|
||||||
|
 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:PCDHGB3-JMJD1C (FusionGDB2 ID:63258) |
Fusion Gene Summary for PCDHGB3-JMJD1C |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PCDHGB3-JMJD1C | Fusion gene ID: 63258 | Hgene | Tgene | Gene symbol | PCDHGB3 | JMJD1C | Gene ID | 56102 | 221037 |
| Gene name | protocadherin gamma subfamily B, 3 | jumonji domain containing 1C | |
| Synonyms | PCDH-GAMMA-B3 | KDM3C|TRIP-8|TRIP8 | |
| Cytomap | 5q31.3 | 10q21.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protocadherin gamma-B3 | probable JmjC domain-containing histone demethylation protein 2CTR-interacting protein 8thyroid hormone receptor interactor 8thyroid receptor-interacting protein 8 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | Q15652 | |
| Ensembl transtripts involved in fusion gene | ENST00000576222, | ENST00000399251, ENST00000489372, ENST00000542921, ENST00000402544, ENST00000399262, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 19 X 16 X 5=1520 |
| # samples | 1 | 17 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(17/1520*10)=-3.16046467219325 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: PCDHGB3 [Title/Abstract] AND JMJD1C [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | PCDHGB3(140752376)-JMJD1C(65024524), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across PCDHGB3 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
 |
| Fusion gene breakpoints across JMJD1C (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
 |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | SKCM | TCGA-EE-A20I-06A | PCDHGB3 | chr5 | 140752376 | + | JMJD1C | chr10 | 65024524 | - |
Top |
Fusion Gene ORF analysis for PCDHGB3-JMJD1C |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000576222 | ENST00000399251 | PCDHGB3 | chr5 | 140752376 | + | JMJD1C | chr10 | 65024524 | - |
| 5CDS-5UTR | ENST00000576222 | ENST00000489372 | PCDHGB3 | chr5 | 140752376 | + | JMJD1C | chr10 | 65024524 | - |
| 5CDS-5UTR | ENST00000576222 | ENST00000542921 | PCDHGB3 | chr5 | 140752376 | + | JMJD1C | chr10 | 65024524 | - |
| 5CDS-intron | ENST00000576222 | ENST00000402544 | PCDHGB3 | chr5 | 140752376 | + | JMJD1C | chr10 | 65024524 | - |
| In-frame | ENST00000576222 | ENST00000399262 | PCDHGB3 | chr5 | 140752376 | + | JMJD1C | chr10 | 65024524 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000576222 | PCDHGB3 | chr5 | 140752376 | + | ENST00000399262 | JMJD1C | chr10 | 65024524 | - | 10660 | 2546 | 131 | 9835 | 3234 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000576222 | ENST00000399262 | PCDHGB3 | chr5 | 140752376 | + | JMJD1C | chr10 | 65024524 | - | 0.000328671 | 0.99967134 |
Top |
Fusion Genomic Features for PCDHGB3-JMJD1C |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for PCDHGB3-JMJD1C |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr5:140752376/chr10:65024524) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | JMJD1C |
| FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Probable histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Demethylation of Lys residue generates formaldehyde and succinate. May be involved in hormone-dependent transcriptional activation, by participating in recruitment to androgen-receptor target genes (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | PCDHGB3 | chr5:140752376 | chr10:65024524 | ENST00000576222 | + | 1 | 4 | 134_242 | 805 | 930.0 | Domain | Cadherin 2 |
| Hgene | PCDHGB3 | chr5:140752376 | chr10:65024524 | ENST00000576222 | + | 1 | 4 | 243_347 | 805 | 930.0 | Domain | Cadherin 3 |
| Hgene | PCDHGB3 | chr5:140752376 | chr10:65024524 | ENST00000576222 | + | 1 | 4 | 31_133 | 805 | 930.0 | Domain | Cadherin 1 |
| Hgene | PCDHGB3 | chr5:140752376 | chr10:65024524 | ENST00000576222 | + | 1 | 4 | 348_452 | 805 | 930.0 | Domain | Cadherin 4 |
| Hgene | PCDHGB3 | chr5:140752376 | chr10:65024524 | ENST00000576222 | + | 1 | 4 | 453_562 | 805 | 930.0 | Domain | Cadherin 5 |
| Hgene | PCDHGB3 | chr5:140752376 | chr10:65024524 | ENST00000576222 | + | 1 | 4 | 570_675 | 805 | 930.0 | Domain | Cadherin 6 |
| Hgene | PCDHGB3 | chr5:140752376 | chr10:65024524 | ENST00000576222 | + | 1 | 4 | 31_691 | 805 | 930.0 | Topological domain | Extracellular |
| Hgene | PCDHGB3 | chr5:140752376 | chr10:65024524 | ENST00000576222 | + | 1 | 4 | 692_712 | 805 | 930.0 | Transmembrane | Helical |
| Tgene | JMJD1C | chr5:140752376 | chr10:65024524 | ENST00000399251 | 1 | 25 | 2274_2498 | 0 | 477.0 | Domain | JmjC | |
| Tgene | JMJD1C | chr5:140752376 | chr10:65024524 | ENST00000399262 | 1 | 26 | 2274_2498 | 111 | 2541.0 | Domain | JmjC | |
| Tgene | JMJD1C | chr5:140752376 | chr10:65024524 | ENST00000542921 | 0 | 25 | 2274_2498 | 0 | 2359.0 | Domain | JmjC | |
| Tgene | JMJD1C | chr5:140752376 | chr10:65024524 | ENST00000399251 | 1 | 25 | 2066_2070 | 0 | 477.0 | Motif | Note=LXXLL motif | |
| Tgene | JMJD1C | chr5:140752376 | chr10:65024524 | ENST00000399262 | 1 | 26 | 2066_2070 | 111 | 2541.0 | Motif | Note=LXXLL motif | |
| Tgene | JMJD1C | chr5:140752376 | chr10:65024524 | ENST00000542921 | 0 | 25 | 2066_2070 | 0 | 2359.0 | Motif | Note=LXXLL motif | |
| Tgene | JMJD1C | chr5:140752376 | chr10:65024524 | ENST00000399251 | 1 | 25 | 1846_1871 | 0 | 477.0 | Zinc finger | C6-type | |
| Tgene | JMJD1C | chr5:140752376 | chr10:65024524 | ENST00000399262 | 1 | 26 | 1846_1871 | 111 | 2541.0 | Zinc finger | C6-type | |
| Tgene | JMJD1C | chr5:140752376 | chr10:65024524 | ENST00000542921 | 0 | 25 | 1846_1871 | 0 | 2359.0 | Zinc finger | C6-type |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | PCDHGB3 | chr5:140752376 | chr10:65024524 | ENST00000576222 | + | 1 | 4 | 713_929 | 805 | 930.0 | Topological domain | Cytoplasmic |
Top |
Fusion Gene Sequence for PCDHGB3-JMJD1C |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >63258_63258_1_PCDHGB3-JMJD1C_PCDHGB3_chr5_140752376_ENST00000576222_JMJD1C_chr10_65024524_ENST00000399262_length(transcript)=10660nt_BP=2546nt CAGCGGAGACACCCATTAGAGAACCCAAGCACAAAGACAAAGCAAATAGTTGGTCCTGCTCGGAGAACTCTTGGGATTATTTAAAGATCT CCTCTCCTCGGATTTAGAAAGGCAAAGGCGCAGAGAGCGGGATGGGAAATAGCTCCGGATGGAGGGGCCCAGCAGGGCAGAGGCGAATGC TATTTCTCTTCCTGCTCTCTTTGTTAGACCAGGTTCTCTCCGAACCGATCCGCTACGCTATTCCCGAGGAGCTGGACAGGGGCTCGCTGG TAGGGAACCTCGCCAAGGACCTGGGGTTTGGCGTGGGGGATTTACCTACTAGGAACCTGCGGGTTATTGCAGAGAAGAAATTCTTTACCG TGAGCCCCGAAAATGGGAACTTACTTGTGAGCGACCGTATAGACCGAGAGGAGATTTGTGGCAAGAAGTCGACGTGTGTTCTGGAATTTG AAATGGTTGCTGAAAAGCCTTTAAACTTTTTTCATGTAACTGTGCTGATCCAGGATATTAACGACAACCCACCGACCTTTAGCCAAAATA TCACTGAGCTGGAAATCAGCGAACTGGCTCTCACTGGAGCCACATTTGCCCTGGAATCTGCGCAAGATCCTGATGTAGGTGTCAATTCGC TGCAGCAGTACTACCTCAGCCCTGATCCGCACTTCTCTTTGATTCAGAAGGAGAACCTGGATGGCAGTAGGTACCCAGAGCTAGTACTGA AAGCACCCCTGGACAGGGAAGAGCAGCCACATCACCACCTGGTCCTCACAGCTGTGGATGGGGGCGAGCCCTCCAGAAGCTGTACCACCC AGATCAGGGTAATTGTCGCAGATGCAAATGATAACCCCCCAGTATTTACTCAGGACATGTACAGGGTCAATGTTGCAGAGAACCTGCCCG CTGGCTCCTCCGTATTAAAAGTGATGGCCATTGACATGGATGAGGGCATCAATGCCGAAATCATCTATGCCTTCATCAATATTGGCAAGG AAGTGAGACAACTGTTCAAGCTGGACAGTAAAACGGGGGAACTCACCACTATTGGAGAACTGGACTTTGAAGAGAGAGATAGCTACACAA TTGGGGTGGAAGCAAAGGATGGTGGACATCACACTGCATATTGTAAAGTACAGATAGATATTTCAGATGAAAATGACAATGCCCCGGAGA TAACCCTGGCTTCTGAATCCCAACATATACAAGAAGATGCTGAGCTGGGGACTGCCGTTGCCCTGATCAAAACACATGATCTAGATTCTG GATTTAATGGAGAAATCCTATGCCAACTAAAAGGAAACTTCCCCTTTAAAATCGTTCAAGATACCAAAAACACATACAGGTTGGTGACAG ATGGAGCCCTGGACCGGGAGCAGATCCCAGAATACAATGTGACGATCACAGCTACCGACAAAGGCAATCCACCGCTCTCCTCCAGCAAGA CCATCACTCTGCACATCCTTGATGTCAACGACAACGTTCCCGTTTTCCACCAGGCCTCCTACACCGTGCATGTAGCTGAGAACAATCCGC CTGGAGCCTCCATTGCGCATGTCAGAGCCTCGGATCCCGACTTGGGACCTAATGGCCTTGTCTCCTACTACATCGTGGCCAGTGACCTGG AGCCGCGGGAGCTGTCGTCCTACGTGTCCGTGAGCGCGCGGAGCGGGGTGGTGTTCGCGCAGCGAGCCTTCGACCACGAGCAGCTGCGTG CCTTCGAGCTCACTCTGCAGGCCCGCGACCAGGGCTCGCCTACGCTCAGCGCCAACGTGAGCCTGCGCGTGTTGGTGGACGACCGCAACG ACAATGCACCGCTGGTGCTGTACCCAGCTCTGGGGCCCGAAGGCTCTGCGCTCTTCGATATGGTGCCGCGCTCTGCAGAGCCTGGCTACC TGGTGACCAAGGTGGTGGCGGTGGACGCAGACTCGGGATACAACGCCTGGCTGTCCTACCACATTGTGCAGGCCAGCGAGCCCGGGCTGT TCAGCCTGGGCCTGCGCACGGGTGAGGTGCGCACGGCGCGTACCTTGGGCGACAGGGAGGCCGCCCGCCAGCGCCTGCTGGTCACTGTGC GTGATGGAGGACAGCAGCCTCTTTCAGCCACCGTCATGCTGCACCTAATCTTCGCAGATAGCTTGCAAGAGATACAACCTGACCTTAGCG ACCGCCCCACTCCCTCTGACCCTCAGGCGGAGCTACAGTTTCACCTAGTAGTGGCGTTGGCCTTGATCTCAGTGCTCTTCCTCCTCGCGG TGATTCTGGCAATCTCCCTGCGCCTGCGATGCTCCTCCAGACCCGCCACTGAGGGCTACTTTCAGCCTGGTGTCTGCTTCAAGACTGTAC CTGGAGTTCTCCCCACCTACAGCGAAAGGACTTTGCCTTATTCCTACAATCCGTGTGCTGCCTCACATTCCTCAAACACCGAGTTTAAAT TTCTCAATATAAAGGCTGAAAATGCTGCACCACAAGATCTTCTATGTGATGAAGCCTCTTGGTTTGAAAGTAATGACAATCCAGAAATGC CTTCTAATTCAGGCAATTTGCAAAAGACTTTCAAACCTCTGGTTGAAAGAAATATACCCAGTTCAGTCACTGCAGTAGAATTCCTTGTAG ATAAGCAACTGGATTTTTTAACTGAAGATAGTGCCTTTCAGCCCTACCAGGACGACATAGACAGCCTAAACCCAGTTCTCAGGGACAACC CGCAGCTTCATGAGGAAGTGAAAGTCTGGGTAAAGGAACAAAAGGTTCAGGAGATTTTTATGCAAGGTCCTTATTCCTTAAATGGATACA GAGTGAGAGTATATAGACAAGACTCTGCCACCCAGTGGTTTACTGGCATAATTACTCATCATGATCTCTTCACCCGCACCATGATCGTTA TGAATGATCAGGTACTAGAACCACAGAATGTCGATCCTTCTATGGTTCAAATGACCTTTCTAGATGATGTTGTTCACTCTTTGTTAAAAG GTGAAAATATTGGCATTACATCACGACGCAGGTCTCGTGCCAATCAAAACGTCAACGCTGTTCACAGCCATTATACACGTGCCCAAGCAA ATAGTCCCAGACCAGCAATGAACTCCCAAGCTGCTGTACCAAAACAGAATACACACCAGCAACAGCAACAAAGAAGTATCCGTCCAAATA AGAGGAAGGGCTCAGATAGCAGTATACCAGATGAAGAGAAGATGAAGGAGGAAAAATATGATTATATATCACGAGGAGAAAATCCTAAAG GTAAAAACAAACACTTGATGAATAAAAGAAGGAAACCTGAGGAGGATGAAAAGAAACTAAATATGAAAAGACTTCGAACTGACAATGTTT CAGACTTTTCTGAGAGCAGTGACTCAGAAAATTCAAATAAGAGAATAATAGATAATTCCTCAGAACAGAAGCCAGAGAATGAATTGAAAA ATAAAAATACTTCAAAAATAAATGGAGAAGAAGGAAAACCCCATAATAATGAGAAGGCAGGAGAAGAGACCCTAAAAAATAGCCAGCCTC CCTGGGATCAAATACAGGAAGATAAAAAACATGAAGAAGCAGAGAAGCGGAAGTCTGTTGACACTCAGCTTCAAGAAGATATGATTATTC ATTCGTCAGAACAGTCCACAGTTTCTGATCATAATTCTAATGATTTACTTCCTCAGGAATGCAATATGGATAAAACACATACCATGGAAT TGCTACCAAAGGAGAAGTTTGTATCCAGACCACCCACACCAAAATGTGTTATTGATATTACAAATGACACTAATTTAGAAAAGGTGGCTC AGGAAAACTCAAGTACCTTTGGCCTTCAGACACTTCAGAAAATGGATCCTAATGTTAGTGATTCAAAACACTCTATTGCAAATGCAAAAT TCTTGGAAACAGCAAAAAAAGATTCTGACCAGAGCTGGGTCAGTGATGTAGTTAAAGTGGATCTAACCCAATCAAGTGTTACAAATGCTT CTTCAGGAAATGATCACTTGAACATGGAAAAAGAGAAGTATGTCTCTTACATTTCTCCTTTAAGTGCAGTTTCTGTCATGGAAGATAAGC TGCATAAGCGAAGTCCACCTCCAGAGACTATAAAATCTAAACTTAATACTTCAGTAGATACTCACAAGATAAAATCCAGCCCATCACCTG AAGTTGTTAAACCCAAAATAACTCATTCTCCTGATTCTGTAAAGTCTAAGGCCACTTATGTGAACAGCCAAGCTACTGGTGAAAGAAGAT TGGCAAATAAGATAGAACATGAGCTATCAAGATGCAGTTTTCATCCAATTCCTACTCGAAGCAGTACATTAGAAACTACAAAGAGTCCTC TTATCATTGATAAAAATGAGCATTTTACAGTTTACAGAGATCCTGCACTTATTGGGTCAGAAACAGGAGCTAATCATATTTCACCTTTCC TAAGCCAGCATCCTTTTCCTCTTCACTCCTCATCTCATAGAACCTGTTTAAATCCAGGTACCCATCATCCTGCCTTAACTCCTGCACCCC ATTTACTAGCCGGATCATCTAGTCAAACTCCATTACCTACCATTAACACTCATCCTCTGACTAGTGGTCCACACCATGCTGTTCATCACC CTCATTTACTTCCCACTGTGTTACCTGGAGTGCCTACTGCCTCCTTACTTGGTGGCCACCCACGACTAGAGAGTGCTCATGCCAGCAGCT TGAGCCACTTAGCGCTAGCACACCAGCAACAACAACAGTTGTTACAGCACCAGTCACCTCATCTTCTTGGACAAGCCCATCCTTCTGCTT CATATAATCAGCTTGGACTTTATCCAATTATTTGGCAGTATCCAAATGGAACACATGCATACTCAGGACTTGGTTTGCCTTCTTCTAAGT GGGTTCACCCAGAAAATGCAGTTAATGCTGAAGCTTCATTAAGGAGGAATTCTCCCAGTCCTTGGCTACATCAGCCCACCCCTGTGACCT CAGCAGATGGTATTGGATTACTTAGTCACATTCCTGTCAGACCTTCCAGTGCAGAGCCTCATCGGCCTCTTAAAATTACAGCCCATTCCA GTCCACCATTGACAAAAACTTTAGTAGATCATCATAAGGAAGAATTAGAAAGAAAAGCTTTTATGGAACCATTACGGTCTGTTGCATCCA CATCAGCCAAAAATGACCTGGATCTAAATAGGTCACAGACTGGAAAAGATTGTCACTTACATAGGCATTTTGTGGATCCAGTATTAAATC AGTTACAGAGGCCACCCCAGGAGACTGGAGAGAGGTTAAACAAATACAAAGAGGAACACCGTCGAATTCTTCAAGAAAGTATTGATGTTG CTCCCTTTACAACTAAAATCAAGGGACTTGAGGGTGAGAGAGAGAATTATTCCAGAGTGGCATCATCATCTTCCAGTCCTAAAAGCCATA TCATCAAACAAGATATGGATGTAGAACGCTCAGTATCAGATCTTTATAAAATGAAGCACTCAGTGCCTCAGAGTTTACCCCAAAGTAACT ATTTCACTACATTGTCTAATAGTGTGGTCAATGAACCACCAAGATCATACCCATCCAAAGAAGTTTCAAATATTTACGGTGATAAACAGA GTAATGCCCTTGCAGCGGCAGCAGCTAATCCTCAAACTCTGACTTCATTTATAACATCTCTTTCAAAGCCTCCACCTTTGATTAAACACC AACCAGAAAGTGAAGGTTTAGTAGGCAAGATACCAGAACATCTTCCACATCAGATTGCATCTCACTCAGTAACAACCTTCAGAAATGATT GTAGGAGTCCTACCCATTTGACAGTTTCTTCTACAAATACACTCCGCAGTATGCCTGCATTACATAGAGCACCAGTATTTCACCCACCAA TCCATCACAGCCTGGAAAGAAAGGAAGGCAGCTATAGTAGTCTTTCCCCTCCAACTTTAACTCCGGTGATGCCAGTAAATGCTGGTGGTA AAGTTCAAGAATCACAGAAGCCTCCAACTCTAATACCCGAACCAAAAGACTCCCAGGCAAATTTTAAGAGTTCTTCAGAACAGAGTTTGA CGGAGATGTGGAGACCTAATAATAACCTCAGCAAAGAGAAAACTGAATGGCATGTGGAGAAAAGCAGCGGAAAGTTACAGGCTGCTATGG CATCTGTCATTGTGCGTCCATCTTCTAGTACAAAAACTGATAGTATGCCAGCAATGCAGTTAGCTTCTAAAGATCGTGTTAGTGAAAGAT CTTCAGCTGGGGCACATAAAACAGATTGCCTCAAACTAGCAGAAGCCGGAGAAACTGGAAGAATCATTTTGCCAAATGTGAATTCAGACA GTGTTCACACAAAATCTGAAAAAAACTTTCAGGCTGTCTCACAGGGCAGTGTTCCCAGTTCAGTCATGTCTGCTGTAAATACGATGTGTA ATACCAAAACGGATGTAATCACATCTGCTGCCGATACTACCAGTGTTTCCAGCTGGGGTGGTTCAGAAGTAATTTCCTCTTTATCAAATA CCATTTTGGCCTCTACATCATCAGAATGTGTATCTTCAAAAAGTGTCAGTCAGCCAGTGGCTCAAAAACAAGAATGCAAGGTCAGCACCA CAGCACCAGTTACATTAGCCAGTAGTAAGACAGGAAGTGTTGTTCAACCCAGTTCTGGGTTCTCAGGCACAACTGATTTTATCCATTTAA AAAAGCACAAGGCAGCATTGGCTGCAGCTCAGTATAAAAGTAGTAATGCCAGTGAGACTGAACCTAATGCTATAAAAAATCAGACACTTT CAGCCTCCCTTCCTCTGGATAGCACTGTAATCTGTAGTACAATTAACAAAGCAAACTCTGTAGGAAATGGGCAAGCTTCCCAGACAAGTC AACCAAACTACCATACTAAACTGAAAAAGGCCTGGCTCACCAGACACTCAGAAGAAGATAAAAATACTAATAAAATGGAAAATTCAGGGA ATTCTGTATCAGAAATTATTAAGCCATGTTCTGTCAACTTAATAGCCTCTACATCTAGTGATATACAAAATAGTGTAGATAGTAAGATCA TAGTTGATAAATATGTAAAAGATGATAAAGTCAACAGGAGAAAAGCCAAAAGAACTTATGAATCTGGCTCTGAAAGTGGAGACTCAGATG AAAGTGAAAGCAAGTCAGAGCAAAGGACTAAAAGACAACCTAAGCCAACTTACAAAAAGAAGCAAAATGATTTGCAAAAGAGAAAAGGTG AAATAGAAGAAGATTTGAAACCCAATGGAGTTCTCAGCAGGAGTGCCAAAGAAAGAAGTAAACTGAAGTTGCAAAGCAACAGTAATACTG GCATTCCTCGTTCAGTATTGAAAGATTGGCGTAAAGTCAAGAAGCTGAAGCAAACTGGGGAATCCTTTTTACAGGATGACTCCTGCTGTG AGATAGGGCCTAATTTACAAAAGTGTCGAGAATGTAGACTTATTCGCAGTAAAAAAGGAGAAGAACCAGCTCACTCACCAGTATTTTGTA GATTTTACTACTTTAGACGGTTGTCATTTAGTAAAAACGGAGTAGTTAGAATAGATGGTTTCTCTTCTCCTGACCAATATGATGATGAAG CTATGAGTTTGTGGACACATGAAAATTTTGAAGATGATGAACTAGATATAGAGACTTCTAAATATATCTTGGATATAATAGGTGATAAGT TCTGTCAATTAGTAACATCTGAAAAAACAGCTTTGTCCTGGGTGAAAAAGGATGCCAAAATTGCCTGGAAAAGAGCAGTGAGAGGAGTCC GGGAGATGTGTGATGCATGTGAAGCAACATTGTTTAACATTCACTGGGTCTGCCAAAAATGTGGATTTGTGGTCTGCTTAGATTGTTACA AGGCAAAGGAAAGGAAGAGTTCTAGAGATAAAGAACTATATGCTTGGATGAAGTGTGTGAAGGGACAGCCTCATGATCACAAACATTTAA TGCCAACCCAAATTATACCTGGTTCTGTTTTGACAGATCTTCTAGATGCCATGCACACTCTTAGGGAAAAATATGGTATTAAATCCCATT GTCATTGTACTAACAAACAGAATTTACAAGTTGGAAATTTTCCTACAATGAATGGTGTATCTCAAGTTTTACAGAATGTTCTTAATCACA GTAATAAAATTTCTCTGTGCATGCCTGAGTCTCAGCAGCAAAATACTCCTCCGAAGTCTGAGAAAAATGGTGGCAGCAGCCCAGAGAGTG ATGTAGGCACAGATAACAAGTTAACTCCTCCAGAATCCCAGTCACCACTGCACTGGTTAGCAGATCTTGCAGAGCAAAAAGCCAGAGAGG AAAAAAAAGAAAACAAAGAACTTACCCTTGAAAACCAAATTAAAGAAGAAAGAGAACAAGACAACTCTGAATCTCCAAATGGCAGAACAT CACCTCTTGTGTCCCAGAATAATGAACAAGGCTCAACCTTACGGGATTTGCTGACTACAACAGCTGGAAAGCTACGTGTGGGGTCTACAG ATGCTGGCATTGCCTTTGCCCCAGTATATTCAATGGGAGCCCCAAGTAGCAAAAGTGGACGGACTATGCCTAACATTCTTGATGACATAA TTGCTTCAGTTGTTGAAAACAAAATTCCACCAAGTAAAACCTCCAAGATAAATGTAAAACCAGAGCTTAAAGAAGAGCCTGAAGAAAGCA TAATATCTGCAGTGGATGAAAATAATAAATTATACAGTGATATACCACATTCTTGGATCTGTGAGAAGCATATTTTATGGCTTAAGGATT ATAAGAATAGCAGTAATTGGAAGCTTTTCAAAGAATGTTGGAAACAAGGACAGCCTGCAGTGGTTTCTGGTGTGCATAAGAAAATGAACA TTAGCCTATGGAAGGCGGAATCAATTAGTCTTGATTTTGGAGACCACCAAGCTGATCTCCTGAACTGCAAAGATAGCATCATTTCAAATG CCAATGTTAAGGAATTCTGGGATGGTTTTGAAGAAGTTTCAAAACGGCAGAAAAACAAGAGTGGAGAAACAGTTGTTTTAAAATTGAAAG ACTGGCCTTCAGGAGAAGACTTCAAGACTATGATGCCAGCAAGATACGAAGATCTTTTAAAAAGTCTGCCATTGCCAGAATATTGTAATC CAGAAGGAAAATTCAATTTGGCCTCTCATTTGCCAGGATTTTTTGTACGTCCTGATCTAGGACCCAGGTTGTGCAGTGCCTATGGTGTAG TTGCTGCTAAAGATCATGATATAGGAACAACAAATCTCCATATTGAAGTTTCTGATGTTGTAAATATACTAGTTTATGTTGGCATAGCAA AAGGAAATGGCATTCTCTCAAAAGCAGGAATTCTCAAGAAATTTGAGGAAGAAGATTTGGATGACATTTTAAGGAAAAGATTGAAGGACT CAAGTGAAATACCTGGTGCTCTGTGGCATATTTATGCTGGGAAAGATGTTGACAAGATAAGGGAATTTCTTCAAAAGATTTCAAAAGAAC AAGGCCTTGAAGTTCTACCAGAACATGATCCAATACGTGACCAAAGTTGGTATGTGAACAAAAAGCTCCGTCAAAGGCTGCTTGAAGAAT ATGGAGTCAGAACCTGTACTCTTATTCAGTTCCTTGGTGATGCTATTGTTTTGCCAGCGGGAGCACTTCATCAGGTTCAGAATTTTCACA GCTGTATTCAGGTAACTGAAGATTTTGTGTCTCCAGAACATCTTGTAGAGTCATTTCATTTAACACAGGAACTGAGACTTTTGAAGGAAG AAATCAATTATGATGATAAACTACAGGTTAAAAATATTTTGTATCATGCAGTCAAAGAAATGGTGAGAGCCTTGAAGATACACGAGGATG AAGTAGAGGATATGGAAGAAAATTAAGTGTGATCCAGTTTGATATTTTTAGGTTGTTGAACTGGGATTACTTAACCTTGAATGATGATAT GTATGCACACTGACTTTAAGCTTCATAAAACCATCAGTGCCAAGAAATTCTCTTTGTAGTAATTACTTGTTACTGACACCACAGCAGTAT AGCATATGTCACAGCTCCTGTGATTCAATGTTATAAAACAAGCAGAATTTTAAAAGCAGCACTATATAGCTGTTTTGTATTATAGTGTAT ATGATGTTTGTGAAAATGCCAGATTTAAAATGATGTATTTATTTTTGGTAAAAAATAAAAAATTCTATGCTATATTGTTGATCAAGTGTA AATGTGACCTTGTACAGTTTACTAAAATTACTGATATTTTTCACTACATTGAGACAGTTACTGTGAGAATAGGACACAAACACCAGCTAT TGCCTGCATCTGGGAAATTGCTGAATCGCACAGCAGTCATGTCATAATCAGAAAATTACTGCCAAATAATTGTAAAATTTGTAAAGTATA AAGTATATAAAGTAGATACTAAATACAGACACTTCAATATTTTGTTGAAGCTATTGACTGTACAATTAAACATTTTCAAAAGGTGTAATT TATTTAAAATTGTCTCATTTTGGTAAAATTTATGTGAACTTTTAAAGCTAAATATTAAACTTAATATGCTATGTAAATATATACATATAT ACATTTAATGATGTATTTTTTTAAAACATTGGCTTGCTTTTGTTAAAGTGCAAGTGTTACATATGGCTTTGTACATTAAAGTTGAAAGGG >63258_63258_1_PCDHGB3-JMJD1C_PCDHGB3_chr5_140752376_ENST00000576222_JMJD1C_chr10_65024524_ENST00000399262_length(amino acids)=3234AA_BP=805 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKKFFTVSPENGNLLVSDRI DREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAENLPAGSSVLKVMAIDMD EGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSSSKTITLHILDVNDNVP VFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEPGLFSLGLRTGEVRTAR TLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEASWFESNDNPEMPSNSGNLQKTFKPL VERNIPSSVTAVEFLVDKQLDFLTEDSAFQPYQDDIDSLNPVLRDNPQLHEEVKVWVKEQKVQEIFMQGPYSLNGYRVRVYRQDSATQWF TGIITHHDLFTRTMIVMNDQVLEPQNVDPSMVQMTFLDDVVHSLLKGENIGITSRRRSRANQNVNAVHSHYTRAQANSPRPAMNSQAAVP KQNTHQQQQQRSIRPNKRKGSDSSIPDEEKMKEEKYDYISRGENPKGKNKHLMNKRRKPEEDEKKLNMKRLRTDNVSDFSESSDSENSNK RIIDNSSEQKPENELKNKNTSKINGEEGKPHNNEKAGEETLKNSQPPWDQIQEDKKHEEAEKRKSVDTQLQEDMIIHSSEQSTVSDHNSN DLLPQECNMDKTHTMELLPKEKFVSRPPTPKCVIDITNDTNLEKVAQENSSTFGLQTLQKMDPNVSDSKHSIANAKFLETAKKDSDQSWV SDVVKVDLTQSSVTNASSGNDHLNMEKEKYVSYISPLSAVSVMEDKLHKRSPPPETIKSKLNTSVDTHKIKSSPSPEVVKPKITHSPDSV KSKATYVNSQATGERRLANKIEHELSRCSFHPIPTRSSTLETTKSPLIIDKNEHFTVYRDPALIGSETGANHISPFLSQHPFPLHSSSHR TCLNPGTHHPALTPAPHLLAGSSSQTPLPTINTHPLTSGPHHAVHHPHLLPTVLPGVPTASLLGGHPRLESAHASSLSHLALAHQQQQQL LQHQSPHLLGQAHPSASYNQLGLYPIIWQYPNGTHAYSGLGLPSSKWVHPENAVNAEASLRRNSPSPWLHQPTPVTSADGIGLLSHIPVR PSSAEPHRPLKITAHSSPPLTKTLVDHHKEELERKAFMEPLRSVASTSAKNDLDLNRSQTGKDCHLHRHFVDPVLNQLQRPPQETGERLN KYKEEHRRILQESIDVAPFTTKIKGLEGERENYSRVASSSSSPKSHIIKQDMDVERSVSDLYKMKHSVPQSLPQSNYFTTLSNSVVNEPP RSYPSKEVSNIYGDKQSNALAAAAANPQTLTSFITSLSKPPPLIKHQPESEGLVGKIPEHLPHQIASHSVTTFRNDCRSPTHLTVSSTNT LRSMPALHRAPVFHPPIHHSLERKEGSYSSLSPPTLTPVMPVNAGGKVQESQKPPTLIPEPKDSQANFKSSSEQSLTEMWRPNNNLSKEK TEWHVEKSSGKLQAAMASVIVRPSSSTKTDSMPAMQLASKDRVSERSSAGAHKTDCLKLAEAGETGRIILPNVNSDSVHTKSEKNFQAVS QGSVPSSVMSAVNTMCNTKTDVITSAADTTSVSSWGGSEVISSLSNTILASTSSECVSSKSVSQPVAQKQECKVSTTAPVTLASSKTGSV VQPSSGFSGTTDFIHLKKHKAALAAAQYKSSNASETEPNAIKNQTLSASLPLDSTVICSTINKANSVGNGQASQTSQPNYHTKLKKAWLT RHSEEDKNTNKMENSGNSVSEIIKPCSVNLIASTSSDIQNSVDSKIIVDKYVKDDKVNRRKAKRTYESGSESGDSDESESKSEQRTKRQP KPTYKKKQNDLQKRKGEIEEDLKPNGVLSRSAKERSKLKLQSNSNTGIPRSVLKDWRKVKKLKQTGESFLQDDSCCEIGPNLQKCRECRL IRSKKGEEPAHSPVFCRFYYFRRLSFSKNGVVRIDGFSSPDQYDDEAMSLWTHENFEDDELDIETSKYILDIIGDKFCQLVTSEKTALSW VKKDAKIAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKAKERKSSRDKELYAWMKCVKGQPHDHKHLMPTQIIPGSVLTDL LDAMHTLREKYGIKSHCHCTNKQNLQVGNFPTMNGVSQVLQNVLNHSNKISLCMPESQQQNTPPKSEKNGGSSPESDVGTDNKLTPPESQ SPLHWLADLAEQKAREEKKENKELTLENQIKEEREQDNSESPNGRTSPLVSQNNEQGSTLRDLLTTTAGKLRVGSTDAGIAFAPVYSMGA PSSKSGRTMPNILDDIIASVVENKIPPSKTSKINVKPELKEEPEESIISAVDENNKLYSDIPHSWICEKHILWLKDYKNSSNWKLFKECW KQGQPAVVSGVHKKMNISLWKAESISLDFGDHQADLLNCKDSIISNANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPA RYEDLLKSLPLPEYCNPEGKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSKAGILKK FEEEDLDDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGD -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for PCDHGB3-JMJD1C |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for PCDHGB3-JMJD1C |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for PCDHGB3-JMJD1C |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2021-Present -The University of Texas Health Science Center at Houston (UTHealth)
Web File Viewing | Emergency Information |Campus Carry|Site Policies