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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:PGAP3-MLPH (FusionGDB2 ID:64555)

Fusion Gene Summary for PGAP3-MLPH

check button Fusion gene summary
Fusion gene informationFusion gene name: PGAP3-MLPH
Fusion gene ID: 64555
HgeneTgene
Gene symbol

PGAP3

MLPH

Gene ID

93210

79083

Gene namepost-GPI attachment to proteins phospholipase 3melanophilin
SynonymsAGLA546|CAB2|PERLD1|PP1498|hCOS16SLAC2-A
Cytomap

17q12

2q37.3

Type of geneprotein-codingprotein-coding
Descriptionpost-GPI attachment to proteins factor 3COS16 homologgene coamplified with ERBB2 proteinper1-like domain containing 1post-GPI attachment to proteins 3melanophilinexophilin-3slp homolog lacking C2 domains asynaptotagmin-like protein 2a
Modification date2020032720200320
UniProtAcc.

Q9BV36

Ensembl transtripts involved in fusion geneENST00000300658, ENST00000429199, 
ENST00000579146, ENST00000378011, 
ENST00000445024, ENST00000338530, 
ENST00000409373, ENST00000468178, 
ENST00000264605, ENST00000410032, 
Fusion gene scores* DoF score18 X 8 X 9=129612 X 13 X 9=1404
# samples 2714
** MAII scorelog2(27/1296*10)=-2.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(14/1404*10)=-3.32604420335959
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PGAP3 [Title/Abstract] AND MLPH [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPGAP3(37840849)-MLPH(238455248), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across PGAP3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across MLPH (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4OVTCGA-23-1111PGAP3chr17

37840849

-MLPHchr2

238455248

+


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Fusion Gene ORF analysis for PGAP3-MLPH

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000300658ENST00000445024PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-3UTRENST00000429199ENST00000445024PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-3UTRENST00000579146ENST00000445024PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-intronENST00000300658ENST00000338530PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-intronENST00000300658ENST00000409373PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-intronENST00000300658ENST00000468178PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-intronENST00000429199ENST00000338530PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-intronENST00000429199ENST00000409373PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-intronENST00000429199ENST00000468178PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-intronENST00000579146ENST00000338530PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-intronENST00000579146ENST00000409373PGAP3chr17

37840849

-MLPHchr2

238455248

+
5CDS-intronENST00000579146ENST00000468178PGAP3chr17

37840849

-MLPHchr2

238455248

+
In-frameENST00000300658ENST00000264605PGAP3chr17

37840849

-MLPHchr2

238455248

+
In-frameENST00000300658ENST00000410032PGAP3chr17

37840849

-MLPHchr2

238455248

+
In-frameENST00000429199ENST00000264605PGAP3chr17

37840849

-MLPHchr2

238455248

+
In-frameENST00000429199ENST00000410032PGAP3chr17

37840849

-MLPHchr2

238455248

+
In-frameENST00000579146ENST00000264605PGAP3chr17

37840849

-MLPHchr2

238455248

+
In-frameENST00000579146ENST00000410032PGAP3chr17

37840849

-MLPHchr2

238455248

+
intron-3CDSENST00000378011ENST00000264605PGAP3chr17

37840849

-MLPHchr2

238455248

+
intron-3CDSENST00000378011ENST00000410032PGAP3chr17

37840849

-MLPHchr2

238455248

+
intron-3UTRENST00000378011ENST00000445024PGAP3chr17

37840849

-MLPHchr2

238455248

+
intron-intronENST00000378011ENST00000338530PGAP3chr17

37840849

-MLPHchr2

238455248

+
intron-intronENST00000378011ENST00000409373PGAP3chr17

37840849

-MLPHchr2

238455248

+
intron-intronENST00000378011ENST00000468178PGAP3chr17

37840849

-MLPHchr2

238455248

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000579146PGAP3chr1737840849-ENST00000410032MLPHchr2238455248+114347543738231
ENST00000579146PGAP3chr1737840849-ENST00000264605MLPHchr2238455248+246547543738231
ENST00000300658PGAP3chr1737840849-ENST00000410032MLPHchr2238455248+119352593788231
ENST00000300658PGAP3chr1737840849-ENST00000264605MLPHchr2238455248+251552593788231
ENST00000429199PGAP3chr1737840849-ENST00000410032MLPHchr2238455248+114347543738231
ENST00000429199PGAP3chr1737840849-ENST00000264605MLPHchr2238455248+246547543738231

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000579146ENST00000410032PGAP3chr1737840849-MLPHchr2238455248+0.06018370.93981636
ENST00000579146ENST00000264605PGAP3chr1737840849-MLPHchr2238455248+0.0260548570.97394514
ENST00000300658ENST00000410032PGAP3chr1737840849-MLPHchr2238455248+0.0520059130.94799405
ENST00000300658ENST00000264605PGAP3chr1737840849-MLPHchr2238455248+0.0277084820.97229147
ENST00000429199ENST00000410032PGAP3chr1737840849-MLPHchr2238455248+0.06018370.93981636
ENST00000429199ENST00000264605PGAP3chr1737840849-MLPHchr2238455248+0.0260548570.97394514

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Fusion Genomic Features for PGAP3-MLPH


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
PGAP3chr1737840849-MLPHchr2238455248+2.98E-070.99999964
PGAP3chr1737840849-MLPHchr2238455248+2.98E-070.99999964

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for PGAP3-MLPH


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:37840849/chr2:238455248)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.MLPH

Q9BV36

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Rab effector protein involved in melanosome transport. Serves as link between melanosome-bound RAB27A and the motor protein MYO5A. {ECO:0000269|PubMed:12062444}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38120_135144321.0Topological domainCytoplasmic
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-3821_98144321.0Topological domainLumenal
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-3899_119144321.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38157_169144321.0Topological domainLumenal
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38191_193144321.0Topological domainCytoplasmic
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38215_224144321.0Topological domainLumenal
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38246_257144321.0Topological domainCytoplasmic
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38279_279144321.0Topological domainLumenal
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38300_320144321.0Topological domainCytoplasmic
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17120_1350270.0Topological domainCytoplasmic
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17157_1690270.0Topological domainLumenal
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17191_1930270.0Topological domainCytoplasmic
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17215_2240270.0Topological domainLumenal
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-1721_980270.0Topological domainLumenal
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17246_2570270.0Topological domainCytoplasmic
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17279_2790270.0Topological domainLumenal
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17300_3200270.0Topological domainCytoplasmic
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38136_156144321.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38170_190144321.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38194_214144321.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38225_245144321.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38258_278144321.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000300658-38280_299144321.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17136_1560270.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17170_1900270.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17194_2140270.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17225_2450270.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17258_2780270.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-17280_2990270.0TransmembraneHelical
HgenePGAP3chr17:37840849chr2:238455248ENST00000378011-1799_1190270.0TransmembraneHelical
TgeneMLPHchr17:37840849chr2:238455248ENST000002646051116373_496513601.0Coiled coilOntology_term=ECO:0000255
TgeneMLPHchr17:37840849chr2:238455248ENST000003385301015373_496485573.0Coiled coilOntology_term=ECO:0000255
TgeneMLPHchr17:37840849chr2:238455248ENST00000409373813373_496393481.0Coiled coilOntology_term=ECO:0000255
TgeneMLPHchr17:37840849chr2:238455248ENST0000026460511164_124513601.0DomainRabBD
TgeneMLPHchr17:37840849chr2:238455248ENST0000033853010154_124485573.0DomainRabBD
TgeneMLPHchr17:37840849chr2:238455248ENST000004093738134_124393481.0DomainRabBD
TgeneMLPHchr17:37840849chr2:238455248ENST00000264605111664_107513601.0Zinc fingerNote=FYVE-type
TgeneMLPHchr17:37840849chr2:238455248ENST00000338530101564_107485573.0Zinc fingerNote=FYVE-type
TgeneMLPHchr17:37840849chr2:238455248ENST0000040937381364_107393481.0Zinc fingerNote=FYVE-type


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Fusion Gene Sequence for PGAP3-MLPH


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>64555_64555_1_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000300658_MLPH_chr2_238455248_ENST00000264605_length(transcript)=2515nt_BP=525nt
GTAGAATAAAGAACACAGGAACTTCCGGTTACTCCGGAAGTGGAAGCTTCATACTCCTAAGCTCCTCCCCCGGCGGCGAGCCAGGGAGAA
AGGATGGCCGGCCTGGCGGCGCGGTTGGTCCTGCTAGCTGGGGCAGCGGCGCTGGCGAGCGGCTCCCAGGGCGACCGTGAGCCGGTGTAC
CGCGACTGCGTACTGCAGTGCGAAGAGCAGAACTGCTCTGGGGGCGCTCTGAATCACTTCCGCTCCCGCCAGCCAATCTACATGAGTCTA
GCAGGCTGGACCTGTCGGGACGACTGTAAGTATGAGTGTATGTGGGTCACCGTTGGGCTCTACCTCCAGGAAGGTCACAAAGTGCCTCAG
TTCCATGGCAAGTGGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGCATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTG
GTGATGCTCTGCCGCTACCGCACCTTCGTGCCAGCCTCCTCCCCCATGTACCACACCTGTGTGGCCTTCGCCTGGATATTTCTCCCTCGA
GTGGCTGGGAAACTTGGCAAGAGACCAGAGGACCCAAATGCAGACCCTTCAAGTGAGGCCAAGGCAATGGCTGTGCCCTATCTTCTGAGA
AGAAAGTTCAGTAATTCCCTGAAAAGTCAAGGTAAAGATGATGATTCTTTTGATCGGAAATCAGTGTACCGAGGCTCGCTGACACAGAGA
AACCCCAACGCGAGGAAAGGAATGGCCAGCCACACCTTCGCGAAACCTGTGGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAG
AGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTGGCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGA
GAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAGCGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATG
ACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCTGCTGTGACTTCCCTTTAGGACAATGTTGTGTAAATCTTTG
AAGGACACACCGAAGACCTTTATACTGTGATCTTTTACCCCTTTCACTCTTGGCTTTCTTATGTTGCTTTCATGAATGGAATGGAAAAAA
GATGACTCAGTTAAGGCACCAGCCATATGTGTATTCTTGATGGTCTATATCGGGGTGTGAGCAGATGTTTGCGTATTTCTTGTGGGTGTG
ACTGGATATTAGACATCCGGACAAGTGACTGAACTAATGATCTGCTGAATAATGAAGGAGGAATAGACACCCCAGTCCCCACCCTACGTG
CACCCGCTCTGCAAGTTCCCATGTGATCTGTAGACCAGGGGAAATTACACTGCGGTCAAGGGCAGAGCCTGCACATGACAGCAAGTGAGC
ATTTGATAGATGCTCAGATGCTAGTGCAGAGAGCCTGCTGGGAGACGAAGAGACAGCAGGCAGAGCTCCAGATGGGCAAGGAAGAGGCTT
GGTTCTAGCCTGGCTCTGCCCCTCACTGCAGTGGATCCAGTGGGGCAGAGGACAGAGGGTCACAACCAATGAGGGATGTCTGCCAAGGAT
GGGGGTGCAGAGGCCACAGGAGTCAGCTTGCCACTCGCCCATTGGTTACATAGATGATCTCTCAGACAGGCTGGGACTCAGAGTTATTTC
CTAGTATCGGTGTGCCCCATCCAGTTTTAAGTGGAGCCCTCCAAGACTCTCCAGAGCTGCCTTTGAACATCCTAACAGTAATCACATCTC
ACCCTCCCTGAGGTTCACTTTAGACAGGACCCAATGGCTGCACTGCCTTTGTCAGAGGGGGTGCTGAGAGGAGTGGCTTCTTTTAGAATC
AAACAGTAGAGACAAGAGTCAAGCCTTGTGTCTTCAAGCATTGACCAAGTTAAGTGTTTCCTTCCCTCTCTCAATAAGACACTTCCAGGA
GCTTTCCAATCTCTCACTTAAAACTAAGGTTTGAATCTCAAAGTGTTGCTGGGAGGCTGATACTCCTGCAACTTCAGGAGACCTGTGAGC
ACACATTAGCAGCTGTTTCTCTGACTCCTTGTGGCATCAGATAAAAACGTGGGAGTTTTTCCATATAATTCCCAGCCTTACTTATAAATT
CTATTCTTTGAAAAAATTATTCAGGCTAGGTAAGGTGGCTCATACCTATAATCCCAGCCCTTTGAGAGGCCAAGGTGGGAGAATTGCTTG
AGGCCAGGAGTTTGAGACCTCCTGGGCAACATAGTGAGATCCCATCTCTACAAAAAACAAAACAAAAAAATTACCCAAGCATGATGGTAT
ATGCCTGTAGTCGTACCTACTTACTTAGGAGGCTGAGGCAGGAGGATCACTTGAGCCCTGGAGGTTGGGGCTGCAGTGAGCCATGATCGC

>64555_64555_1_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000300658_MLPH_chr2_238455248_ENST00000264605_length(amino acids)=231AA_BP=144
MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQF
HGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWIFLPRVAGKLGKRPEDPNADPSSEAKAMAVPYLLRR

--------------------------------------------------------------
>64555_64555_2_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000300658_MLPH_chr2_238455248_ENST00000410032_length(transcript)=1193nt_BP=525nt
GTAGAATAAAGAACACAGGAACTTCCGGTTACTCCGGAAGTGGAAGCTTCATACTCCTAAGCTCCTCCCCCGGCGGCGAGCCAGGGAGAA
AGGATGGCCGGCCTGGCGGCGCGGTTGGTCCTGCTAGCTGGGGCAGCGGCGCTGGCGAGCGGCTCCCAGGGCGACCGTGAGCCGGTGTAC
CGCGACTGCGTACTGCAGTGCGAAGAGCAGAACTGCTCTGGGGGCGCTCTGAATCACTTCCGCTCCCGCCAGCCAATCTACATGAGTCTA
GCAGGCTGGACCTGTCGGGACGACTGTAAGTATGAGTGTATGTGGGTCACCGTTGGGCTCTACCTCCAGGAAGGTCACAAAGTGCCTCAG
TTCCATGGCAAGTGGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGCATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTG
GTGATGCTCTGCCGCTACCGCACCTTCGTGCCAGCCTCCTCCCCCATGTACCACACCTGTGTGGCCTTCGCCTGGATATTTCTCCCTCGA
GTGGCTGGGAAACTTGGCAAGAGACCAGAGGACCCAAATGCAGACCCTTCAAGTGAGGCCAAGGCAATGGCTGTGCCCTATCTTCTGAGA
AGAAAGTTCAGTAATTCCCTGAAAAGTCAAGGTAAAGATGATGATTCTTTTGATCGGAAATCAGTGTACCGAGGCTCGCTGACACAGAGA
AACCCCAACGCGAGGAAAGGAATGGCCAGCCACACCTTCGCGAAACCTGTGGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAG
AGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTGGCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGA
GAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAGCGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATG
ACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCTGCTGTGACTTCCCTTTAGGACAATGTTGTGTAAATCTTTG
AAGGACACACCGAAGACCTTTATACTGTGATCTTTTACCCCTTTCACTCTTGGCTTTCTTATGTTGCTTTCATGAATGGAATGGAAAAAA

>64555_64555_2_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000300658_MLPH_chr2_238455248_ENST00000410032_length(amino acids)=231AA_BP=144
MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQF
HGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWIFLPRVAGKLGKRPEDPNADPSSEAKAMAVPYLLRR

--------------------------------------------------------------
>64555_64555_3_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000429199_MLPH_chr2_238455248_ENST00000264605_length(transcript)=2465nt_BP=475nt
ATACTCCTAAGCTCCTCCCCCGGCGGCGAGCCAGGGAGAAAGGATGGCCGGCCTGGCGGCGCGGTTGGTCCTGCTAGCTGGGGCAGCGGC
GCTGGCGAGCGGCTCCCAGGGCGACCGTGAGCCGGTGTACCGCGACTGCGTACTGCAGTGCGAAGAGCAGAACTGCTCTGGGGGCGCTCT
GAATCACTTCCGCTCCCGCCAGCCAATCTACATGAGTCTAGCAGGCTGGACCTGTCGGGACGACTGTAAGTATGAGTGTATGTGGGTCAC
CGTTGGGCTCTACCTCCAGGAAGGTCACAAAGTGCCTCAGTTCCATGGCAAGTGGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGC
ATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTGGTGATGCTCTGCCGCTACCGCACCTTCGTGCCAGCCTCCTCCCCCATGTA
CCACACCTGTGTGGCCTTCGCCTGGATATTTCTCCCTCGAGTGGCTGGGAAACTTGGCAAGAGACCAGAGGACCCAAATGCAGACCCTTC
AAGTGAGGCCAAGGCAATGGCTGTGCCCTATCTTCTGAGAAGAAAGTTCAGTAATTCCCTGAAAAGTCAAGGTAAAGATGATGATTCTTT
TGATCGGAAATCAGTGTACCGAGGCTCGCTGACACAGAGAAACCCCAACGCGAGGAAAGGAATGGCCAGCCACACCTTCGCGAAACCTGT
GGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAGAGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTG
GCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAG
CGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATGACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCT
GCTGTGACTTCCCTTTAGGACAATGTTGTGTAAATCTTTGAAGGACACACCGAAGACCTTTATACTGTGATCTTTTACCCCTTTCACTCT
TGGCTTTCTTATGTTGCTTTCATGAATGGAATGGAAAAAAGATGACTCAGTTAAGGCACCAGCCATATGTGTATTCTTGATGGTCTATAT
CGGGGTGTGAGCAGATGTTTGCGTATTTCTTGTGGGTGTGACTGGATATTAGACATCCGGACAAGTGACTGAACTAATGATCTGCTGAAT
AATGAAGGAGGAATAGACACCCCAGTCCCCACCCTACGTGCACCCGCTCTGCAAGTTCCCATGTGATCTGTAGACCAGGGGAAATTACAC
TGCGGTCAAGGGCAGAGCCTGCACATGACAGCAAGTGAGCATTTGATAGATGCTCAGATGCTAGTGCAGAGAGCCTGCTGGGAGACGAAG
AGACAGCAGGCAGAGCTCCAGATGGGCAAGGAAGAGGCTTGGTTCTAGCCTGGCTCTGCCCCTCACTGCAGTGGATCCAGTGGGGCAGAG
GACAGAGGGTCACAACCAATGAGGGATGTCTGCCAAGGATGGGGGTGCAGAGGCCACAGGAGTCAGCTTGCCACTCGCCCATTGGTTACA
TAGATGATCTCTCAGACAGGCTGGGACTCAGAGTTATTTCCTAGTATCGGTGTGCCCCATCCAGTTTTAAGTGGAGCCCTCCAAGACTCT
CCAGAGCTGCCTTTGAACATCCTAACAGTAATCACATCTCACCCTCCCTGAGGTTCACTTTAGACAGGACCCAATGGCTGCACTGCCTTT
GTCAGAGGGGGTGCTGAGAGGAGTGGCTTCTTTTAGAATCAAACAGTAGAGACAAGAGTCAAGCCTTGTGTCTTCAAGCATTGACCAAGT
TAAGTGTTTCCTTCCCTCTCTCAATAAGACACTTCCAGGAGCTTTCCAATCTCTCACTTAAAACTAAGGTTTGAATCTCAAAGTGTTGCT
GGGAGGCTGATACTCCTGCAACTTCAGGAGACCTGTGAGCACACATTAGCAGCTGTTTCTCTGACTCCTTGTGGCATCAGATAAAAACGT
GGGAGTTTTTCCATATAATTCCCAGCCTTACTTATAAATTCTATTCTTTGAAAAAATTATTCAGGCTAGGTAAGGTGGCTCATACCTATA
ATCCCAGCCCTTTGAGAGGCCAAGGTGGGAGAATTGCTTGAGGCCAGGAGTTTGAGACCTCCTGGGCAACATAGTGAGATCCCATCTCTA
CAAAAAACAAAACAAAAAAATTACCCAAGCATGATGGTATATGCCTGTAGTCGTACCTACTTACTTAGGAGGCTGAGGCAGGAGGATCAC
TTGAGCCCTGGAGGTTGGGGCTGCAGTGAGCCATGATCGCATCACTATACTCGAGCCTGGGCAACAGAGTGAGACCTTGTCTCTTAAAAA

>64555_64555_3_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000429199_MLPH_chr2_238455248_ENST00000264605_length(amino acids)=231AA_BP=144
MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQF
HGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWIFLPRVAGKLGKRPEDPNADPSSEAKAMAVPYLLRR

--------------------------------------------------------------
>64555_64555_4_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000429199_MLPH_chr2_238455248_ENST00000410032_length(transcript)=1143nt_BP=475nt
ATACTCCTAAGCTCCTCCCCCGGCGGCGAGCCAGGGAGAAAGGATGGCCGGCCTGGCGGCGCGGTTGGTCCTGCTAGCTGGGGCAGCGGC
GCTGGCGAGCGGCTCCCAGGGCGACCGTGAGCCGGTGTACCGCGACTGCGTACTGCAGTGCGAAGAGCAGAACTGCTCTGGGGGCGCTCT
GAATCACTTCCGCTCCCGCCAGCCAATCTACATGAGTCTAGCAGGCTGGACCTGTCGGGACGACTGTAAGTATGAGTGTATGTGGGTCAC
CGTTGGGCTCTACCTCCAGGAAGGTCACAAAGTGCCTCAGTTCCATGGCAAGTGGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGC
ATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTGGTGATGCTCTGCCGCTACCGCACCTTCGTGCCAGCCTCCTCCCCCATGTA
CCACACCTGTGTGGCCTTCGCCTGGATATTTCTCCCTCGAGTGGCTGGGAAACTTGGCAAGAGACCAGAGGACCCAAATGCAGACCCTTC
AAGTGAGGCCAAGGCAATGGCTGTGCCCTATCTTCTGAGAAGAAAGTTCAGTAATTCCCTGAAAAGTCAAGGTAAAGATGATGATTCTTT
TGATCGGAAATCAGTGTACCGAGGCTCGCTGACACAGAGAAACCCCAACGCGAGGAAAGGAATGGCCAGCCACACCTTCGCGAAACCTGT
GGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAGAGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTG
GCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAG
CGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATGACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCT
GCTGTGACTTCCCTTTAGGACAATGTTGTGTAAATCTTTGAAGGACACACCGAAGACCTTTATACTGTGATCTTTTACCCCTTTCACTCT

>64555_64555_4_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000429199_MLPH_chr2_238455248_ENST00000410032_length(amino acids)=231AA_BP=144
MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQF
HGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWIFLPRVAGKLGKRPEDPNADPSSEAKAMAVPYLLRR

--------------------------------------------------------------
>64555_64555_5_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000579146_MLPH_chr2_238455248_ENST00000264605_length(transcript)=2465nt_BP=475nt
ATACTCCTAAGCTCCTCCCCCGGCGGCGAGCCAGGGAGAAAGGATGGCCGGCCTGGCGGCGCGGTTGGTCCTGCTAGCTGGGGCAGCGGC
GCTGGCGAGCGGCTCCCAGGGCGACCGTGAGCCGGTGTACCGCGACTGCGTACTGCAGTGCGAAGAGCAGAACTGCTCTGGGGGCGCTCT
GAATCACTTCCGCTCCCGCCAGCCAATCTACATGAGTCTAGCAGGCTGGACCTGTCGGGACGACTGTAAGTATGAGTGTATGTGGGTCAC
CGTTGGGCTCTACCTCCAGGAAGGTCACAAAGTGCCTCAGTTCCATGGCAAGTGGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGC
ATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTGGTGATGCTCTGCCGCTACCGCACCTTCGTGCCAGCCTCCTCCCCCATGTA
CCACACCTGTGTGGCCTTCGCCTGGATATTTCTCCCTCGAGTGGCTGGGAAACTTGGCAAGAGACCAGAGGACCCAAATGCAGACCCTTC
AAGTGAGGCCAAGGCAATGGCTGTGCCCTATCTTCTGAGAAGAAAGTTCAGTAATTCCCTGAAAAGTCAAGGTAAAGATGATGATTCTTT
TGATCGGAAATCAGTGTACCGAGGCTCGCTGACACAGAGAAACCCCAACGCGAGGAAAGGAATGGCCAGCCACACCTTCGCGAAACCTGT
GGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAGAGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTG
GCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAG
CGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATGACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCT
GCTGTGACTTCCCTTTAGGACAATGTTGTGTAAATCTTTGAAGGACACACCGAAGACCTTTATACTGTGATCTTTTACCCCTTTCACTCT
TGGCTTTCTTATGTTGCTTTCATGAATGGAATGGAAAAAAGATGACTCAGTTAAGGCACCAGCCATATGTGTATTCTTGATGGTCTATAT
CGGGGTGTGAGCAGATGTTTGCGTATTTCTTGTGGGTGTGACTGGATATTAGACATCCGGACAAGTGACTGAACTAATGATCTGCTGAAT
AATGAAGGAGGAATAGACACCCCAGTCCCCACCCTACGTGCACCCGCTCTGCAAGTTCCCATGTGATCTGTAGACCAGGGGAAATTACAC
TGCGGTCAAGGGCAGAGCCTGCACATGACAGCAAGTGAGCATTTGATAGATGCTCAGATGCTAGTGCAGAGAGCCTGCTGGGAGACGAAG
AGACAGCAGGCAGAGCTCCAGATGGGCAAGGAAGAGGCTTGGTTCTAGCCTGGCTCTGCCCCTCACTGCAGTGGATCCAGTGGGGCAGAG
GACAGAGGGTCACAACCAATGAGGGATGTCTGCCAAGGATGGGGGTGCAGAGGCCACAGGAGTCAGCTTGCCACTCGCCCATTGGTTACA
TAGATGATCTCTCAGACAGGCTGGGACTCAGAGTTATTTCCTAGTATCGGTGTGCCCCATCCAGTTTTAAGTGGAGCCCTCCAAGACTCT
CCAGAGCTGCCTTTGAACATCCTAACAGTAATCACATCTCACCCTCCCTGAGGTTCACTTTAGACAGGACCCAATGGCTGCACTGCCTTT
GTCAGAGGGGGTGCTGAGAGGAGTGGCTTCTTTTAGAATCAAACAGTAGAGACAAGAGTCAAGCCTTGTGTCTTCAAGCATTGACCAAGT
TAAGTGTTTCCTTCCCTCTCTCAATAAGACACTTCCAGGAGCTTTCCAATCTCTCACTTAAAACTAAGGTTTGAATCTCAAAGTGTTGCT
GGGAGGCTGATACTCCTGCAACTTCAGGAGACCTGTGAGCACACATTAGCAGCTGTTTCTCTGACTCCTTGTGGCATCAGATAAAAACGT
GGGAGTTTTTCCATATAATTCCCAGCCTTACTTATAAATTCTATTCTTTGAAAAAATTATTCAGGCTAGGTAAGGTGGCTCATACCTATA
ATCCCAGCCCTTTGAGAGGCCAAGGTGGGAGAATTGCTTGAGGCCAGGAGTTTGAGACCTCCTGGGCAACATAGTGAGATCCCATCTCTA
CAAAAAACAAAACAAAAAAATTACCCAAGCATGATGGTATATGCCTGTAGTCGTACCTACTTACTTAGGAGGCTGAGGCAGGAGGATCAC
TTGAGCCCTGGAGGTTGGGGCTGCAGTGAGCCATGATCGCATCACTATACTCGAGCCTGGGCAACAGAGTGAGACCTTGTCTCTTAAAAA

>64555_64555_5_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000579146_MLPH_chr2_238455248_ENST00000264605_length(amino acids)=231AA_BP=144
MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQF
HGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWIFLPRVAGKLGKRPEDPNADPSSEAKAMAVPYLLRR

--------------------------------------------------------------
>64555_64555_6_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000579146_MLPH_chr2_238455248_ENST00000410032_length(transcript)=1143nt_BP=475nt
ATACTCCTAAGCTCCTCCCCCGGCGGCGAGCCAGGGAGAAAGGATGGCCGGCCTGGCGGCGCGGTTGGTCCTGCTAGCTGGGGCAGCGGC
GCTGGCGAGCGGCTCCCAGGGCGACCGTGAGCCGGTGTACCGCGACTGCGTACTGCAGTGCGAAGAGCAGAACTGCTCTGGGGGCGCTCT
GAATCACTTCCGCTCCCGCCAGCCAATCTACATGAGTCTAGCAGGCTGGACCTGTCGGGACGACTGTAAGTATGAGTGTATGTGGGTCAC
CGTTGGGCTCTACCTCCAGGAAGGTCACAAAGTGCCTCAGTTCCATGGCAAGTGGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGC
ATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTGGTGATGCTCTGCCGCTACCGCACCTTCGTGCCAGCCTCCTCCCCCATGTA
CCACACCTGTGTGGCCTTCGCCTGGATATTTCTCCCTCGAGTGGCTGGGAAACTTGGCAAGAGACCAGAGGACCCAAATGCAGACCCTTC
AAGTGAGGCCAAGGCAATGGCTGTGCCCTATCTTCTGAGAAGAAAGTTCAGTAATTCCCTGAAAAGTCAAGGTAAAGATGATGATTCTTT
TGATCGGAAATCAGTGTACCGAGGCTCGCTGACACAGAGAAACCCCAACGCGAGGAAAGGAATGGCCAGCCACACCTTCGCGAAACCTGT
GGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAGAGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTG
GCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAG
CGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATGACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCT
GCTGTGACTTCCCTTTAGGACAATGTTGTGTAAATCTTTGAAGGACACACCGAAGACCTTTATACTGTGATCTTTTACCCCTTTCACTCT

>64555_64555_6_PGAP3-MLPH_PGAP3_chr17_37840849_ENST00000579146_MLPH_chr2_238455248_ENST00000410032_length(amino acids)=231AA_BP=144
MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQF
HGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWIFLPRVAGKLGKRPEDPNADPSSEAKAMAVPYLLRR

--------------------------------------------------------------

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Fusion Gene PPI Analysis for PGAP3-MLPH


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for PGAP3-MLPH


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for PGAP3-MLPH


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource