FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:NTRK2-NTRK2 (FusionGDB2 ID:60701)

Fusion Gene Summary for NTRK2-NTRK2

check button Fusion gene summary
Fusion gene informationFusion gene name: NTRK2-NTRK2
Fusion gene ID: 60701
HgeneTgene
Gene symbol

NTRK2

NTRK2

Gene ID

4915

4915

Gene nameneurotrophic receptor tyrosine kinase 2neurotrophic receptor tyrosine kinase 2
SynonymsEIEE58|GP145-TrkB|OBHD|TRKB|trk-BEIEE58|GP145-TrkB|OBHD|TRKB|trk-B
Cytomap

9q21.33

9q21.33

Type of geneprotein-codingprotein-coding
DescriptionBDNF/NT-3 growth factors receptorBDNF-tropomyosine receptor kinase Bneurotrophic tyrosine kinase receptor type 2tropomyosin-related kinase Btyrosine kinase receptor BBDNF/NT-3 growth factors receptorBDNF-tropomyosine receptor kinase Bneurotrophic tyrosine kinase receptor type 2tropomyosin-related kinase Btyrosine kinase receptor B
Modification date2020031320200313
UniProtAcc.

Q16620

Ensembl transtripts involved in fusion geneENST00000277120, ENST00000304053, 
ENST00000323115, ENST00000359847, 
ENST00000376208, ENST00000376213, 
ENST00000376214, ENST00000395866, 
ENST00000395882, 		ENST00000277120, 
ENST00000304053, ENST00000323115, 
ENST00000359847, ENST00000376208, 
ENST00000376213, ENST00000376214, 
ENST00000395866, ENST00000395882, 
Fusion gene scores* DoF score8 X 8 X 5=32010 X 9 X 7=630
# samples 810
** MAII scorelog2(8/320*10)=-2
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(10/630*10)=-2.65535182861255
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: NTRK2 [Title/Abstract] AND NTRK2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointNTRK2(87342662)-NTRK2(87342767), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across NTRK2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across NTRK2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/AEB388087NTRK2chr9

87342662

-NTRK2chr9

87342767

+


Top

Fusion Gene ORF analysis for NTRK2-NTRK2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000277120ENST00000277120NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000277120ENST00000304053NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000277120ENST00000323115NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000277120ENST00000359847NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000277120ENST00000376208NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000277120ENST00000376213NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000277120ENST00000376214NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000277120ENST00000395866NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000277120ENST00000395882NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000304053ENST00000277120NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000304053ENST00000304053NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000304053ENST00000323115NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000304053ENST00000359847NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000304053ENST00000376208NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000304053ENST00000376213NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000304053ENST00000376214NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000304053ENST00000395866NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000304053ENST00000395882NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000323115ENST00000277120NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000323115ENST00000304053NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000323115ENST00000323115NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000323115ENST00000359847NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000323115ENST00000376208NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000323115ENST00000376213NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000323115ENST00000376214NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000323115ENST00000395866NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000323115ENST00000395882NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000359847ENST00000277120NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000359847ENST00000304053NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000359847ENST00000323115NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000359847ENST00000359847NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000359847ENST00000376208NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000359847ENST00000376213NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000359847ENST00000376214NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000359847ENST00000395866NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000359847ENST00000395882NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376208ENST00000277120NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376208ENST00000304053NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376208ENST00000323115NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376208ENST00000359847NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376208ENST00000376208NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376208ENST00000376213NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376208ENST00000376214NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376208ENST00000395866NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376208ENST00000395882NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376213ENST00000277120NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376213ENST00000304053NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376213ENST00000323115NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376213ENST00000359847NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376213ENST00000376208NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376213ENST00000376213NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376213ENST00000376214NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376213ENST00000395866NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376213ENST00000395882NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376214ENST00000277120NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376214ENST00000304053NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376214ENST00000323115NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376214ENST00000359847NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376214ENST00000376208NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376214ENST00000376213NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376214ENST00000376214NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376214ENST00000395866NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000376214ENST00000395882NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395866ENST00000277120NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395866ENST00000304053NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395866ENST00000323115NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395866ENST00000359847NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395866ENST00000376208NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395866ENST00000376213NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395866ENST00000376214NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395866ENST00000395866NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395866ENST00000395882NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395882ENST00000277120NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395882ENST00000304053NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395882ENST00000323115NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395882ENST00000359847NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395882ENST00000376208NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395882ENST00000376213NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395882ENST00000376214NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395882ENST00000395866NTRK2chr9

87342662

-NTRK2chr9

87342767

+
In-frameENST00000395882ENST00000395882NTRK2chr9

87342662

-NTRK2chr9

87342767

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

Top

Fusion Genomic Features for NTRK2-NTRK2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for NTRK2-NTRK2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr9:87342662/chr9:87342767)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.NTRK2

Q16620

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Receptor tyrosine kinase involved in the development and the maturation of the central and the peripheral nervous systems through regulation of neuron survival, proliferation, migration, differentiation, and synapse formation and plasticity (By similarity). Receptor for BDNF/brain-derived neurotrophic factor and NTF4/neurotrophin-4. Alternatively can also bind NTF3/neurotrophin-3 which is less efficient in activating the receptor but regulates neuron survival through NTRK2 (PubMed:7574684, PubMed:15494731). Upon ligand-binding, undergoes homodimerization, autophosphorylation and activation (PubMed:15494731). Recruits, phosphorylates and/or activates several downstream effectors including SHC1, FRS2, SH2B1, SH2B2 and PLCG1 that regulate distinct overlapping signaling cascades. Through SHC1, FRS2, SH2B1, SH2B2 activates the GRB2-Ras-MAPK cascade that regulates for instance neuronal differentiation including neurite outgrowth. Through the same effectors controls the Ras-PI3 kinase-AKT1 signaling cascade that mainly regulates growth and survival. Through PLCG1 and the downstream protein kinase C-regulated pathways controls synaptic plasticity. Thereby, plays a role in learning and memory by regulating both short term synaptic function and long-term potentiation. PLCG1 also leads to NF-Kappa-B activation and the transcription of genes involved in cell survival. Hence, it is able to suppress anoikis, the apoptosis resulting from loss of cell-matrix interactions. May also play a role in neutrophin-dependent calcium signaling in glial cells and mediate communication between neurons and glia. {ECO:0000250|UniProtKB:P15209, ECO:0000269|PubMed:15494731, ECO:0000269|PubMed:7574684}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneNTRK2chr9:87342662chr9:87342767ENST00000277120019148_1960839.0DomainNote=LRRCT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000277120019197_2820839.0DomainNote=Ig-like C2-type 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000277120019295_3650839.0DomainNote=Ig-like C2-type 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000027712001932_610839.0DomainNote=LRRNT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000277120019538_8070839.0DomainProtein kinase
TgeneNTRK2chr9:87342662chr9:87342767ENST00000304053015148_1960554.0DomainNote=LRRCT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000304053015197_2820554.0DomainNote=Ig-like C2-type 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000304053015295_3650554.0DomainNote=Ig-like C2-type 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000030405301532_610554.0DomainNote=LRRNT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000304053015538_8070554.0DomainProtein kinase
TgeneNTRK2chr9:87342662chr9:87342767ENST00000323115017148_1960823.0DomainNote=LRRCT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000323115017197_2820823.0DomainNote=Ig-like C2-type 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000323115017295_3650823.0DomainNote=Ig-like C2-type 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000032311501732_610823.0DomainNote=LRRNT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000323115017538_8070823.0DomainProtein kinase
TgeneNTRK2chr9:87342662chr9:87342767ENST00000359847012148_1960478.0DomainNote=LRRCT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000359847012197_2820478.0DomainNote=Ig-like C2-type 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000359847012295_3650478.0DomainNote=Ig-like C2-type 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000035984701232_610478.0DomainNote=LRRNT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000359847012538_8070478.0DomainProtein kinase
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376208014148_1960538.0DomainNote=LRRCT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376208014197_2820538.0DomainNote=Ig-like C2-type 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376208014295_3650538.0DomainNote=Ig-like C2-type 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000037620801432_610538.0DomainNote=LRRNT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376208014538_8070538.0DomainProtein kinase
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376213020148_1960823.0DomainNote=LRRCT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376213020197_2820823.0DomainNote=Ig-like C2-type 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376213020295_3650823.0DomainNote=Ig-like C2-type 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000037621302032_610823.0DomainNote=LRRNT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376213020538_8070823.0DomainProtein kinase
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376214021148_1960839.0DomainNote=LRRCT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376214021197_2820839.0DomainNote=Ig-like C2-type 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376214021295_3650839.0DomainNote=Ig-like C2-type 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000037621402132_610839.0DomainNote=LRRNT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376214021538_8070839.0DomainProtein kinase
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395866012148_1960322.0DomainNote=LRRCT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395866012197_2820322.0DomainNote=Ig-like C2-type 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395866012295_3650322.0DomainNote=Ig-like C2-type 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000039586601232_610322.0DomainNote=LRRNT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395866012538_8070322.0DomainProtein kinase
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395882013148_1960478.0DomainNote=LRRCT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395882013197_2820478.0DomainNote=Ig-like C2-type 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395882013295_3650478.0DomainNote=Ig-like C2-type 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000039588201332_610478.0DomainNote=LRRNT
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395882013538_8070478.0DomainProtein kinase
TgeneNTRK2chr9:87342662chr9:87342767ENST00000277120019544_5520839.0Nucleotide bindingATP
TgeneNTRK2chr9:87342662chr9:87342767ENST00000304053015544_5520554.0Nucleotide bindingATP
TgeneNTRK2chr9:87342662chr9:87342767ENST00000323115017544_5520823.0Nucleotide bindingATP
TgeneNTRK2chr9:87342662chr9:87342767ENST00000359847012544_5520478.0Nucleotide bindingATP
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376208014544_5520538.0Nucleotide bindingATP
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376213020544_5520823.0Nucleotide bindingATP
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376214021544_5520839.0Nucleotide bindingATP
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395866012544_5520322.0Nucleotide bindingATP
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395882013544_5520478.0Nucleotide bindingATP
TgeneNTRK2chr9:87342662chr9:87342767ENST00000277120019116_1370839.0RepeatNote=LRR 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000027712001992_1130839.0RepeatNote=LRR 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000304053015116_1370554.0RepeatNote=LRR 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000030405301592_1130554.0RepeatNote=LRR 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000323115017116_1370823.0RepeatNote=LRR 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000032311501792_1130823.0RepeatNote=LRR 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000359847012116_1370478.0RepeatNote=LRR 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000035984701292_1130478.0RepeatNote=LRR 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376208014116_1370538.0RepeatNote=LRR 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000037620801492_1130538.0RepeatNote=LRR 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376213020116_1370823.0RepeatNote=LRR 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000037621302092_1130823.0RepeatNote=LRR 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376214021116_1370839.0RepeatNote=LRR 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000037621402192_1130839.0RepeatNote=LRR 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395866012116_1370322.0RepeatNote=LRR 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000039586601292_1130322.0RepeatNote=LRR 1
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395882013116_1370478.0RepeatNote=LRR 2
TgeneNTRK2chr9:87342662chr9:87342767ENST0000039588201392_1130478.0RepeatNote=LRR 1
TgeneNTRK2chr9:87342662chr9:87342767ENST0000027712001932_4300839.0Topological domainExtracellular
TgeneNTRK2chr9:87342662chr9:87342767ENST00000277120019455_8220839.0Topological domainCytoplasmic
TgeneNTRK2chr9:87342662chr9:87342767ENST0000030405301532_4300554.0Topological domainExtracellular
TgeneNTRK2chr9:87342662chr9:87342767ENST00000304053015455_8220554.0Topological domainCytoplasmic
TgeneNTRK2chr9:87342662chr9:87342767ENST0000032311501732_4300823.0Topological domainExtracellular
TgeneNTRK2chr9:87342662chr9:87342767ENST00000323115017455_8220823.0Topological domainCytoplasmic
TgeneNTRK2chr9:87342662chr9:87342767ENST0000035984701232_4300478.0Topological domainExtracellular
TgeneNTRK2chr9:87342662chr9:87342767ENST00000359847012455_8220478.0Topological domainCytoplasmic
TgeneNTRK2chr9:87342662chr9:87342767ENST0000037620801432_4300538.0Topological domainExtracellular
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376208014455_8220538.0Topological domainCytoplasmic
TgeneNTRK2chr9:87342662chr9:87342767ENST0000037621302032_4300823.0Topological domainExtracellular
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376213020455_8220823.0Topological domainCytoplasmic
TgeneNTRK2chr9:87342662chr9:87342767ENST0000037621402132_4300839.0Topological domainExtracellular
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376214021455_8220839.0Topological domainCytoplasmic
TgeneNTRK2chr9:87342662chr9:87342767ENST0000039586601232_4300322.0Topological domainExtracellular
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395866012455_8220322.0Topological domainCytoplasmic
TgeneNTRK2chr9:87342662chr9:87342767ENST0000039588201332_4300478.0Topological domainExtracellular
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395882013455_8220478.0Topological domainCytoplasmic
TgeneNTRK2chr9:87342662chr9:87342767ENST00000277120019431_4540839.0TransmembraneHelical
TgeneNTRK2chr9:87342662chr9:87342767ENST00000304053015431_4540554.0TransmembraneHelical
TgeneNTRK2chr9:87342662chr9:87342767ENST00000323115017431_4540823.0TransmembraneHelical
TgeneNTRK2chr9:87342662chr9:87342767ENST00000359847012431_4540478.0TransmembraneHelical
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376208014431_4540538.0TransmembraneHelical
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376213020431_4540823.0TransmembraneHelical
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376214021431_4540839.0TransmembraneHelical
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395866012431_4540322.0TransmembraneHelical
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395882013431_4540478.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-119148_1960839.0DomainNote=LRRCT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-119197_2820839.0DomainNote=Ig-like C2-type 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-119295_3650839.0DomainNote=Ig-like C2-type 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-11932_610839.0DomainNote=LRRNT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-119538_8070839.0DomainProtein kinase
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-115148_1960554.0DomainNote=LRRCT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-115197_2820554.0DomainNote=Ig-like C2-type 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-115295_3650554.0DomainNote=Ig-like C2-type 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-11532_610554.0DomainNote=LRRNT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-115538_8070554.0DomainProtein kinase
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-117148_1960823.0DomainNote=LRRCT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-117197_2820823.0DomainNote=Ig-like C2-type 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-117295_3650823.0DomainNote=Ig-like C2-type 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-11732_610823.0DomainNote=LRRNT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-117538_8070823.0DomainProtein kinase
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-112148_1960478.0DomainNote=LRRCT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-112197_2820478.0DomainNote=Ig-like C2-type 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-112295_3650478.0DomainNote=Ig-like C2-type 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-11232_610478.0DomainNote=LRRNT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-112538_8070478.0DomainProtein kinase
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-114148_1960538.0DomainNote=LRRCT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-114197_2820538.0DomainNote=Ig-like C2-type 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-114295_3650538.0DomainNote=Ig-like C2-type 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-11432_610538.0DomainNote=LRRNT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-114538_8070538.0DomainProtein kinase
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-120148_1960823.0DomainNote=LRRCT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-120197_2820823.0DomainNote=Ig-like C2-type 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-120295_3650823.0DomainNote=Ig-like C2-type 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-12032_610823.0DomainNote=LRRNT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-120538_8070823.0DomainProtein kinase
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-121148_1960839.0DomainNote=LRRCT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-121197_2820839.0DomainNote=Ig-like C2-type 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-121295_3650839.0DomainNote=Ig-like C2-type 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-12132_610839.0DomainNote=LRRNT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-121538_8070839.0DomainProtein kinase
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-112148_1960322.0DomainNote=LRRCT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-112197_2820322.0DomainNote=Ig-like C2-type 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-112295_3650322.0DomainNote=Ig-like C2-type 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-11232_610322.0DomainNote=LRRNT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-112538_8070322.0DomainProtein kinase
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-113148_1960478.0DomainNote=LRRCT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-113197_2820478.0DomainNote=Ig-like C2-type 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-113295_3650478.0DomainNote=Ig-like C2-type 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-11332_610478.0DomainNote=LRRNT
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-113538_8070478.0DomainProtein kinase
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-119544_5520839.0Nucleotide bindingATP
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-115544_5520554.0Nucleotide bindingATP
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-117544_5520823.0Nucleotide bindingATP
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-112544_5520478.0Nucleotide bindingATP
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-114544_5520538.0Nucleotide bindingATP
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-120544_5520823.0Nucleotide bindingATP
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-121544_5520839.0Nucleotide bindingATP
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-112544_5520322.0Nucleotide bindingATP
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-113544_5520478.0Nucleotide bindingATP
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-119116_1370839.0RepeatNote=LRR 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-11992_1130839.0RepeatNote=LRR 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-115116_1370554.0RepeatNote=LRR 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-11592_1130554.0RepeatNote=LRR 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-117116_1370823.0RepeatNote=LRR 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-11792_1130823.0RepeatNote=LRR 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-112116_1370478.0RepeatNote=LRR 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-11292_1130478.0RepeatNote=LRR 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-114116_1370538.0RepeatNote=LRR 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-11492_1130538.0RepeatNote=LRR 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-120116_1370823.0RepeatNote=LRR 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-12092_1130823.0RepeatNote=LRR 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-121116_1370839.0RepeatNote=LRR 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-12192_1130839.0RepeatNote=LRR 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-112116_1370322.0RepeatNote=LRR 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-11292_1130322.0RepeatNote=LRR 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-113116_1370478.0RepeatNote=LRR 2
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-11392_1130478.0RepeatNote=LRR 1
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-11932_4300839.0Topological domainExtracellular
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-119455_8220839.0Topological domainCytoplasmic
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-11532_4300554.0Topological domainExtracellular
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-115455_8220554.0Topological domainCytoplasmic
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-11732_4300823.0Topological domainExtracellular
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-117455_8220823.0Topological domainCytoplasmic
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-11232_4300478.0Topological domainExtracellular
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-112455_8220478.0Topological domainCytoplasmic
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-11432_4300538.0Topological domainExtracellular
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-114455_8220538.0Topological domainCytoplasmic
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-12032_4300823.0Topological domainExtracellular
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-120455_8220823.0Topological domainCytoplasmic
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-12132_4300839.0Topological domainExtracellular
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-121455_8220839.0Topological domainCytoplasmic
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-11232_4300322.0Topological domainExtracellular
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-112455_8220322.0Topological domainCytoplasmic
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-11332_4300478.0Topological domainExtracellular
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-113455_8220478.0Topological domainCytoplasmic
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-119431_4540839.0TransmembraneHelical
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-115431_4540554.0TransmembraneHelical
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-117431_4540823.0TransmembraneHelical
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-112431_4540478.0TransmembraneHelical
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-114431_4540538.0TransmembraneHelical
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-120431_4540823.0TransmembraneHelical
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-121431_4540839.0TransmembraneHelical
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-112431_4540322.0TransmembraneHelical
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-113431_4540478.0TransmembraneHelical


Top

Fusion Gene Sequence for NTRK2-NTRK2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

Top

Fusion Gene PPI Analysis for NTRK2-NTRK2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with
TgeneNTRK2chr9:87342662chr9:87342767ENST00000277120019455_4660839.0MAPK8IP3/JIP3
TgeneNTRK2chr9:87342662chr9:87342767ENST00000304053015455_4660554.0MAPK8IP3/JIP3
TgeneNTRK2chr9:87342662chr9:87342767ENST00000323115017455_4660823.0MAPK8IP3/JIP3
TgeneNTRK2chr9:87342662chr9:87342767ENST00000359847012455_4660478.0MAPK8IP3/JIP3
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376208014455_4660538.0MAPK8IP3/JIP3
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376213020455_4660823.0MAPK8IP3/JIP3
TgeneNTRK2chr9:87342662chr9:87342767ENST00000376214021455_4660839.0MAPK8IP3/JIP3
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395866012455_4660322.0MAPK8IP3/JIP3
TgeneNTRK2chr9:87342662chr9:87342767ENST00000395882013455_4660478.0MAPK8IP3/JIP3


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneNTRK2chr9:87342662chr9:87342767ENST00000277120-119455_4660839.0MAPK8IP3/JIP3
HgeneNTRK2chr9:87342662chr9:87342767ENST00000304053-115455_4660554.0MAPK8IP3/JIP3
HgeneNTRK2chr9:87342662chr9:87342767ENST00000323115-117455_4660823.0MAPK8IP3/JIP3
HgeneNTRK2chr9:87342662chr9:87342767ENST00000359847-112455_4660478.0MAPK8IP3/JIP3
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376208-114455_4660538.0MAPK8IP3/JIP3
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376213-120455_4660823.0MAPK8IP3/JIP3
HgeneNTRK2chr9:87342662chr9:87342767ENST00000376214-121455_4660839.0MAPK8IP3/JIP3
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395866-112455_4660322.0MAPK8IP3/JIP3
HgeneNTRK2chr9:87342662chr9:87342767ENST00000395882-113455_4660478.0MAPK8IP3/JIP3


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for NTRK2-NTRK2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for NTRK2-NTRK2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource