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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:PLXNC1-APPL2 (FusionGDB2 ID:66582)

Fusion Gene Summary for PLXNC1-APPL2

check button Fusion gene summary
Fusion gene informationFusion gene name: PLXNC1-APPL2
Fusion gene ID: 66582
HgeneTgene
Gene symbol

PLXNC1

APPL2

Gene ID

10154

55198

Gene nameplexin C1adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2
SynonymsCD232|PLXN-C1|VESPRDIP13B
Cytomap

12q22

12q23.3

Type of geneprotein-codingprotein-coding
Descriptionplexin-C1plexin (semaphorin receptor)receptor for viral semaphorin proteinreceptor for virally-encoded semaphorinvirus-encoded semaphorin protein receptorDCC-interacting protein 13-betaDIP13 betaadapter protein containing PH domain, PTB domain and leucine zipper motif 2adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
Modification date2020031320200313
UniProtAcc.

Q8NEU8

Ensembl transtripts involved in fusion geneENST00000258526, ENST00000547057, 
ENST00000545312, ENST00000551495, 
ENST00000539978, ENST00000546731, 
ENST00000549573, ENST00000551662, 
ENST00000258530, 
Fusion gene scores* DoF score7 X 6 X 5=2108 X 6 X 5=240
# samples 109
** MAII scorelog2(10/210*10)=-1.0703893278914
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/240*10)=-1.41503749927884
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PLXNC1 [Title/Abstract] AND APPL2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPLXNC1(94659001)-APPL2(105623001), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneAPPL2

GO:0006606

protein import into nucleus

26583432

TgeneAPPL2

GO:0051289

protein homotetramerization

23055524

TgeneAPPL2

GO:2000045

regulation of G1/S transition of mitotic cell cycle

15016378


check buttonFusion gene breakpoints across PLXNC1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across APPL2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4GBMTCGA-06-0129-01APLXNC1chr12

94659001

+APPL2chr12

105623001

-


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Fusion Gene ORF analysis for PLXNC1-APPL2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000258526ENST00000539978PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5CDS-5UTRENST00000547057ENST00000539978PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5CDS-intronENST00000258526ENST00000546731PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5CDS-intronENST00000258526ENST00000549573PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5CDS-intronENST00000258526ENST00000551662PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5CDS-intronENST00000547057ENST00000546731PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5CDS-intronENST00000547057ENST00000549573PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5CDS-intronENST00000547057ENST00000551662PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5UTR-3CDSENST00000545312ENST00000258530PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5UTR-5UTRENST00000545312ENST00000539978PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5UTR-intronENST00000545312ENST00000546731PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5UTR-intronENST00000545312ENST00000549573PLXNC1chr12

94659001

+APPL2chr12

105623001

-
5UTR-intronENST00000545312ENST00000551662PLXNC1chr12

94659001

+APPL2chr12

105623001

-
In-frameENST00000258526ENST00000258530PLXNC1chr12

94659001

+APPL2chr12

105623001

-
In-frameENST00000547057ENST00000258530PLXNC1chr12

94659001

+APPL2chr12

105623001

-
intron-3CDSENST00000551495ENST00000258530PLXNC1chr12

94659001

+APPL2chr12

105623001

-
intron-5UTRENST00000551495ENST00000539978PLXNC1chr12

94659001

+APPL2chr12

105623001

-
intron-intronENST00000551495ENST00000546731PLXNC1chr12

94659001

+APPL2chr12

105623001

-
intron-intronENST00000551495ENST00000549573PLXNC1chr12

94659001

+APPL2chr12

105623001

-
intron-intronENST00000551495ENST00000551662PLXNC1chr12

94659001

+APPL2chr12

105623001

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000258526PLXNC1chr1294659001+ENST00000258530APPL2chr12105623001-680538463357861917
ENST00000547057PLXNC1chr1294659001+ENST00000258530APPL2chr12105623001-39349751412915924

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000258526ENST00000258530PLXNC1chr1294659001+APPL2chr12105623001-0.0006785080.99932146
ENST00000547057ENST00000258530PLXNC1chr1294659001+APPL2chr12105623001-0.0006035770.99939644

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Fusion Genomic Features for PLXNC1-APPL2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for PLXNC1-APPL2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:94659001/chr12:105623001)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.APPL2

Q8NEU8

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Multifunctional adapter protein that binds to various membrane receptors, nuclear factors and signaling proteins to regulate many processes, such as cell proliferation, immune response, endosomal trafficking and cell metabolism (PubMed:26583432, PubMed:15016378, PubMed:24879834). Regulates signaling pathway leading to cell proliferation through interaction with RAB5A and subunits of the NuRD/MeCP1 complex (PubMed:15016378). Plays a role in immune response by modulating phagocytosis, inflammatory and innate immune responses. In macrophages, enhances Fc-gamma receptor-mediated phagocytosis through interaction with RAB31 leading to activation of PI3K/Akt signaling. In response to LPS, modulates inflammatory responses by playing a key role on the regulation of TLR4 signaling and in the nuclear translocation of RELA/NF-kappa-B p65 and the secretion of pro- and anti-inflammatory cytokines. Also functions as a negative regulator of innate immune response via inhibition of AKT1 signaling pathway by forming a complex with APPL1 and PIK3R1 (By similarity). Plays a role in endosomal trafficking of TGFBR1 from the endosomes to the nucleus (PubMed:26583432). Plays a role in cell metabolism by regulating adiponecting ans insulin signaling pathways and adaptative thermogenesis (PubMed:24879834) (By similarity). In muscle, negatively regulates adiponectin-simulated glucose uptake and fatty acid oxidation by inhibiting adiponectin signaling pathway through APPL1 sequestration thereby antagonizing APPL1 action (By similarity). In muscles, negativeliy regulates insulin-induced plasma membrane recruitment of GLUT4 and glucose uptake through interaction with TBC1D1 (PubMed:24879834). Plays a role in cold and diet-induced adaptive thermogenesis by activating ventromedial hypothalamus (VMH) neurons throught AMPK inhibition which enhances sympathetic outflow to subcutaneous white adipose tissue (sWAT), sWAT beiging and cold tolerance (By similarity). Also plays a role in other signaling pathways namely Wnt/beta-catenin, HGF and glucocorticoid receptor signaling (PubMed:19433865) (By similarity). Positive regulator of beta-catenin/TCF-dependent transcription through direct interaction with RUVBL2/reptin resulting in the relief of RUVBL2-mediated repression of beta-catenin/TCF target genes by modulating the interactions within the beta-catenin-reptin-HDAC complex (PubMed:19433865). May affect adult neurogenesis in hippocampus and olfactory system via regulating the sensitivity of glucocorticoid receptor. Required for fibroblast migration through HGF cell signaling (By similarity). {ECO:0000250|UniProtKB:Q8K3G9, ECO:0000269|PubMed:15016378, ECO:0000269|PubMed:19433865, ECO:0000269|PubMed:24879834, ECO:0000269|PubMed:26583432}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePLXNC1chr12:94659001chr12:105623001ENST00000258526+213135_45211991569.0DomainSema
HgenePLXNC1chr12:94659001chr12:105623001ENST00000258526+213135_94411991569.0Topological domainExtracellular
HgenePLXNC1chr12:94659001chr12:105623001ENST00000258526+2131945_96511991569.0TransmembraneHelical
TgeneAPPL2chr12:94659001chr12:105623001ENST00000258530021277_37518665.0DomainPH
TgeneAPPL2chr12:94659001chr12:105623001ENST00000258530021488_63718665.0DomainPID
TgeneAPPL2chr12:94659001chr12:105623001ENST00000539978021277_3750622.0DomainPH
TgeneAPPL2chr12:94659001chr12:105623001ENST000005399780213_2680622.0DomainBAR
TgeneAPPL2chr12:94659001chr12:105623001ENST00000539978021488_6370622.0DomainPID
TgeneAPPL2chr12:94659001chr12:105623001ENST00000551662021277_37518671.0DomainPH
TgeneAPPL2chr12:94659001chr12:105623001ENST00000551662021488_63718671.0DomainPID
TgeneAPPL2chr12:94659001chr12:105623001ENST000005399780211_4280622.0RegionRequired for RAB5A binding

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePLXNC1chr12:94659001chr12:105623001ENST00000258526+2131966_156811991569.0Topological domainCytoplasmic
TgeneAPPL2chr12:94659001chr12:105623001ENST000002585300213_26818665.0DomainBAR
TgeneAPPL2chr12:94659001chr12:105623001ENST000005516620213_26818671.0DomainBAR
TgeneAPPL2chr12:94659001chr12:105623001ENST000002585300211_42818665.0RegionRequired for RAB5A binding
TgeneAPPL2chr12:94659001chr12:105623001ENST000005516620211_42818671.0RegionRequired for RAB5A binding


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Fusion Gene Sequence for PLXNC1-APPL2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>66582_66582_1_PLXNC1-APPL2_PLXNC1_chr12_94659001_ENST00000258526_APPL2_chr12_105623001_ENST00000258530_length(transcript)=6805nt_BP=3846nt
GCGAGGAGGAAACGGTGCCGGAGCGCGCAGGGCTTGCTGCCGCCACCGCCGCTGCACAGGCTGCCGGAGCGAGCCTGCCGCGCGCCGCCC
TCCCCGCTCTCCTTCCTGGGCGAGCTGCGGGGATGGGGCGGCCGCGGGAGCCCGAGCGCGCGCAGGAACCGCCGCCGCCGCCGCCCGCGT
CTCCGTTGCCGCGCGCCTGAGCCGCCGTCGCCGCCGCGCGCCCTGCCCGGGGGCGGCCCCCCCAGCCCCATGGAGGTCTCCCGGAGGAAG
GCGCCGCCGCGCCCCCCGCGCCCCGCAGCGCCACTGCCCCTGCTCGCCTATCTGCTGGCACTGGCGGCTCCCGGCCGGGGCGCGGACGAG
CCCGTGTGGCGGTCGGAGCAAGCCATCGGAGCCATCGCGGCGAGCCAGGAGGACGGCGTGTTTGTGGCGAGCGGCAGCTGCCTGGACCAG
CTGGACTACAGCCTGGAGCACAGCCTCTCGCGCCTGTACCGGGACCAAGCGGGCAACTGCACAGAGCCGGTCTCGCTGGCGCCCCCCGCG
CGGCCCCGGCCCGGGAGCAGCTTCAGCAAGCTGCTGCTGCCCTACCGCGAGGGGGCGGCCGGCCTCGGGGGGCTGCTGCTCACCGGCTGG
ACCTTCGACCGGGGCGCCTGCGAGGTGCGGCCCCTGGGCAACCTGAGCCGCAACTCCCTGCGCAACGGCACCGAGGTGGTGTCGTGCCAC
CCGCAGGGCTCGACGGCCGGCGTGGTGTACCGCGCGGGCCGGAACAACCGCTGGTACCTGGCGGTGGCCGCCACCTACGTGCTGCCTGAG
CCGGAGACGGCGAGCCGCTGCAACCCCGCGGCATCCGACCACGACACGGCCATCGCGCTCAAGGACACGGAGGGGCGCAGCCTGGCCACG
CAGGAGCTGGGGCGCCTCAAGCTGTGCGAGGGCGCGGGCAGCCTGCACTTCGTGGACGCCTTTCTCTGGAACGGCAGCATCTACTTCCCC
TACTACCCCTACAACTACACGAGCGGCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACCGAGGTGCTGTTCCAGGGC
CAGGCATCCCTCGACTGCGGCCACGGCCACCCCGACGGCCGCCGCCTGCTCCTCTCCTCCAGCCTAGTGGAGGCCCTGGACGTCTGGGCG
GGAGTGTTCAGCGCGGCCGCTGGAGAGGGCCAGGAGCGGCGCTCCCCCACCACCACGGCGCTCTGCCTCTTCAGAATGAGTGAGATCCAG
GCGCGCGCCAAGAGGGTCAGCTGGGACTTCAAGACGGCCGAGAGCCACTGCAAAGAAGGGGATCAACCTGAAAGAGTCCAACCAATCGCA
TCATCTACCTTGATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAATGAACAGGACTGTTTTATTCTTGGGGACTGGAGATGGC
CAGTTACTTAAGGTTATTCTTGGTGAGAATTTGACTTCAAATTGTCCAGAGGTTATCTATGAAATTAAAGAAGAGACACCTGTTTTCTAC
AAACTCGTTCCTGATCCTGTGAAGAATATCTACATTTATCTAACAGCTGGGAAAGAGGTGAGGAGAATTCGTGTTGCAAACTGCAATAAA
CATAAATCCTGTTCGGAGTGTTTAACAGCCACAGACCCTCACTGCGGTTGGTGCCATTCGCTACAAAGGTGCACTTTTCAAGGAGATTGT
GTACATTCAGAGAACTTAGAAAACTGGCTGGATATTTCGTCTGGAGCAAAAAAGTGCCCTAAAATTCAGATAATTCGAAGCAGTAAAGAA
AAGACTACAGTGACTATGGTGGGAAGCTTCTCTCCAAGACACTCAAAGTGCATGGTGAAGAATGTGGACTCTAGCAGGGAGCTCTGCCAG
AATAAAAGTCAGCCCAACCGGACCTGCACCTGTAGCATCCCAACCAGAGCAACCTACAAAGATGTTTCAGTTGTCAACGTGATGTTCTCC
TTCGGTTCTTGGAATTTATCAGACAGATTCAACTTTACCAACTGCTCATCATTAAAAGAATGCCCAGCATGCGTAGAAACTGGCTGCGCG
TGGTGTAAAAGTGCAAGAAGGTGTATCCACCCCTTCACAGCTTGCGACCCTTCTGATTATGAGAGAAACCAGGAACAGTGTCCAGTGGCT
GTCGAGAAGACATCAGGAGGAGGAAGACCCAAGGAGAACAAGGGGAACAGAACCAACCAGGCTTTACAGGTCTTCTACATTAAGTCCATT
GAGCCACAGAAAGTATCGACATTAGGGAAAAGCAACGTGATAGTAACGGGAGCAAACTTTACCCGGGCATCGAACATCACAATGATCCTG
AAAGGAACCAGTACCTGTGATAAGGATGTGATACAGGTTAGCCATGTGCTAAATGACACCCACATGAAATTCTCTCTTCCATCAAGCCGG
AAAGAAATGAAGGATGTGTGTATCCAGTTTGATGGTGGGAACTGCTCTTCTGTGGGATCCTTATCCTACATTGCTCTGCCACATTGTTCC
CTTATATTTCCTGCTACCACCTGGATCAGTGGTGGTCAAAATATAACCATGATGGGCAGAAATTTTGATGTAATTGACAACTTAATCATT
TCACATGAATTAAAAGGAAACATAAATGTCTCTGAATATTGTGTGGCGACTTACTGCGGGTTTTTAGCCCCCAGTTTAAAGAGTTCAAAA
GTGCGCACGAATGTCACTGTGAAGCTGAGAGTACAAGACACCTACTTGGATTGTGGAACCCTGCAGTATCGGGAGGACCCCAGATTCACG
GGGTATCGGGTGGAATCCGAGGTGGACACAGAACTGGAAGTGAAAATTCAAAAAGAAAATGACAACTTCAACATTTCCAAAAAAGACATT
GAAATTACTCTCTTCCATGGGGAAAATGGGCAATTAAATTGCAGTTTTGAAAATATTACTAGAAATCAAGATCTTACCACCATCCTTTGC
AAAATTAAAGGCATCAAGACTGCAAGCACCATTGCCAACTCTTCTAAGAAAGTTCGGGTCAAGCTGGGAAACCTGGAGCTCTACGTCGAG
CAGGAGTCAGTTCCTTCCACATGGTATTTTCTGATTGTGCTCCCTGTCTTGCTAGTGATTGTCATTTTTGCGGCCGTGGGGGTGACCAGG
CACAAATCGAAGGAGCTGAGTCGCAAACAGAGTCAACAACTAGAATTGCTGGAAAGCGAGCTCCGGAAAGAGATACGTGACGGCTTTGCT
GAGCTGCAGATGGATAAATTGGATGTGGTTGATAGTTTTGGAACTGTTCCCTTCCTTGACTACAAACATTTTGCTCTGAGAACTTTCTTC
CCTGAGTCAGGTGGCTTCACCCACATCTTCACTGAAGATATGCATAACAGAGACGCCAACGACAAGAATGAAAGTCTCACAGCTTTGGAT
GCCCTAATCTGTAATAAAAGCTTTCTTGTTACTGTCATCCACACCCTTGAAAAGCAGAAGAACTTTTCTGTGAAGGACAGGTGTCTGTTT
GCCTCCTTCCTAACCATTGCACTGCAAACCAAGCTGGTCTACCTGACCAGCATCCTAGAGGTGCTGACCAGGGACTTGATGGAACAGTGT
AGTAACATGCAGCCGAAACTCATGCTGAGACGCACGGAGTCCGTCGTCGAAAAACTCCTCACAAACTGGATGTCCGTCTGCCTTTCTGGA
TTTCTCCGGGAGACTGTCGGAGAGCCCTTCTATTTGCTGGTGACGACTCTGAACCAGAAAATTAACAAGGGTCCCGTGGATGTAATCACT
TGCAAAGCCCTGTACACACTTAATGAAGACTGGCTGTTGTGGCAGGTTCCGGAATTCAGTACTGTGACTCGCTCTTTACTGAGCGTGTTT
GAAGAAGATGCTGGCACCCTCACAGACTATACCAACCAGCTGCTCCAGGCAATGCAGCGCGTCTATGGAGCCCAGAATGAGATGTGCCTG
GCCACACAACAGCTTTCTAAGCAACTGCTGGCATATGAAAAACAGAACTTTGCTCTTGGCAAAGGTGATGAAGAAGTAATTTCAACACTC
CACTATTTTTCCAAAGTGGTGGATGAGCTTAATCTTCTCCATACAGAGCTGGCTAAACAGTTGGCAGACACAATGGTTCTACCTATCATA
CAATTCCGAGAAAAGGATCTCACAGAAGTAAGCACTTTAAAGGATCTATTTGGACTCGCTAGCAATGAGCATGACCTCTCAATGGCAAAA
TACAGCAGGCTGCCTAAGAAAAAGGAGAATGAGAAGGTGAAGACCGAAGTCGGAAAAGAGGTGGCCGCGGCCCGGCGGAAGCAGCACCTC
TCCTCCCTTCAGTACTACTGTGCCCTCAACGCGCTGCAGTACAGAAAGCAAATGGCCATGATGGAGCCCATGATAGGCTTTGCCCATGGA
CAGATTAACTTTTTTAAGAAGGGAGCAGAGATGTTTTCCAAACGTATGGACAGCTTTTTATCCTCCGTTGCAGACATGGTTCAAAGCATT
CAGGTAGAACTGGAAGCCGAGGCGGAAAAGATGCGGGTGTCCCAGCAAGAATTACTTTCTGTTGATGAATCTGTTTACACTCCAGACTCT
GATGTGGCCGCACCACAGATCAACAGGAACCTCATCCAGAAGGCTGGTTACCTTAATCTTAGAAACAAAACAGGGCTGGTCACCACCACC
TGGGAGAGGCTTTATTTCTTCACCCAAGGCGGGAATCTCATGTGTCAGCCCAGGGGAGCCGTGGCTGGAGGTTTGATCCAGGACCTGGAC
AACTGCTCAGTGATGGCCGTGGATTGCGAAGACCGGCGCTACTGCTTCCAGATCACCACGCCCAATGGAAAATCGGGAATAATCCTCCAG
GCTGAGAGCAGAAAGGAAAATGAAGAGTGGATATGTGCAATAAACAACATCTCCAGACAGATCTACCTGACCGACAACCCTGAGGCAGTC
GCGATCAAGTTGAATCAGACCGCTCTGCAAGCAGTGACTCCCATTACAAGTTTTGGAAAAAAACAAGAAAGCTCATGCCCCAGCCAGAAC
CTGAAAAATTCAGAGATGGAAAATGAAAATGACAAGATTGTTCCCAAAGCAACAGCCAGTCTACCTGAAGCAGAGGAGCTGATCGCGCCT
GGAACGCCGATTCAATTCGATATTGTGCTTCCTGCTACAGAATTCCTTGATCAGAACAGAGGGAGCAGGCGTACCAACCCTTTTGGTGAA
ACTGAGGATGAATCATTTCCAGAAGCAGAAGATTCTCTTTTGCAGCAGATGTTTATAGTTCGGTTTTTGGGATCAATGGCAGTTAAAACA
GACAGCACTACTGAAGTGATTTATGAAGCGATGAGACAAGTATTGGCTGCTCGGGCTATTCATAACATCTTCCGCATGACAGAATCCCAT
CTGATGGTCACCAGTCAATCTTTGAGGTTGATAGATCCACAGACTCAAGTATCAAGGGCCAATTTTGAACTTACCAGTGTCACACAATTT
GCTGCTCATCAAGAAAACAAGAGACTGGTTGGTTTTGTCATCCGTGTTCCTGAATCCACTGGAGAAGAATCTCTGAGTACATACATTTTT
GAAAGCAACTCAGAAGGCGAAAAGATATGTTATGCTATTAATTTGGGAAAAGAAATTATTGAGGTTCAGAAGGATCCAGAAGCACTGGCT
CAATTAATGCTGTCCATACCACTAACCAATGACGGAAAATATGTACTGTTAAACGATCAACCAGATGACGATGATGGAAATCCAAACGAA
CATAGAGGCGCAGAATCCGAAGCATAACTCACTTGCGCCTGTGGGGGAAGAGCAAACAGGAAGGAGAGCTACCTCCTAAGGGTTTTAACG
TCTCTGACATACAGGCACACTGACCTGATTTCCGAAGGCTGACAATCGTTTGTGGAATGTAATCTTGATGCCTTGATACTGAGACTTGGG
AGGGAAACTAAGAAATGGTTGACAGCGTTCCCACCCATCTACAATGTTATTTTAGGTGCTTTGTGGTAAGTCTTTTTTCTTAGATTGCGC
TAAAATTTCTTAGATTGTTCAGCGCTCAGAACAAAAGTTTGAAAAATGCATTGTTCATATGAATGTCATCTCTTTTCAGTTTCCAGTATC
CTTTTTAAAAAATGGCAAAAGCCTAGATTTACAATTTGATGAACACTAAATATTTCTTATTAATATAATCTATTTTTGTATTTTACTTAA
TGAGCTTTAAGTGCCTGTCGTTCTGAAAATTGTGTATTTATAATTCAGCTTATCTCATAATTGGACCTAATAGCATTTCTTTGTGCAGTT
AGGTGATGAGCACTGCTTTGAGGCCCAAGCACTAGTAGAGATGCGCGATACAGGTCTAGTTTCGGTAACTGTTCCAGACATCAAGCAATA
AAAAAATGAATACCACAAAAGATGTTTGATTTTACAGTGGAGCCTTACTGAACCAGCATTCAGAAGTTTAAGGTCCTCCTAGGTATGAGT
ATTTTTAGTAGTGGATCACTGTGGACAGGGTGCAGCTCTACCAGTTCCTGTTTCTTCTGAGCCAGACCCTCTTCAGGGAAGGGACCAATT
AATTTTAAAACTCACTTGAAGCACAGCTGGTCATGGGGCTTGGTATAAAGTTCCTATTTCCACCCTGATACTTCCAATTCCTGGAACCCC
AGCCCACTCCCCCATCCCTCCTCCCTATCAAACTAGTATAATGATTTTGAATCGGTACAGTGTGTTTAACTGTAACTAAGTTCAACAGAC

>66582_66582_1_PLXNC1-APPL2_PLXNC1_chr12_94659001_ENST00000258526_APPL2_chr12_105623001_ENST00000258530_length(amino acids)=1917AA_BP=1271
MLPPPPLHRLPERACRAPPSPLSFLGELRGWGGRGSPSARRNRRRRRPRLRCRAPEPPSPPRALPGGGPPSPMEVSRRKAPPRPPRPAAP
LPLLAYLLALAAPGRGADEPVWRSEQAIGAIAASQEDGVFVASGSCLDQLDYSLEHSLSRLYRDQAGNCTEPVSLAPPARPRPGSSFSKL
LLPYREGAAGLGGLLLTGWTFDRGACEVRPLGNLSRNSLRNGTEVVSCHPQGSTAGVVYRAGRNNRWYLAVAATYVLPEPETASRCNPAA
SDHDTAIALKDTEGRSLATQELGRLKLCEGAGSLHFVDAFLWNGSIYFPYYPYNYTSGAATGWPSMARIAQSTEVLFQGQASLDCGHGHP
DGRRLLLSSSLVEALDVWAGVFSAAAGEGQERRSPTTTALCLFRMSEIQARAKRVSWDFKTAESHCKEGDQPERVQPIASSTLIHSDLTS
VYGTVVMNRTVLFLGTGDGQLLKVILGENLTSNCPEVIYEIKEETPVFYKLVPDPVKNIYIYLTAGKEVRRIRVANCNKHKSCSECLTAT
DPHCGWCHSLQRCTFQGDCVHSENLENWLDISSGAKKCPKIQIIRSSKEKTTVTMVGSFSPRHSKCMVKNVDSSRELCQNKSQPNRTCTC
SIPTRATYKDVSVVNVMFSFGSWNLSDRFNFTNCSSLKECPACVETGCAWCKSARRCIHPFTACDPSDYERNQEQCPVAVEKTSGGGRPK
ENKGNRTNQALQVFYIKSIEPQKVSTLGKSNVIVTGANFTRASNITMILKGTSTCDKDVIQVSHVLNDTHMKFSLPSSRKEMKDVCIQFD
GGNCSSVGSLSYIALPHCSLIFPATTWISGGQNITMMGRNFDVIDNLIISHELKGNINVSEYCVATYCGFLAPSLKSSKVRTNVTVKLRV
QDTYLDCGTLQYREDPRFTGYRVESEVDTELEVKIQKENDNFNISKKDIEITLFHGENGQLNCSFENITRNQDLTTILCKIKGIKTASTI
ANSSKKVRVKLGNLELYVEQESVPSTWYFLIVLPVLLVIVIFAAVGVTRHKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVD
SFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDANDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTK
LVYLTSILEVLTRDLMEQCSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDW
LLWQVPEFSTVTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELN
LLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKKKENEKVKTEVGKEVAAARRKQHLSSLQYYCALNA
LQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVSQQELLSVDESVYTPDSDVAAPQINRNL
IQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAGGLIQDLDNCSVMAVDCEDRRYCFQITTPNGKSGIILQAESRKENEEWI
CAINNISRQIYLTDNPEAVAIKLNQTALQAVTPITSFGKKQESSCPSQNLKNSEMENENDKIVPKATASLPEAEELIAPGTPIQFDIVLP
ATEFLDQNRGSRRTNPFGETEDESFPEAEDSLLQQMFIVRFLGSMAVKTDSTTEVIYEAMRQVLAARAIHNIFRMTESHLMVTSQSLRLI
DPQTQVSRANFELTSVTQFAAHQENKRLVGFVIRVPESTGEESLSTYIFESNSEGEKICYAINLGKEIIEVQKDPEALAQLMLSIPLTND

--------------------------------------------------------------
>66582_66582_2_PLXNC1-APPL2_PLXNC1_chr12_94659001_ENST00000547057_APPL2_chr12_105623001_ENST00000258530_length(transcript)=3934nt_BP=975nt
ACTTGTAAAATGAGTAAGGTTTTGGTTTTTTTCTGCTGCATTTTGGCATCTTCCTCTTCAGAGTGACCCCTCACTGGGAAATTTTCTTAT
AAGATCCAGCTTTTTAATGCTATTTTCTAGTTTCATTCTAGCTCCTGCTCTCTGTCCCTATCTGTTTTGTTTTTGTTTTTGTTTTTAAGA
ACTGTAAAGATTGCTATTTGTTTTCATTTTTGGTTTTTGAGTTACCATGTCCCTCTGATGCAGCATCTCTGTCTCTTAGCGGCCGTGGGG
GTGACCAGGCACAAATCGAAGGAGCTGAGTCGCAAACAGAGTCAACAACTAGAATTGCTGGAAAGCGAGCTCCGGAAAGAGATACGTGAC
GGCTTTGCTGAGCTGCAGATGGATAAATTGGATGTGGTTGATAGTTTTGGAACTGTTCCCTTCCTTGACTACAAACATTTTGCTCTGAGA
ACTTTCTTCCCTGAGTCAGGTGGCTTCACCCACATCTTCACTGAAGATATGCATAACAGAGACGCCAACGACAAGAATGAAAGTCTCACA
GCTTTGGATGCCCTAATCTGTAATAAAAGCTTTCTTGTTACTGTCATCCACACCCTTGAAAAGCAGAAGAACTTTTCTGTGAAGGACAGG
TGTCTGTTTGCCTCCTTCCTAACCATTGCACTGCAAACCAAGCTGGTCTACCTGACCAGCATCCTAGAGGTGCTGACCAGGGACTTGATG
GAACAGTGTAGTAACATGCAGCCGAAACTCATGCTGAGACGCACGGAGTCCGTCGTCGAAAAACTCCTCACAAACTGGATGTCCGTCTGC
CTTTCTGGATTTCTCCGGGAGACTGTCGGAGAGCCCTTCTATTTGCTGGTGACGACTCTGAACCAGAAAATTAACAAGGGTCCCGTGGAT
GTAATCACTTGCAAAGCCCTGTACACACTTAATGAAGACTGGCTGTTGTGGCAGGTTCCGGAATTCAGTACTGTGACTCGCTCTTTACTG
AGCGTGTTTGAAGAAGATGCTGGCACCCTCACAGACTATACCAACCAGCTGCTCCAGGCAATGCAGCGCGTCTATGGAGCCCAGAATGAG
ATGTGCCTGGCCACACAACAGCTTTCTAAGCAACTGCTGGCATATGAAAAACAGAACTTTGCTCTTGGCAAAGGTGATGAAGAAGTAATT
TCAACACTCCACTATTTTTCCAAAGTGGTGGATGAGCTTAATCTTCTCCATACAGAGCTGGCTAAACAGTTGGCAGACACAATGGTTCTA
CCTATCATACAATTCCGAGAAAAGGATCTCACAGAAGTAAGCACTTTAAAGGATCTATTTGGACTCGCTAGCAATGAGCATGACCTCTCA
ATGGCAAAATACAGCAGGCTGCCTAAGAAAAAGGAGAATGAGAAGGTGAAGACCGAAGTCGGAAAAGAGGTGGCCGCGGCCCGGCGGAAG
CAGCACCTCTCCTCCCTTCAGTACTACTGTGCCCTCAACGCGCTGCAGTACAGAAAGCAAATGGCCATGATGGAGCCCATGATAGGCTTT
GCCCATGGACAGATTAACTTTTTTAAGAAGGGAGCAGAGATGTTTTCCAAACGTATGGACAGCTTTTTATCCTCCGTTGCAGACATGGTT
CAAAGCATTCAGGTAGAACTGGAAGCCGAGGCGGAAAAGATGCGGGTGTCCCAGCAAGAATTACTTTCTGTTGATGAATCTGTTTACACT
CCAGACTCTGATGTGGCCGCACCACAGATCAACAGGAACCTCATCCAGAAGGCTGGTTACCTTAATCTTAGAAACAAAACAGGGCTGGTC
ACCACCACCTGGGAGAGGCTTTATTTCTTCACCCAAGGCGGGAATCTCATGTGTCAGCCCAGGGGAGCCGTGGCTGGAGGTTTGATCCAG
GACCTGGACAACTGCTCAGTGATGGCCGTGGATTGCGAAGACCGGCGCTACTGCTTCCAGATCACCACGCCCAATGGAAAATCGGGAATA
ATCCTCCAGGCTGAGAGCAGAAAGGAAAATGAAGAGTGGATATGTGCAATAAACAACATCTCCAGACAGATCTACCTGACCGACAACCCT
GAGGCAGTCGCGATCAAGTTGAATCAGACCGCTCTGCAAGCAGTGACTCCCATTACAAGTTTTGGAAAAAAACAAGAAAGCTCATGCCCC
AGCCAGAACCTGAAAAATTCAGAGATGGAAAATGAAAATGACAAGATTGTTCCCAAAGCAACAGCCAGTCTACCTGAAGCAGAGGAGCTG
ATCGCGCCTGGAACGCCGATTCAATTCGATATTGTGCTTCCTGCTACAGAATTCCTTGATCAGAACAGAGGGAGCAGGCGTACCAACCCT
TTTGGTGAAACTGAGGATGAATCATTTCCAGAAGCAGAAGATTCTCTTTTGCAGCAGATGTTTATAGTTCGGTTTTTGGGATCAATGGCA
GTTAAAACAGACAGCACTACTGAAGTGATTTATGAAGCGATGAGACAAGTATTGGCTGCTCGGGCTATTCATAACATCTTCCGCATGACA
GAATCCCATCTGATGGTCACCAGTCAATCTTTGAGGTTGATAGATCCACAGACTCAAGTATCAAGGGCCAATTTTGAACTTACCAGTGTC
ACACAATTTGCTGCTCATCAAGAAAACAAGAGACTGGTTGGTTTTGTCATCCGTGTTCCTGAATCCACTGGAGAAGAATCTCTGAGTACA
TACATTTTTGAAAGCAACTCAGAAGGCGAAAAGATATGTTATGCTATTAATTTGGGAAAAGAAATTATTGAGGTTCAGAAGGATCCAGAA
GCACTGGCTCAATTAATGCTGTCCATACCACTAACCAATGACGGAAAATATGTACTGTTAAACGATCAACCAGATGACGATGATGGAAAT
CCAAACGAACATAGAGGCGCAGAATCCGAAGCATAACTCACTTGCGCCTGTGGGGGAAGAGCAAACAGGAAGGAGAGCTACCTCCTAAGG
GTTTTAACGTCTCTGACATACAGGCACACTGACCTGATTTCCGAAGGCTGACAATCGTTTGTGGAATGTAATCTTGATGCCTTGATACTG
AGACTTGGGAGGGAAACTAAGAAATGGTTGACAGCGTTCCCACCCATCTACAATGTTATTTTAGGTGCTTTGTGGTAAGTCTTTTTTCTT
AGATTGCGCTAAAATTTCTTAGATTGTTCAGCGCTCAGAACAAAAGTTTGAAAAATGCATTGTTCATATGAATGTCATCTCTTTTCAGTT
TCCAGTATCCTTTTTAAAAAATGGCAAAAGCCTAGATTTACAATTTGATGAACACTAAATATTTCTTATTAATATAATCTATTTTTGTAT
TTTACTTAATGAGCTTTAAGTGCCTGTCGTTCTGAAAATTGTGTATTTATAATTCAGCTTATCTCATAATTGGACCTAATAGCATTTCTT
TGTGCAGTTAGGTGATGAGCACTGCTTTGAGGCCCAAGCACTAGTAGAGATGCGCGATACAGGTCTAGTTTCGGTAACTGTTCCAGACAT
CAAGCAATAAAAAAATGAATACCACAAAAGATGTTTGATTTTACAGTGGAGCCTTACTGAACCAGCATTCAGAAGTTTAAGGTCCTCCTA
GGTATGAGTATTTTTAGTAGTGGATCACTGTGGACAGGGTGCAGCTCTACCAGTTCCTGTTTCTTCTGAGCCAGACCCTCTTCAGGGAAG
GGACCAATTAATTTTAAAACTCACTTGAAGCACAGCTGGTCATGGGGCTTGGTATAAAGTTCCTATTTCCACCCTGATACTTCCAATTCC
TGGAACCCCAGCCCACTCCCCCATCCCTCCTCCCTATCAAACTAGTATAATGATTTTGAATCGGTACAGTGTGTTTAACTGTAACTAAGT

>66582_66582_2_PLXNC1-APPL2_PLXNC1_chr12_94659001_ENST00000547057_APPL2_chr12_105623001_ENST00000258530_length(amino acids)=924AA_BP=278
MSLSVLFLFLFLRTVKIAICFHFWFLSYHVPLMQHLCLLAAVGVTRHKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFG
TVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDANDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVY
LTSILEVLTRDLMEQCSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLW
QVPEFSTVTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLH
TELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKKKENEKVKTEVGKEVAAARRKQHLSSLQYYCALNALQY
RKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVSQQELLSVDESVYTPDSDVAAPQINRNLIQK
AGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAGGLIQDLDNCSVMAVDCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAI
NNISRQIYLTDNPEAVAIKLNQTALQAVTPITSFGKKQESSCPSQNLKNSEMENENDKIVPKATASLPEAEELIAPGTPIQFDIVLPATE
FLDQNRGSRRTNPFGETEDESFPEAEDSLLQQMFIVRFLGSMAVKTDSTTEVIYEAMRQVLAARAIHNIFRMTESHLMVTSQSLRLIDPQ
TQVSRANFELTSVTQFAAHQENKRLVGFVIRVPESTGEESLSTYIFESNSEGEKICYAINLGKEIIEVQKDPEALAQLMLSIPLTNDGKY

--------------------------------------------------------------

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Fusion Gene PPI Analysis for PLXNC1-APPL2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for PLXNC1-APPL2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for PLXNC1-APPL2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource