TTCATTTCATCACTTAGAAAATATGTCTTCTCAAGAACAAAACTGTGCTGTTACAACTCAGTGTTCAATGTGAAATTGCTGCCAAATGTT ATGTAGTTTAATAGAGAACTTGAAAAAATAAAACATTAAAATGGAGCTTGTGTTAGCATCAGGTATCCATTTGTTCAGGACAGTCCTGTT CATGTCTGTTGTCTTGGCATAGTTTTTTCCCCTAGAATATAGTACTCCCTTTTACTCTAAAAAATATCCCAGTTTGGACAATAAAATACA >60340_60340_4_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000535655_length(amino acids)=241AA_BP=115 MGLFGSLRFSSLLHFPPRPRSPASACGPGEGRMERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLI QAPDPYQRIMINFNPHFDLEDRDCKVSIDLLICCALRHMFGYPLSNACLHLKTPSTAVSTRTQKQWMRIAVRNLTDCRCFTREPSCLTVF -------------------------------------------------------------- >60340_60340_5_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000540606_length(transcript)=1473nt_BP=795nt GCAGGGTCTCTGGGAAAGACAGACAGACGGACGGGGAGAGCACTCGGAGGGAAAGTTGTTCCTCCCAGTCTCCTGTCAGGCAATTACAGA CACCCGGACCTCCCCTGGGCGCCAGCTCCGCGGCTCCAACGGGTCCAGAAACAAGCCGGATTTTTTTTTTTTCTTCCTGGAAATTGGCTT TGGTGTGTGTTGCCCTACCTCCCTCCTCCCCCTCCCACCCACAGCCCCCCCCCGGCCTTTTTTTTTTTTTTTTTTTTTTTTGAGACATGG CCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAGCCGGAGCTAAATGACAGGATGCAGGCGACTTGAGACAC AAAAAGAGAAGCGTTCCTCTCGGATCCAGGCATTGCCTCGCTGCTTTCTTTTCTCCAAGACGGGCTGAGGATTGTACAGCTCTAGGCGGA GTTGGGGCTCTTCGGATCGCTTAGATTCTCCTCTTTGCTGCATTTCCCCCCACGTCCTCGTTCTCCCGCGTCTGCCTGCGGACCCGGAGA AGGGAGAATGGAGAGGGGGCTGCCGCTCCTCTGCGCCGTGCTCGCCCTCGTCCTCGCCCCGGCCGGCGCTTTTCGCAACGATAAATGTGG CGATACTATAAAAATTGAAAGCCCCGGGTACCTTACATCTCCTGGTTATCCTCATTCTTATCACCCAAGTGAAAAATGCGAATGGCTGAT TCAGGCTCCGGACCCATACCAGAGAATTATGATCAACTTCAACCCTCACTTCGATTTGGAGGACAGAGACTGCAAGGTCAGTATAGACCT TCTGATTTGCTGTGCCCTGAGACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAAACTCCAAGTACTGCCGTTTCAAC CAGGACCCAGAAGCAGTGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTT TATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTG CTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGG GAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGACTATCTATGGCTTTTAAAAAATATTTTGTGGCAATGTATCTGTGAG AATCTCATAGTTAATATAAAGATTTTAAAACTGCATTATGACCTAGCCCCCATAATTGGGATTTATCATTTTGGAGGATTCTTTCTAGAG CAAGATACGCTCAAATTCTCCTGTTTGTATTTTGTAAAATGAAGAAGTGAATCTAAGTAACTTAATCACAGTTGTGCATTTTTTTTGGTT >60340_60340_5_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000540606_length(amino acids)=241AA_BP=115 MGLFGSLRFSSLLHFPPRPRSPASACGPGEGRMERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLI QAPDPYQRIMINFNPHFDLEDRDCKVSIDLLICCALRHMFGYPLSNACLHLKTPSTAVSTRTQKQWMRIAVRNLTDCRCFTREPSCLTVF -------------------------------------------------------------- >60340_60340_6_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000543447_length(transcript)=1306nt_BP=795nt GCAGGGTCTCTGGGAAAGACAGACAGACGGACGGGGAGAGCACTCGGAGGGAAAGTTGTTCCTCCCAGTCTCCTGTCAGGCAATTACAGA CACCCGGACCTCCCCTGGGCGCCAGCTCCGCGGCTCCAACGGGTCCAGAAACAAGCCGGATTTTTTTTTTTTCTTCCTGGAAATTGGCTT TGGTGTGTGTTGCCCTACCTCCCTCCTCCCCCTCCCACCCACAGCCCCCCCCCGGCCTTTTTTTTTTTTTTTTTTTTTTTTGAGACATGG CCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAGCCGGAGCTAAATGACAGGATGCAGGCGACTTGAGACAC AAAAAGAGAAGCGTTCCTCTCGGATCCAGGCATTGCCTCGCTGCTTTCTTTTCTCCAAGACGGGCTGAGGATTGTACAGCTCTAGGCGGA GTTGGGGCTCTTCGGATCGCTTAGATTCTCCTCTTTGCTGCATTTCCCCCCACGTCCTCGTTCTCCCGCGTCTGCCTGCGGACCCGGAGA AGGGAGAATGGAGAGGGGGCTGCCGCTCCTCTGCGCCGTGCTCGCCCTCGTCCTCGCCCCGGCCGGCGCTTTTCGCAACGATAAATGTGG CGATACTATAAAAATTGAAAGCCCCGGGTACCTTACATCTCCTGGTTATCCTCATTCTTATCACCCAAGTGAAAAATGCGAATGGCTGAT TCAGGCTCCGGACCCATACCAGAGAATTATGATCAACTTCAACCCTCACTTCGATTTGGAGGACAGAGACTGCAAGGTCAGTATAGACCT TCTGATTTGCTGTGCCCTGAGACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAAACTCCAAGTACTGCCGTTTCAAC CAGGACCCAGAAGCAGTGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTT TATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTG CTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGG GAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGACTATCTATGGCTTTTAAAAAATATTTTGTGGCAATGTATCTGTGAG >60340_60340_6_NRP1-ATE1_NRP1_chr10_33619636_ENST00000432372_ATE1_chr10_123549804_ENST00000543447_length(amino acids)=241AA_BP=115 MGLFGSLRFSSLLHFPPRPRSPASACGPGEGRMERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLI QAPDPYQRIMINFNPHFDLEDRDCKVSIDLLICCALRHMFGYPLSNACLHLKTPSTAVSTRTQKQWMRIAVRNLTDCRCFTREPSCLTVF -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for NRP1-ATE1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for NRP1-ATE1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for NRP1-ATE1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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