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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:PIAS2-IER3IP1 (FusionGDB2 ID:65112)

Fusion Gene Summary for PIAS2-IER3IP1

check button Fusion gene summary
Fusion gene informationFusion gene name: PIAS2-IER3IP1
Fusion gene ID: 65112
HgeneTgene
Gene symbol

PIAS2

IER3IP1

Gene ID

9063

51124

Gene nameprotein inhibitor of activated STAT 2immediate early response 3 interacting protein 1
SynonymsARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4HSPC039|MEDS|PRO2309
Cytomap

18q21.1

18q21.1

Type of geneprotein-codingprotein-coding
DescriptionE3 SUMO-protein ligase PIAS2DAB2-interacting proteinE3 SUMO-protein transferase PIAS2androgen receptor-interacting protein 3msx-interacting zinc finger proteinprotein inhibitor of activated STAT Xzinc finger, MIZ-type containing 4immediate early response 3-interacting protein 1
Modification date2020032020200313
UniProtAcc.

Q9Y5U9

Ensembl transtripts involved in fusion geneENST00000324794, ENST00000585916, 
ENST00000545673, ENST00000590944, 
ENST00000588705, ENST00000256433, 
Fusion gene scores* DoF score10 X 13 X 6=7805 X 3 X 3=45
# samples 155
** MAII scorelog2(15/780*10)=-2.37851162325373
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/45*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: PIAS2 [Title/Abstract] AND IER3IP1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPIAS2(44470543)-IER3IP1(44683908), # samples:1
Anticipated loss of major functional domain due to fusion event.PIAS2-IER3IP1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
PIAS2-IER3IP1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePIAS2

GO:0016925

protein sumoylation

22406621

HgenePIAS2

GO:0060766

negative regulation of androgen receptor signaling pathway

11477070


check buttonFusion gene breakpoints across PIAS2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across IER3IP1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-BH-A18L-01APIAS2chr18

44470543

-IER3IP1chr18

44683908

-


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Fusion Gene ORF analysis for PIAS2-IER3IP1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000324794ENST00000588705PIAS2chr18

44470543

-IER3IP1chr18

44683908

-
Frame-shiftENST00000585916ENST00000588705PIAS2chr18

44470543

-IER3IP1chr18

44683908

-
In-frameENST00000324794ENST00000256433PIAS2chr18

44470543

-IER3IP1chr18

44683908

-
In-frameENST00000585916ENST00000256433PIAS2chr18

44470543

-IER3IP1chr18

44683908

-
intron-3CDSENST00000545673ENST00000256433PIAS2chr18

44470543

-IER3IP1chr18

44683908

-
intron-3CDSENST00000545673ENST00000588705PIAS2chr18

44470543

-IER3IP1chr18

44683908

-
intron-3CDSENST00000590944ENST00000256433PIAS2chr18

44470543

-IER3IP1chr18

44683908

-
intron-3CDSENST00000590944ENST00000588705PIAS2chr18

44470543

-IER3IP1chr18

44683908

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000585916PIAS2chr1844470543-ENST00000256433IER3IP1chr1844683908-17924990656218
ENST00000324794PIAS2chr1844470543-ENST00000256433IER3IP1chr1844683908-1950657158814218

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000585916ENST00000256433PIAS2chr1844470543-IER3IP1chr1844683908-0.0027717140.9972283
ENST00000324794ENST00000256433PIAS2chr1844470543-IER3IP1chr1844683908-0.0032281570.9967719

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Fusion Genomic Features for PIAS2-IER3IP1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for PIAS2-IER3IP1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr18:44470543/chr18:44683908)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.IER3IP1

Q9Y5U9

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Regulator of endoplasmic reticulum secretion that acts as a key determinant of brain size (PubMed:33122427). Required for secretion of extracellular matrix proteins (PubMed:33122427). Required for correct brain development by depositing sufficient extracellular matrix proteins for tissue integrity and the proliferation of neural progenitors (PubMed:33122427). Acts as a regulator of the unfolded protein response (UPR) (By similarity). {ECO:0000250|UniProtKB:Q9CR20, ECO:0000269|PubMed:33122427}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePIAS2chr18:44470543chr18:44683908ENST00000324794-21311_45166573.0DomainSAP
HgenePIAS2chr18:44470543chr18:44683908ENST00000585916-21411_45166622.0DomainSAP
HgenePIAS2chr18:44470543chr18:44683908ENST00000324794-21319_23166573.0MotifNote=LXXLL motif
HgenePIAS2chr18:44470543chr18:44683908ENST00000585916-21419_23166622.0MotifNote=LXXLL motif
TgeneIER3IP1chr18:44470543chr18:44683908ENST000002564330362_823083.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePIAS2chr18:44470543chr18:44683908ENST00000324794-213571_612166573.0Compositional biasNote=Ser-rich
HgenePIAS2chr18:44470543chr18:44683908ENST00000324794-213596_602166573.0Compositional biasNote=Poly-Ser
HgenePIAS2chr18:44470543chr18:44683908ENST00000585916-214571_612166622.0Compositional biasNote=Ser-rich
HgenePIAS2chr18:44470543chr18:44683908ENST00000585916-214596_602166622.0Compositional biasNote=Poly-Ser
HgenePIAS2chr18:44470543chr18:44683908ENST00000324794-213134_299166573.0DomainPINIT
HgenePIAS2chr18:44470543chr18:44683908ENST00000585916-214134_299166622.0DomainPINIT
HgenePIAS2chr18:44470543chr18:44683908ENST00000324794-213484_492166573.0MotifNuclear localization signal
HgenePIAS2chr18:44470543chr18:44683908ENST00000585916-214484_492166622.0MotifNuclear localization signal
HgenePIAS2chr18:44470543chr18:44683908ENST00000324794-213467_473166573.0RegionNote=SUMO1-binding
HgenePIAS2chr18:44470543chr18:44683908ENST00000585916-214467_473166622.0RegionNote=SUMO1-binding
HgenePIAS2chr18:44470543chr18:44683908ENST00000324794-213331_408166573.0Zinc fingerSP-RING-type
HgenePIAS2chr18:44470543chr18:44683908ENST00000585916-214331_408166622.0Zinc fingerSP-RING-type
TgeneIER3IP1chr18:44470543chr18:44683908ENST00000256433032_223083.0TransmembraneHelical


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Fusion Gene Sequence for PIAS2-IER3IP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>65112_65112_1_PIAS2-IER3IP1_PIAS2_chr18_44470543_ENST00000324794_IER3IP1_chr18_44683908_ENST00000256433_length(transcript)=1950nt_BP=657nt
GACGGGCCCGGCTGTAGCGGCGGCGGCCGCGGCGTCTTAAGCGGCGCCCAGTGCAGGATGGTGCTGGAGGCGGCGGCGGCCGTGGTGGCG
GCAGCGTCGTTGGCGGCAGCGGGAGTGGGTGCGGCGGCAGCGGCGGCGGCGCCCGCGGGTGGTATAAAATGGCGGATTTCGAAGAGTTGA
GGAATATGGTTTCTAGTTTTAGGGTTTCTGAACTACAAGTATTACTAGGCTTTGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCC
TGATGAGGGCGCTGCATTTATTGAAGAGCGGCTGCAGCCCTGCGGTTCAGATTAAAATCCGAGAATTGTATAGACGCCGATATCCACGAA
CTCTTGAAGGACTTTCTGATTTATCCACAATCAAATCATCGGTTTTCAGTTTGGATGGTGGCTCATCACCTGTAGAACCTGACTTGGCCG
TGGCTGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCATCCTCTCCTGTTGGTTCTGTGCTGCTTCAAGATACTAAGC
CCACATTTGAGATGCAGCAGCCATCTCCCCCAATTCCTCCTGTCCATCCTGATGTGCAGTTAAAAAATCTGCCCTTTTATGATGTCCTTG
ATGTTCTCATCAAGCCCACGAGTTTAGTTGGCTGGGGAACAGACCAGGGAATTGGTGGATTTGGAGAAGAGCCGGGAATTAAATCACAGC
TAATGAACCTTATTCGATCTGTAAGAACCGTGATGAGAGTGCCATTGATAATAGTAAACTCAATTGCAATTGTGTTACTTTTATTATTTG
GATGAATATCAGTGGAGAAAATGGAGACTCAGAAGAGGACATGCCAGTAGAAGTTATTACTTTGGTCATTATTGGAATATTTATATCTTA
GCTGGCTGACCTTGCACTTGTCAAAAATGTAAAGCTGAAAATAAAACCAGGGTTTCTATTTATCTGTTTTTTTTTTTAATGTTGCACTTG
TAGTTTCATTACAAAAGATCAGATCATGAAAGGCAGTAACTCTCCAGGACTGGAATATCTGATTGCTCAGTGTTAATAGTAGTTCATGCT
GTGGTGAGATTGTTAAAAGGGTGCAAGACTGTTGCTTCTCTTTTTTTAGATATTTTTCTATCTCTCACTTCTCAGGGATGAAATTCTTTT
TCAAAGTTTTGAAGTTCCTTGCAACTTAGCCATGATGTGAGTGGTTATCCCTAGATAAAATTAAAAGGATTTTTAAAAAGTAATTACTGC
ACATAAAATGATAAATAGGTAATTTGAATAATTTTATTTTAAGCTCCTTGGTTAATTATTTTGTCTATTGTCTCAGCTATAAATTCAAAT
TTATACATACTATTGAGTATTAATATTCTCTGATTTCAGGGAGAATTCTGTCAGTCACATGATGATTATGTTTTTGTTTAACATTCTTTC
CATGCACTTGTTATTTTATTAATTTGCCTGAATGATGAGACCAGACCAGTGTCTACAGATTTTCATTGTCAGAAAAATCTATAAGTCTGC
CCTTTTTACAATGATGATTTAAAAAAAACAACAGCGTAAATATTAGCCCACAAGAGCAGTCCTAAACAATCACAATTACACTGTACTACC
CAAGAAGACTGTTTATTGTGAAGCATTTACCTTTCAAAAAATCATTACATTTCTATTTCTTGGTGGAGCAGCACATTGTGGAGTGTGATT
CTTAATTCTTCATTGAGTTTGTCAATAGGACATTGATGCTGGATAGGTTGTCTTTTGTTTTTATGTCTCAGACCATCTTGTGAGATTGTT
TGCCTATCTCATAATACAGTTTTATGCAGAAAGGTTGAAACTATGTAAATGGTTTTTATGGAAATTATCAGTTACAATATTTTAAAGGTG

>65112_65112_1_PIAS2-IER3IP1_PIAS2_chr18_44470543_ENST00000324794_IER3IP1_chr18_44683908_ENST00000256433_length(amino acids)=218AA_BP=166
MADFEELRNMVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTLEGLSDLSTIKSSVFSLDGGSS
PVEPDLAVAGIHSLPSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVGWGTDQGIGGFGE

--------------------------------------------------------------
>65112_65112_2_PIAS2-IER3IP1_PIAS2_chr18_44470543_ENST00000585916_IER3IP1_chr18_44683908_ENST00000256433_length(transcript)=1792nt_BP=499nt
ATGGCGGATTTCGAAGAGTTGAGGAATATGGTTTCTAGTTTTAGGGTTTCTGAACTACAAGTATTACTAGGCTTTGCTGGACGGAATAAA
AGTGGACGCAAGCATGACCTCCTGATGAGGGCGCTGCATTTATTGAAGAGCGGCTGCAGCCCTGCGGTTCAGATTAAAATCCGAGAATTG
TATAGACGCCGATATCCACGAACTCTTGAAGGACTTTCTGATTTATCCACAATCAAATCATCGGTTTTCAGTTTGGATGGTGGCTCATCA
CCTGTAGAACCTGACTTGGCCGTGGCTGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCATCCTCTCCTGTTGGTTCT
GTGCTGCTTCAAGATACTAAGCCCACATTTGAGATGCAGCAGCCATCTCCCCCAATTCCTCCTGTCCATCCTGATGTGCAGTTAAAAAAT
CTGCCCTTTTATGATGTCCTTGATGTTCTCATCAAGCCCACGAGTTTAGTTGGCTGGGGAACAGACCAGGGAATTGGTGGATTTGGAGAA
GAGCCGGGAATTAAATCACAGCTAATGAACCTTATTCGATCTGTAAGAACCGTGATGAGAGTGCCATTGATAATAGTAAACTCAATTGCA
ATTGTGTTACTTTTATTATTTGGATGAATATCAGTGGAGAAAATGGAGACTCAGAAGAGGACATGCCAGTAGAAGTTATTACTTTGGTCA
TTATTGGAATATTTATATCTTAGCTGGCTGACCTTGCACTTGTCAAAAATGTAAAGCTGAAAATAAAACCAGGGTTTCTATTTATCTGTT
TTTTTTTTTAATGTTGCACTTGTAGTTTCATTACAAAAGATCAGATCATGAAAGGCAGTAACTCTCCAGGACTGGAATATCTGATTGCTC
AGTGTTAATAGTAGTTCATGCTGTGGTGAGATTGTTAAAAGGGTGCAAGACTGTTGCTTCTCTTTTTTTAGATATTTTTCTATCTCTCAC
TTCTCAGGGATGAAATTCTTTTTCAAAGTTTTGAAGTTCCTTGCAACTTAGCCATGATGTGAGTGGTTATCCCTAGATAAAATTAAAAGG
ATTTTTAAAAAGTAATTACTGCACATAAAATGATAAATAGGTAATTTGAATAATTTTATTTTAAGCTCCTTGGTTAATTATTTTGTCTAT
TGTCTCAGCTATAAATTCAAATTTATACATACTATTGAGTATTAATATTCTCTGATTTCAGGGAGAATTCTGTCAGTCACATGATGATTA
TGTTTTTGTTTAACATTCTTTCCATGCACTTGTTATTTTATTAATTTGCCTGAATGATGAGACCAGACCAGTGTCTACAGATTTTCATTG
TCAGAAAAATCTATAAGTCTGCCCTTTTTACAATGATGATTTAAAAAAAACAACAGCGTAAATATTAGCCCACAAGAGCAGTCCTAAACA
ATCACAATTACACTGTACTACCCAAGAAGACTGTTTATTGTGAAGCATTTACCTTTCAAAAAATCATTACATTTCTATTTCTTGGTGGAG
CAGCACATTGTGGAGTGTGATTCTTAATTCTTCATTGAGTTTGTCAATAGGACATTGATGCTGGATAGGTTGTCTTTTGTTTTTATGTCT
CAGACCATCTTGTGAGATTGTTTGCCTATCTCATAATACAGTTTTATGCAGAAAGGTTGAAACTATGTAAATGGTTTTTATGGAAATTAT

>65112_65112_2_PIAS2-IER3IP1_PIAS2_chr18_44470543_ENST00000585916_IER3IP1_chr18_44683908_ENST00000256433_length(amino acids)=218AA_BP=166
MADFEELRNMVSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTLEGLSDLSTIKSSVFSLDGGSS
PVEPDLAVAGIHSLPSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLDVLIKPTSLVGWGTDQGIGGFGE

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Fusion Gene PPI Analysis for PIAS2-IER3IP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for PIAS2-IER3IP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for PIAS2-IER3IP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource