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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:PGAP1-ZDBF2 (FusionGDB2 ID:64542)

Fusion Gene Summary for PGAP1-ZDBF2

check button Fusion gene summary
Fusion gene informationFusion gene name: PGAP1-ZDBF2
Fusion gene ID: 64542
HgeneTgene
Gene symbol

PGAP1

ZDBF2

Gene ID

80055

57683

Gene namepost-GPI attachment to proteins inositol deacylase 1zinc finger DBF-type containing 2
SynonymsBst1|ISPD3024|MRT42|SPG67Slx9
Cytomap

2q33.1

2q33.3

Type of geneprotein-codingprotein-coding
DescriptionGPI inositol-deacylasepost-GPI attachment to proteins 1post-GPI attachment to proteins factor 1DBF4-type zinc finger-containing protein 2
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000354764, ENST00000409475, 
ENST00000409188, ENST00000485830, 
ENST00000374423, 
Fusion gene scores* DoF score9 X 12 X 7=7562 X 3 X 2=12
# samples 103
** MAII scorelog2(10/756*10)=-2.91838623444635
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(3/12*10)=1.32192809488736
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: PGAP1 [Title/Abstract] AND ZDBF2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPGAP1(197735665)-ZDBF2(207169441), # samples:2
Anticipated loss of major functional domain due to fusion event.PGAP1-ZDBF2 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
PGAP1-ZDBF2 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across PGAP1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across ZDBF2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4HNSCTCGA-CV-7568-01APGAP1chr2

197735665

-ZDBF2chr2

207169441

+
ChimerDB4HNSCTCGA-CV-7568PGAP1chr2

197729711

-ZDBF2chr2

207169441

+
ChimerDB4HNSCTCGA-CV-7568PGAP1chr2

197735664

-ZDBF2chr2

207169440

+
ChimerDB4HNSCTCGA-CV-7568PGAP1chr2

197735665

-ZDBF2chr2

207169441

+
ChimerDB4HNSCTCGA-CV-7568PGAP1chr2

197737165

-ZDBF2chr2

207169441

+


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Fusion Gene ORF analysis for PGAP1-ZDBF2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000354764ENST00000374423PGAP1chr2

197735665

-ZDBF2chr2

207169441

+
Frame-shiftENST00000354764ENST00000374423PGAP1chr2

197735664

-ZDBF2chr2

207169440

+
Frame-shiftENST00000354764ENST00000374423PGAP1chr2

197737165

-ZDBF2chr2

207169441

+
Frame-shiftENST00000409475ENST00000374423PGAP1chr2

197735665

-ZDBF2chr2

207169441

+
Frame-shiftENST00000409475ENST00000374423PGAP1chr2

197735664

-ZDBF2chr2

207169440

+
Frame-shiftENST00000409475ENST00000374423PGAP1chr2

197737165

-ZDBF2chr2

207169441

+
In-frameENST00000354764ENST00000374423PGAP1chr2

197729711

-ZDBF2chr2

207169441

+
intron-3CDSENST00000409188ENST00000374423PGAP1chr2

197735665

-ZDBF2chr2

207169441

+
intron-3CDSENST00000409188ENST00000374423PGAP1chr2

197729711

-ZDBF2chr2

207169441

+
intron-3CDSENST00000409188ENST00000374423PGAP1chr2

197735664

-ZDBF2chr2

207169440

+
intron-3CDSENST00000409188ENST00000374423PGAP1chr2

197737165

-ZDBF2chr2

207169441

+
intron-3CDSENST00000409475ENST00000374423PGAP1chr2

197729711

-ZDBF2chr2

207169441

+
intron-3CDSENST00000485830ENST00000374423PGAP1chr2

197735665

-ZDBF2chr2

207169441

+
intron-3CDSENST00000485830ENST00000374423PGAP1chr2

197729711

-ZDBF2chr2

207169441

+
intron-3CDSENST00000485830ENST00000374423PGAP1chr2

197735664

-ZDBF2chr2

207169440

+
intron-3CDSENST00000485830ENST00000374423PGAP1chr2

197737165

-ZDBF2chr2

207169441

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000354764PGAP1chr2197729711-ENST00000374423ZDBF2chr2207169441+116841976203188522273

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000354764ENST00000374423PGAP1chr2197729711-ZDBF2chr2207169441+0.0019682850.9980317

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Fusion Genomic Features for PGAP1-ZDBF2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
PGAP1chr2197735664-ZDBF2chr2207169440+2.65E-070.99999976
PGAP1chr2197735664-ZDBF2chr2207169440+2.65E-070.99999976
PGAP1chr2197729710-ZDBF2chr2207169440+1.53E-070.9999999
PGAP1chr2197737164-ZDBF2chr2207169440+4.79E-091
PGAP1chr2197735664-ZDBF2chr2207169440+2.65E-070.99999976
PGAP1chr2197735664-ZDBF2chr2207169440+2.65E-070.99999976
PGAP1chr2197729710-ZDBF2chr2207169440+1.53E-070.9999999
PGAP1chr2197737164-ZDBF2chr2207169440+4.79E-091

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for PGAP1-ZDBF2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:197735665/chr2:207169441)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-20271_11620923.0Topological domainCytoplasmic
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-202712_32620923.0TransmembraneHelical
TgeneZDBF2chr2:197729711chr2:207169441ENST00000374423351080_1110622355.0Coiled coilOntology_term=ECO:0000255
TgeneZDBF2chr2:197729711chr2:207169441ENST0000037442335636_660622355.0Coiled coilOntology_term=ECO:0000255
TgeneZDBF2chr2:197729711chr2:207169441ENST00000374423352250_2253622355.0Compositional biasNote=Poly-Lys
TgeneZDBF2chr2:197729711chr2:207169441ENST000003744233588_94622355.0Compositional biasNote=Poly-Glu

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-202733_641620923.0Topological domainLumenal
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027663_668620923.0Topological domainCytoplasmic
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027690_733620923.0Topological domainLumenal
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027755_817620923.0Topological domainCytoplasmic
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027839_853620923.0Topological domainLumenal
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027875_893620923.0Topological domainCytoplasmic
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027915_922620923.0Topological domainLumenal
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-1201_110593.0Topological domainCytoplasmic
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-12033_6410593.0Topological domainLumenal
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120663_6680593.0Topological domainCytoplasmic
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120690_7330593.0Topological domainLumenal
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120755_8170593.0Topological domainCytoplasmic
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120839_8530593.0Topological domainLumenal
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120875_8930593.0Topological domainCytoplasmic
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120915_9220593.0Topological domainLumenal
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027642_662620923.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027669_689620923.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027734_754620923.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027818_838620923.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027854_874620923.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000354764-2027894_914620923.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-12012_320593.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120642_6620593.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120669_6890593.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120734_7540593.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120818_8380593.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120854_8740593.0TransmembraneHelical
HgenePGAP1chr2:197729711chr2:207169441ENST00000409475-120894_9140593.0TransmembraneHelical
TgeneZDBF2chr2:197729711chr2:207169441ENST00000374423351_50622355.0Zinc fingerDBF4-type


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Fusion Gene Sequence for PGAP1-ZDBF2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>64542_64542_1_PGAP1-ZDBF2_PGAP1_chr2_197729711_ENST00000354764_ZDBF2_chr2_207169441_ENST00000374423_length(transcript)=11684nt_BP=1976nt
CGGCTCCGGGGGTGGCGGTCGGACAGTGTCTAGCACGCTCAGTCCGGGCTTGGGGCCCCGCGGCGGAGAAGGAGGTAGAGGGGGCGGCGG
CGGCGGCGGCGGTGGTGGCGGCACCATGTTTCTTCACTCAGTTAATCTCTGGAACCTGGCGTTTTATGTCTTCATGGTCTTTCTGGCAAC
CCTGGGGCTGTGGGATGTCTTCTTCGGCTTCGAGGAGAATAAGTGCAGTATGAGCTACATGTTTGAGTACCCGGAGTATCAGAAAATAGA
ACTTCCAAAGAAACTGGCAAAACGCTATCCCGCATATGAGTTGTATCTTTATGGAGAGGGATCCTATGCTGAAGAACACAAAATTCTCCC
TTTGACGGGTATTCCAGTTCTCTTTCTTCCTGGTAATGCTGGAAGTTATAAGCAAGTTCGTTCTATTGGCTCCATTGCACTTAGAAAAGC
AGAGGACATTGACTTCAAGTACCACTTTGACTTCTTTAGTGTGAACTTCAATGAAGAACTGGTGGCTTTGTATGGTGGAAGTCTTCAGAA
GCAGACCAAGTTTGTACATGAATGTATTAAAACAATTCTCAAACTCTATAAGGGTCAAGAATTTGCTCCAAAAAGTGTGGCAATAATTGG
TCATTCTATGGGTGGCCTTGTTGCAAGAGCATTGCTTACACTGAAAAATTTTAAGCATGATCTGATAAATCTTCTTATTACACAAGCCAC
ACCTCATGTTGCTCCTGTGATGCCATTAGATCGTTTCATTACAGATTTTTATACGACTGTAAACAACTATTGGATTCTAAATGCTCGACA
CATAAATTTAACCACACTTTCTGTAGCTGGAGGATTCCGGGATTACCAAGTTCGTTCAGGATTGACTTTTCTACCAAAATTAAGCCATCA
TACCAGTGCCTTATCTGTTGTGAGTTCAGCAGTGCCTAAGACCTGGGTCTCAACAGACCACCTCTCCATTGTGTGGTGTAAACAATTGCA
GTTGACTACAGTTCGAGCATTCTTTGATCTTATTGATGCTGATACTAAACAAATAACTCAAAATTCCAAGAAGAAACTGTCAGTTTTGTA
TCACCACTTTATAAGACACCCATCAAAACATTTTGAGGAAAATCCAGCTATAATTTCTGACTTAACAGGGACATCTATGTGGGTTCTAGT
AAAAGTGTCCAAATGGACCTATGTAGCTTACAACGAATCTGAGAAGATATATTTTACATTTCCTCTTGAAAATCATAGAAAAATCTACAC
TCATGTCTATTGTCAGAGCACTATGCTGGATACAAATAGTTGGATTTTTGCTTGCATAAACAGCACTTCTATGTGCCTGCAAGGGGTTGA
TTTATCATGGAAAGCTGAACTGCTGCCAACAATTAAGTATCTGACATTAAGACTTCAAGACTATCCATCTTTGTCTCATCTTGTTGTTTA
TGTACCATCTGTTCGTGGAAGTAAGTTTGTTGTAGATTGTGAATTCTTTAAAAAAGAGAAAAGATACATACAGCTTCCTGTAACTCATCT
TTTTTCCTTTGGATTGTCTTCAAGGAAAGTGGTGTTAAATACAAATGGCCTATACTACAATCTAGAGCTTCTGAACTTTGGACAGATATA
CCAAGCTTTTAAAATCAACGTGGTAAGCAAGTGCTCAGCAGTCAAAGAAGAAATAACCAGTATCTATAGACTTCATATTCCTTGGTCTTA
TGAAGATTCACTAACCATTGCACAGGCTCCATCTTCCACAGAAATTTCTCTGAAACTCCATATTGCTCAACCAGAAAACAATACCCATGT
GGCATTATTTAAAATGTACACGTCATCAGACTGTCGGTACGAGGTGACAGTTAAGACTTCCTTTTCACAAATACTTGGACAGGTAGTTAG
ATTTCATGGTGGAGCTCTTCCTGCTTATGTCGTATCTAATATCCTTCTTGCTTATAGAGGACAGTTATATTCTCTTTTCTCAACAGTTCA
ACACAAGATGAGACACATGTGAATACTGGGTCATCGTCTGAAGTGGTGCATTTGGATGATGCTTTTTCTGAAGAAGAGGAAGAGGATGAG
GATAAGGTTGAGGATGAGGATGCTACCGAAGAGAGACCATCCGAGGTTTCAGAACCTATTGAAGAGTTACATTCCAGACCTCATAAATCT
CAGGAAGGCACGCAGGAGGTTTCAGTTCGACCATCAGTTATTCAAAAACTGGAGAAGGGACAGCAGCAGCCCTTGGAGTTTGTTCATAAA
ATTGGGGCCAGTGTGAGAAAATGTAACCTAGTAGATATTGGTCAGGCTACAAATAATAGAAGCAACTTGGTACGCCCCCCAGTGATTTGT
AATGCTCCTGCTAGTTGTTTACCTGAAAGCTCTAACGATAGACCAGTTACAGCTAATACAACTAGTTTACCACCAGCAGCTCATTTGGAT
TCAGTTAGCAAATGTGACCCAAACAAAGTTGAGAAATATCTTGAACAGCCAGATGGGGCCTCTAGAAATCCTGTGCCATCATCCCATGTA
GAAACTACTTCATTTTCGTATCAGAAACATAAAGAATCAAATAGGAAATCTTTACGCATGAATTCAGATAAGTTGGTTTTGTGGAAAGAT
GTAAAATCTCAGGGTAAAACTTTATCAGCTGGCTTGAAATTCCATGAACGCATGGGTACTAAGGGCTCCTTAAGAGTTAAATCTCCTTCC
AAATTAGCAGTAAACCCGAATAAAACTGACATGCCTTCTAATAAAGGAATCTTTGAAGATACTATTGCAAAGAACCATGAGGAATTCTTT
TCTAACATGGATTGTACCCAAGAAGAAAAGCATTTGGTTTTTAACAAGACAGCCTTTTGGGAACAGAAGTGCTCAGTGAGTTCTGAAATG
AAGTTTGATTGTATCTCTCTTCAGTCAGCATCTGATCAGCCCCAAGAGACTGCACAAGACTTAAGTCTTTGGAAGGAGGAGCAAATTGAC
CAAGAAGATAACTATGAGTCTAGAGGTTCAGAAATGAGTTTTGATTGCAGTTCCTCTTTTCATTCACTGACTGACCAATCTAAAGTGAGT
GCCAAAGAAGTAAACCTTTCCAAGGAAGTACGTACTGATGTACAGTATAAGAATAATAAATCTTATGTTTCTAAAATAAGTTCTGATTGT
GATGACATTCTTCACTTGGTTACCAACCAATCCCAAATGATTGTTAAAGAAATAAGTCTTCAGAATGCAAGGCATATTAGCCTGGTTGAC
CAAAGCTATGAATCTAGTAGTTCTGAAACGAATTTTGATTGTGATGCTTCACCTCAGTCCACTAGTGACTACCCCCAACAATCTGTAACA
GAAGTAAACCTTCCTAAGGAAGTGCACATTGGTTTGGTTGATAAGAACTATGGTTCCAGTAGCTCTGAAGTAAGTGCTGATTCTGTTTTC
CCACTGCAGTCAGTGGTTGACAGACCCCCAGTGGCTGTCACAGAAACAAAACTTCGGAAGAAGGCTCATACCAGCTTGGTTGATAACTAT
GGATCGAGTTGTTCTGAAACAAGTTTTGATTGTGATGTTTCTCTTGAGTCAGTAGTTGATCATCCCCAACTGACTGTCAAAGGAAGAAAC
CTGAAAGGTAGACAAGTCCACCTAAAACATAAGAAGCGTAAACCCAGTAGTGCTAAAGCACATCTTGATTGTGATGTCTCACTTGGGACA
GTTGCAGATGAATCCCAGAGGGCTGTTGAAAAGATAAATCTTCTGAAGGAGAAGAATGCTGACCTTATGGATATGAACTGTGAATCCCAT
GGTCCTGAAATGGGTTTTCAGGCTGATGCTCAATTAGCTGACCAGTCTCAAGTAGCCGAAATAGAGCGTCAGAAAGTGGATGTTGACCTT
GAGAATAAGAGTGTTCAGTCTAGCCGTTCTTCTCTGAGTTCTGATTCTCCGGCTTCTCTTTATCATTCAGCTCATGATGAGCCTCAAGAA
GCTTTGGATGAAGTAAATCTTAAAGAGTTAAATATTGACATGGAAGTTAGGAGCTATGATTGCTCCAGCTCTGAGTTGACTTTTGATTCT
GACCCGCCTCTTCTGTCAGTTACTGAGCAGTCTCATCTGGATGCTGAAGGAAAAGAACGGCACATTGACCTGGAAGATGAGAGCTGTGAG
TCAGATAGTTCTGAAATAACTTTTGATTCTGATATTCCTCTTTATTCAGTAATTGACCAACCTGAAGTAGCTGTTTATGAGGAAGAAACT
GTTGATCTGGAAAGTAAAAGTAATGAATCTTGTGTCTCTGAAATAACTTTTGATTCTGATATTCCTCTTCATTCAGGAAATGATCACCCT
GAAGTAGCTGTTAAAGAAGTAATTCAGAAAGAAGAGTACATTCACTTAGAAAGGAAGAATGATGAACCCAGTGGTTCTGAAATAAGTTCG
GATTCCCATGCCCCTCTTCATTCAGTGACTAATTCTCCCGAAGTAGCTGTTAAAAAGCTAAATCCTCAAAAAGAAGAGCAGGTACACTTA
GAAAATAAGGAAAATGAACCTATTGATTCTGAAGTAAGTTTGGATTATAATATCATTTTTCATTCAGTGACTGGACGTTCTGAAGATCCC
ATTAAAGAAATAAGCCTTCACACAAAAGAGCACATGTACTTAGAAAATAAGAGTGTTTTTGAAACAAGTTTGGATTCTGATGTCCCTCTT
CAGGCAGCGACTCACAAACCTGAAGTAATTGTCAAAGAAACATGGCTTCAAAGAGAAAAGCACGCTGAATTCCAAGGTAGAAGTACTGAA
TTCAGTGGTTCAAAAACAAGTTTAGATTCTGGTGTCCCTCATTATTCAGTAACTGAACCTCAAGTAGCTGTTAACAAAATAAACAGAAAG
AAGCAATATGTTCTAGAAAACAAGAATGATAAATGTAGTGGTTCTGAAATAATTTTGGATTCTAATGTTCCACCTCAGTCAATGACTGAC
CAACCTCAACTAGCTTTTTTGAAGGAAAAACATGTTAATCTGAAGGACAAAAACAGTAAATCAGGTGATTCTAAAATAACTTTTGATTCT
GAACAACTTCAGGAAGCGGTTAAAAAAATAGACCAATGGAAGGAAGAGGTTATTGGCCTGAAAAATAAGATTAATGAACCTAGTACTTAT
AAATTAATACATCATCCTGATGTTTCTGTCCAATCTGTGGCTGATCAACCCAAAGTAGCTATTAAACATGTGAACCTTGGGAATGAAAAC
CATATGTACTTGGAAGTTAAGAACAGCCAATATAGTTGTTCAGAAATGAATTTGGATTCTGGTTTCTTGGGTCAGTCAATAGTCAATCGA
CCTCAAATAACTATTTTGGAGCAGGAGCACATTGAACTAGAAGGTAAGCACAATCAATGTTGTGGTTCTGAAGTAAGTTTTGATTCTGAT
GACCCTCTTCAGTCAGTGGCTGACCGGCTGAGAGAAACCGTTAAAGAAATAAGCCTTTGGAAGGATGAAGAAGTTGACACGGAAGATAGG
AGAAATGAAGCTAAGGGTTTTGAAATTATGTATGATTCTGATGTTCTTCAGCCAGTGGCTGGCCAACCTGAAGAAGTAGTTAAGGAGGTC
AGTCTTTGGAAAGAGCATGTTGACTTGGAAAATAAGATTGTCAAACCTACAGATTCCAGAATAAATTTTGATTCTCATGAACCCCTTCAG
TCCGTAACTAATAAAATTCCAGGGGCGAATAAAGAAATAAATCTTTTGAGGGAGGAACATGTTTGTCTGGATGATAAGGGCTATGTGCCC
AGTGATTCTGAAATAATTTATGTTTCAAATATCCCTCTTCAGTCAGTGATAAAACAACCACACATTTTGGAAGAGGAGCATGCCAGTCTG
GAAGATAAGAGCAGTAATTCTTATAGTCCTGAAGAAAGTTCTGATTCCAATGACTCTTTTCAGGCAGCAGCAGATGAGCTTCAAAAACCT
GTCAAAGAAATAAATCTTTGGAAGGAAGACCATATTTACCTGGAAGATAAGAGCTATAAATTAGGTGATTTTGATGTAAGTTATGCTTCT
CATATTCCTGTTCAGTTTGTGACTGATCAATCTTCTGTACCTGTCAAAGAAATAAACTTGCAAAAGAAGGATCATAATGATCTAGAAAAT
AAGAACTGTGAAGTCTGTGGTTCTGAAATAAAATGTCATTCTTGTGTTCATCTTCAGTCAGAAGTTGACCAACCTCAAGTGTCTTACAAA
GAGGCAGACCTTCAGAAGGAAGAGCATGTTGTCATGGAAGAAAAGACCGATCAACCTAGTGATTCAGAAATGATGTATGATTCTGATGTT
CCTTTTCAAATAGTAGTTAACCAATTTCCAGGATCAGTCAAAGAAACCCACCTTCCAAAGGTGGTACTTGTGGATCTGGTGCCCGGTGAT
AGTGATTATGAAGTAATTTCAGATGATATTCCCCTTCAGTTAGTGACTGACCCACCTCAGTTGACTGTCAAAGATATCAGCTGTATAAAT
ACAGAATGTATTGATATAGAAGATAAGAGCTGTGACTTTTTTGGTTCTGAAGTCAGATGTAATTGTAAAGCCTCTACTCCCTCAATGACA
AACCAATGCAAAGAGACTTTCAAAATAATAAACCGGAAGAAGGACTATATTATTCTGGGAGAGCCAAGTTGTCAATCTTGTGGTTCTGAA
ATGAATTTTAATGTTGATGCCTCTGATCAGTCCATGACTTACGAGTCACAAGGACCTGATGAGAAAATGGTGAAATATATTGATTCAGAA
GATAAGAGCTGTGGATATAATGGTTCTAAAGGAAAATTTAATTTGGAAGACACTTCTCATCGAACGACTCACCGACTGCAGAAAGCTCAC
AAAGAAGCCAGTCTTCGGAAGGATCCAAGAAATGCTGGCCTAAAAGGTAAGAGCTGTCAGTCTAGTGCTTCTGCAGTGGATTTTGGTGCC
TCTTCCAAGTCAGCGCTCCATCGAAGGGCTGATAAAAAAAAACGTTCGAAGCTAAAACATAGAGATCTAGAAGTGAGCTGTGAACCGGAT
GGTTTTGAGATGAATTTTCAGTGTGCTCCCCCTCTTCCATCTGATACTGATCAGCCTCAAGAAACTGTTAAGAAAAGACACCCTTGTAAG
AAGGTATCTTCTGACTTGAAAGAAAAGAACCATGATTCCCAGTCAAGCTCTGTTCTCAAGGTTGATTCTGTAAGGAACCTGAAAAAAGCA
AAGGATGTCATAGAGGATAATCCTGATGAACCAGTTCTTGAAGCCTTGCCTCATGTACCTCCTTCATTTGTGGGGAAAACATGGTCTCAG
ATAATGAGAGAAGATGACATAAAAATTAATGCTCTGGTGAAGGAGTTTAGGGAAGGTCGTTTCCACTGTTACTTTGATGATGACTGTGAG
ACCAAAAAAGTTTCTTCGAAGGGGAAAAAAAAGGTTACCTGGGCTGACTTGCAAGGTAAGGAGGACACTGCACCAACTCAAGCTGTGTCA
GAGAGTGATGATATTGTCTGTGGTATTTCAGATATTGATGACTTGTCAGTGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAG
AGGCCTCCTAAGCAAAAGGGGCGTGTGGCTTCTCAATGCCAGACAGCGAAAATCAGCCATAGTACTCAGACCAGTTGTAAGAATTACCCA
GTGATGAAAAGAAAAATAATTAGACAAGAGGAAGACCCACCAAAAAGTAAGTGTTCACGTTTACAGGATGACAGAAAAACCAAAAAGAAA
GTCAAAATTGGGACAGTTGAATTTCCTGCATCATGTACTAAAGTTTTGAAGCCTATGCAACCCAAAGCCTTAGTCTGTGTTCTTTCTTCT
TTAAATATTAAACTGAAAGAGGGTGAAGGCCTTCCTTTCCCTAAAATGAGGCACCATAGTTGGGATAATGATATTCGGTTTATATGCAAA
TATAAACGGAATATCTTTGATTATTATGAGCCCTTGATTAAGCAAATTGTAATTAGTCCTCCCCTGAGTGTAATAGTACCAGAGTTTGAG
AGGCGTAACTGGGTTAAAATTCATTTTAATAGGAGCAACCAAAACTCCAGTGCAGGAGATAATGATGCTGATGGACAAGGCTCTGCTTCA
GCGCCTTTAATGGCAGTGCCGGCAAGATATGGATTTAATTCACATCAGGGAACCAGTGACTCTTCTCTGTTTCTGGAAGAATCAAAGGTT
CTGCATGCTCGTGAGCTTCCAAAGAAAAGAAATTTCCAGCTAACATTTTTAAATCATGATGTTGTCAAAATCTCTCCAAAATCAGTTAGA
AATAAGCTTTTGGAAAGTCAAAGTAAAAAGAAAATTCATGGAAAGAGGGTGACAACTAGTAGTAATAAGCTAGGTTTTCCCAAAAAGGTT
TATAAACCAATTATTCTCCAGCAAAAACCCAGAAAAGCTTCAGAGAAACAGTCAATTTGGATTCGGACCAAACCAAGTGATATCATTAGA
AAGTATATTTCGAAATACTCTGTCTTTTTACGTCATAGATATCAGTCCAGGAGCGCTTTTCTTGGAAGGTATCTGAAGAAGAAAAAATCT
GTTGTCAGTAGGCTAAAGAAGGCGAAGAGAACAGCTAAAGTGCTTTTGAACTCTTCAGTTCCACCAGCTGGTGCCGAAGAGCTGTCAAGC
GCTATGGCAAATCCTCCTCCAAAGCGACCTGTGCGGGCTTCTTGCCGCGTTGCAAGAAGGAGGAAGAAGACTGATGAAAGCTACCATGGC
CGACAGAAAGGTCCTTCTACACCTGTGAGAGCATATGATCTGAGAAGCTCATCTTGTTTACAACAACGTGAGAGAATGATGACTCGGCTA
GCAAACAAACTGAGAGGTAATGAGGTAAAATAGAAGTTGGTTTTGTGTTCAGGCTAGTTGAGGATTCAGTACTTCAGTTGAAATATATTT
GGTACTTTGTGCACACAGCTTTCCCAGCTTTGGTGAGAAAACTAATCTTGAACTATTTTGCTATAAATATTATTTTTCAGAATTTTTATA
TTCATTTAAAATTAGTGTTTAGAGTCCTTTCATTTTAAGATTCAGAAACAGCCTTTGTCCAACATTTTCTGTAGAAGAACTTCATCTTAA
TTTATGTCACAAAATAATTTAGCACCGTATATAGAATTTTGTTCCTCAAATCATATCCCTCTTATTTTTTATGATTATCTCTCTCATGCC
AGCAAATTTAACATTGTGAGAATGAATATAGCAAACTTATTAAAAAGAAGGAATTATAATGAATTATGTCAACTTTTGAATGGGGTTGAC
TTAAATGAATACAAACAAAATATAAGTTTTCTTTCTTTTTAAAGCATTCCAGAAAATGAGATTCCATAATCTTTAATACAGTTTTTAAAA
ACTGGTGATTTTTTTTATGCATAGCACAAACTCCTCCTGCTTCATTTAAATTGGATCTGCAAGTCTCTAACTTTTATCATTTGGACACAT
GCACACATACAGTCTCTAGGTTTTTTGGGTTAGCCTTATTAGATCTTAAAGGGGAAAATAATTTTGCCCATGTGTTTAGGCATTCCCCCC
CTTTTTTTTAACCACCTTTACTCTCTTCTACATGAAGAGTTGGTGGCTTAATATGAAAATCCAGGTTATTTTGTGGCCTTATCCCCTAAA
AATATTTTAGGCATTACCATATCAGTTTTTATTTTTATGTTTATTTATTATTATTATTTTTTGAGACAGAGTCTCACTGTCTTGCCCAGG
CTGGAGTGCAGTGGCCTGAACTTAGCTCACCGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTAAGCCTCTCGAGTAGCTGGG
ACTACAGGCGTGCGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGTTGGGGGTTTCACTATGTTGGCCAGGCTGGTCTCAAACT
CCTGACCTTGTGGTCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGTCATGAGCCACCATGCCCAGCCTACCATATCAGTTTTTA
ATAACTTGAACTGAAATTATTGGCTTGGTAATATTTGGGCAGGCCATTAATTCTCATTAGAAAATTACTTAATATTTCAAAAAATTGAAT
AAAACTGGTAATCTTTGTGGAGGCCCATTTTGCAAGTGGAAACCTGTATTTATACATTAGTTTGTCTTTAACTATTTGTTAACAGATTTT
AACAGTTCAAATGAAAGATGTTAACGAGATGCAGTTTGAGTCTGGGATACTCAGAATAGATCCAGAACCTTTATTCAGGGACACTGGTTG
AGTTGGTACAGATGCATTCAGTTGTCATTCATTCGTGTTAAGCCAAGATCCTGGATCTTCTATCATTAATGTTAAGAGGAAACATGAATT
ACAACTATATTGTATGACTGCCATATTTTATTGAAACTAAGGTCAATGTTGAACCATATCTTGATTTCAGAATTTAAAATGTGTTACCTT
AGAAATAATGAAATATAGTGTAACAGTTGGTTTCTAAATGTGGTTTTATTTCAGGGGCCATTATTTAACCTGTGTGTATGCTATGATGGA
GTTCTTTTGTGATTTCTTTACTTCTAAATTTAAATAGTAATTATGTTTAAAAACAAATGTTTTTGTCTTTAGTTGCAAAGCAGCATATAT
CTCATTTCCTTCAACCTTGCCTCCTCATACACAAATATATTTTCATTTCTTAAAAGATCACTGGGCCAGTAGTTCAAAATAATCCTCCAA
TTTTAATTTAGGAACAAAGCTTTGTCCTACTGACTAGGAAGTAAACAAACAGCTGATATATAAGATATTTGTGGGTATTGGTGTCTTTTT
TCCCTATGGAATAGACACATAGTTCCCTTAAATATTATTAATAGACATTCTACAGTCTTTCAGTGTAAGTTTAAAAGCAAGAGATCAAAT
GAAAATGTGTACTATGTACCTATGATGTGTCATATCGTGATTACATCATGCAGAGAGAACAGTTCCTGTAATTCAAGTAATTAAAATTTC
AAGTTGTAAAAATGTTACCATTTTCACATTGGAAGCCCTTCTAAGTACCATTTTCATTGGGGGCAGGGAGAAGGTTTATATTTAAATTTT
ATATTACCAGACATAAAAGTACAGTGCAGTACTGATGATTTTGTTTAAAGTTTTTGAAATGTTTTGTTTACTAAGTTCTTGTAATCATTA
TTTTAGACAAGCTTGAAAACTTGAAATTGTTGAAACTTATAATTTAAATTAAATTGGAAATTACTTTCAGAATTTGGTAGTATACAAGAT
GTGCCCCTTTGTCTAAATAAATGTTGGCTTAATTTGCAGAATAGATAAAACAATTGATGTTTTTGTGTGTTCAAGAATGCATTAAATTCT
TTTAATAGTAAAAAGTCAAATTACGACCATAATGAGTATTTTAATCTTGTTCTTGTTCAGTATTTTGCGTAGATTTTTATTGTAATTGTC
CTGAGTTCTACAGTATGTGAACAATATCGTGTGAAGTGTGTTTTTGCATTTGTGCATTTAAATTATTTATGTAACTAGGGCTGTGAGTAA
CACTTTTTTTTTTTTTTTTTGGTTAAAGAAAAGCTATATTTAAATATTCAAATAATTATATATTTCCATGTAAAACTAATGTGAAGACTA

>64542_64542_1_PGAP1-ZDBF2_PGAP1_chr2_197729711_ENST00000354764_ZDBF2_chr2_207169441_ENST00000374423_length(amino acids)=2273AA_BP=
MDDAFSEEEEEDEDKVEDEDATEERPSEVSEPIEELHSRPHKSQEGTQEVSVRPSVIQKLEKGQQQPLEFVHKIGASVRKCNLVDIGQAT
NNRSNLVRPPVICNAPASCLPESSNDRPVTANTTSLPPAAHLDSVSKCDPNKVEKYLEQPDGASRNPVPSSHVETTSFSYQKHKESNRKS
LRMNSDKLVLWKDVKSQGKTLSAGLKFHERMGTKGSLRVKSPSKLAVNPNKTDMPSNKGIFEDTIAKNHEEFFSNMDCTQEEKHLVFNKT
AFWEQKCSVSSEMKFDCISLQSASDQPQETAQDLSLWKEEQIDQEDNYESRGSEMSFDCSSSFHSLTDQSKVSAKEVNLSKEVRTDVQYK
NNKSYVSKISSDCDDILHLVTNQSQMIVKEISLQNARHISLVDQSYESSSSETNFDCDASPQSTSDYPQQSVTEVNLPKEVHIGLVDKNY
GSSSSEVSADSVFPLQSVVDRPPVAVTETKLRKKAHTSLVDNYGSSCSETSFDCDVSLESVVDHPQLTVKGRNLKGRQVHLKHKKRKPSS
AKAHLDCDVSLGTVADESQRAVEKINLLKEKNADLMDMNCESHGPEMGFQADAQLADQSQVAEIERQKVDVDLENKSVQSSRSSLSSDSP
ASLYHSAHDEPQEALDEVNLKELNIDMEVRSYDCSSSELTFDSDPPLLSVTEQSHLDAEGKERHIDLEDESCESDSSEITFDSDIPLYSV
IDQPEVAVYEEETVDLESKSNESCVSEITFDSDIPLHSGNDHPEVAVKEVIQKEEYIHLERKNDEPSGSEISSDSHAPLHSVTNSPEVAV
KKLNPQKEEQVHLENKENEPIDSEVSLDYNIIFHSVTGRSEDPIKEISLHTKEHMYLENKSVFETSLDSDVPLQAATHKPEVIVKETWLQ
REKHAEFQGRSTEFSGSKTSLDSGVPHYSVTEPQVAVNKINRKKQYVLENKNDKCSGSEIILDSNVPPQSMTDQPQLAFLKEKHVNLKDK
NSKSGDSKITFDSEQLQEAVKKIDQWKEEVIGLKNKINEPSTYKLIHHPDVSVQSVADQPKVAIKHVNLGNENHMYLEVKNSQYSCSEMN
LDSGFLGQSIVNRPQITILEQEHIELEGKHNQCCGSEVSFDSDDPLQSVADRLRETVKEISLWKDEEVDTEDRRNEAKGFEIMYDSDVLQ
PVAGQPEEVVKEVSLWKEHVDLENKIVKPTDSRINFDSHEPLQSVTNKIPGANKEINLLREEHVCLDDKGYVPSDSEIIYVSNIPLQSVI
KQPHILEEEHASLEDKSSNSYSPEESSDSNDSFQAAADELQKPVKEINLWKEDHIYLEDKSYKLGDFDVSYASHIPVQFVTDQSSVPVKE
INLQKKDHNDLENKNCEVCGSEIKCHSCVHLQSEVDQPQVSYKEADLQKEEHVVMEEKTDQPSDSEMMYDSDVPFQIVVNQFPGSVKETH
LPKVVLVDLVPGDSDYEVISDDIPLQLVTDPPQLTVKDISCINTECIDIEDKSCDFFGSEVRCNCKASTPSMTNQCKETFKIINRKKDYI
ILGEPSCQSCGSEMNFNVDASDQSMTYESQGPDEKMVKYIDSEDKSCGYNGSKGKFNLEDTSHRTTHRLQKAHKEASLRKDPRNAGLKGK
SCQSSASAVDFGASSKSALHRRADKKKRSKLKHRDLEVSCEPDGFEMNFQCAPPLPSDTDQPQETVKKRHPCKKVSSDLKEKNHDSQSSS
VLKVDSVRNLKKAKDVIEDNPDEPVLEALPHVPPSFVGKTWSQIMREDDIKINALVKEFREGRFHCYFDDDCETKKVSSKGKKKVTWADL
QGKEDTAPTQAVSESDDIVCGISDIDDLSVALDKPCHRHPPAERPPKQKGRVASQCQTAKISHSTQTSCKNYPVMKRKIIRQEEDPPKSK
CSRLQDDRKTKKKVKIGTVEFPASCTKVLKPMQPKALVCVLSSLNIKLKEGEGLPFPKMRHHSWDNDIRFICKYKRNIFDYYEPLIKQIV
ISPPLSVIVPEFERRNWVKIHFNRSNQNSSAGDNDADGQGSASAPLMAVPARYGFNSHQGTSDSSLFLEESKVLHARELPKKRNFQLTFL
NHDVVKISPKSVRNKLLESQSKKKIHGKRVTTSSNKLGFPKKVYKPIILQQKPRKASEKQSIWIRTKPSDIIRKYISKYSVFLRHRYQSR
SAFLGRYLKKKKSVVSRLKKAKRTAKVLLNSSVPPAGAEELSSAMANPPPKRPVRASCRVARRRKKTDESYHGRQKGPSTPVRAYDLRSS

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Fusion Gene PPI Analysis for PGAP1-ZDBF2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for PGAP1-ZDBF2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for PGAP1-ZDBF2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource