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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:PCM1-NRG1 (FusionGDB2 ID:63338)

Fusion Gene Summary for PCM1-NRG1

check button Fusion gene summary
Fusion gene informationFusion gene name: PCM1-NRG1
Fusion gene ID: 63338
HgeneTgene
Gene symbol

PCM1

NRG1

Gene ID

5108

3084

Gene namepericentriolar material 1neuregulin 1
SynonymsPTC4|RET/PCM-1ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF
Cytomap

8p22

8p12

Type of geneprotein-codingprotein-coding
Descriptionpericentriolar material 1 proteinPCM-1hPCM-1pericentriolar material 1, PCM1pro-neuregulin-1, membrane-bound isoformacetylcholine receptor-inducing activityglial growth factor 2heregulin, alpha (45kD, ERBB2 p185-activator)neu differentiation factorpro-NRG1sensory and motor neuron derived factor
Modification date2020032720200320
UniProtAcc.

Q02297

Ensembl transtripts involved in fusion geneENST00000518936, ENST00000325083, 
ENST00000518537, ENST00000519253, 
ENST00000524226, ENST00000327578, 
ENST00000519301, ENST00000287842, 
ENST00000341377, ENST00000405005, 
ENST00000521670, ENST00000287845, 
ENST00000338921, ENST00000356819, 
ENST00000520407, ENST00000520502, 
ENST00000523079, ENST00000523681, 
ENST00000539990, 
Fusion gene scores* DoF score16 X 16 X 12=307225 X 17 X 14=5950
# samples 1627
** MAII scorelog2(16/3072*10)=-4.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(27/5950*10)=-4.46185835603184
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PCM1 [Title/Abstract] AND NRG1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPCM1(17782289)-NRG1(32611890), # samples:3
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneNRG1

GO:0003222

ventricular trabecula myocardium morphogenesis

17336907

TgeneNRG1

GO:0031334

positive regulation of protein complex assembly

10559227

TgeneNRG1

GO:0038127

ERBB signaling pathway

11389077

TgeneNRG1

GO:0038129

ERBB3 signaling pathway

27353365

TgeneNRG1

GO:0045892

negative regulation of transcription, DNA-templated

15073182

TgeneNRG1

GO:0051048

negative regulation of secretion

10559227

TgeneNRG1

GO:0060379

cardiac muscle cell myoblast differentiation

17336907

TgeneNRG1

GO:0060956

endocardial cell differentiation

17336907


check buttonFusion gene breakpoints across PCM1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across NRG1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4KIRCTCGA-B8-5553-01APCM1chr8

17782289

-NRG1chr8

32611890

+
ChimerDB4KIRCTCGA-B8-5553-01APCM1chr8

17782289

+NRG1chr8

32611890

+


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Fusion Gene ORF analysis for PCM1-NRG1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3CDSENST00000518936ENST00000519301PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-3UTRENST00000518936ENST00000287842PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-3UTRENST00000518936ENST00000341377PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-3UTRENST00000518936ENST00000405005PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-3UTRENST00000518936ENST00000521670PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-intronENST00000518936ENST00000287845PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-intronENST00000518936ENST00000338921PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-intronENST00000518936ENST00000356819PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-intronENST00000518936ENST00000520407PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-intronENST00000518936ENST00000520502PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-intronENST00000518936ENST00000523079PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-intronENST00000518936ENST00000523681PCM1chr8

17782289

+NRG1chr8

32611890

+
3UTR-intronENST00000518936ENST00000539990PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3CDSENST00000325083ENST00000519301PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3CDSENST00000518537ENST00000519301PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3CDSENST00000519253ENST00000519301PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3CDSENST00000524226ENST00000519301PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000325083ENST00000287842PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000325083ENST00000341377PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000325083ENST00000405005PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000325083ENST00000521670PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000518537ENST00000287842PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000518537ENST00000341377PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000518537ENST00000405005PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000518537ENST00000521670PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000519253ENST00000287842PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000519253ENST00000341377PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000519253ENST00000405005PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000519253ENST00000521670PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000524226ENST00000287842PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000524226ENST00000341377PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000524226ENST00000405005PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-3UTRENST00000524226ENST00000521670PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000325083ENST00000287845PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000325083ENST00000338921PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000325083ENST00000356819PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000325083ENST00000520407PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000325083ENST00000520502PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000325083ENST00000523079PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000325083ENST00000523681PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000325083ENST00000539990PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000518537ENST00000287845PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000518537ENST00000338921PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000518537ENST00000356819PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000518537ENST00000520407PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000518537ENST00000520502PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000518537ENST00000523079PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000518537ENST00000523681PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000518537ENST00000539990PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000519253ENST00000287845PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000519253ENST00000338921PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000519253ENST00000356819PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000519253ENST00000520407PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000519253ENST00000520502PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000519253ENST00000523079PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000519253ENST00000523681PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000519253ENST00000539990PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000524226ENST00000287845PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000524226ENST00000338921PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000524226ENST00000356819PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000524226ENST00000520407PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000524226ENST00000520502PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000524226ENST00000523079PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000524226ENST00000523681PCM1chr8

17782289

+NRG1chr8

32611890

+
5UTR-intronENST00000524226ENST00000539990PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-3CDSENST00000327578ENST00000519301PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-3UTRENST00000327578ENST00000287842PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-3UTRENST00000327578ENST00000341377PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-3UTRENST00000327578ENST00000405005PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-3UTRENST00000327578ENST00000521670PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-intronENST00000327578ENST00000287845PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-intronENST00000327578ENST00000338921PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-intronENST00000327578ENST00000356819PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-intronENST00000327578ENST00000520407PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-intronENST00000327578ENST00000520502PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-intronENST00000327578ENST00000523079PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-intronENST00000327578ENST00000523681PCM1chr8

17782289

+NRG1chr8

32611890

+
intron-intronENST00000327578ENST00000539990PCM1chr8

17782289

+NRG1chr8

32611890

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for PCM1-NRG1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
PCM1chr817782289+NRG1chr832611889+2.56E-060.9999975
PCM1chr817782289+NRG1chr832611889+2.56E-060.9999975

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for PCM1-NRG1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:17782289/:32611890)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.NRG1

Q02297

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Direct ligand for ERBB3 and ERBB4 tyrosine kinase receptors. Concomitantly recruits ERBB1 and ERBB2 coreceptors, resulting in ligand-stimulated tyrosine phosphorylation and activation of the ERBB receptors. The multiple isoforms perform diverse functions such as inducing growth and differentiation of epithelial, glial, neuronal, and skeletal muscle cells; inducing expression of acetylcholine receptor in synaptic vesicles during the formation of the neuromuscular junction; stimulating lobuloalveolar budding and milk production in the mammary gland and inducing differentiation of mammary tumor cells; stimulating Schwann cell proliferation; implication in the development of the myocardium such as trabeculation of the developing heart. Isoform 10 may play a role in motor and sensory neuron development. Binds to ERBB4 (PubMed:10867024, PubMed:7902537). Binds to ERBB3 (PubMed:20682778). Acts as a ligand for integrins and binds (via EGF domain) to integrins ITGAV:ITGB3 or ITGA6:ITGB4. Its binding to integrins and subsequent ternary complex formation with integrins and ERRB3 are essential for NRG1-ERBB signaling. Induces the phosphorylation and activation of MAPK3/ERK1, MAPK1/ERK2 and AKT1 (PubMed:20682778). Ligand-dependent ERBB4 endocytosis is essential for the NRG1-mediated activation of these kinases in neurons (By similarity). {ECO:0000250|UniProtKB:P43322, ECO:0000269|PubMed:10867024, ECO:0000269|PubMed:1348215, ECO:0000269|PubMed:20682778, ECO:0000269|PubMed:7902537}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for PCM1-NRG1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for PCM1-NRG1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for PCM1-NRG1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for PCM1-NRG1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource