FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:PPIG-SSB (FusionGDB2 ID:67549)

Fusion Gene Summary for PPIG-SSB

check button Fusion gene summary
Fusion gene informationFusion gene name: PPIG-SSB
Fusion gene ID: 67549
HgeneTgene
Gene symbol

PPIG

SSB

Gene ID

9360

6741

Gene namepeptidylprolyl isomerase Gsmall RNA binding exonuclease protection factor La
SynonymsCARS-Cyp|CYP|SCAF10|SRCypLARP3|La|La/SSB
Cytomap

2q31.1

2q31.1

Type of geneprotein-codingprotein-coding
Descriptionpeptidyl-prolyl cis-trans isomerase GCARS-cyclophilinCASP10Clk-associating RS-cyclophilinPPIase GSR-cyclophilinSR-cypSR-related CTD-associated factor 10cyclophilin Gpeptidyl-prolyl isomerase G (cyclophilin G)rotamase Glupus La proteinLa ribonucleoprotein domain family, member 3SS-BSS-B/La proteinSjogren syndrome antigen Bautoantigen Lala autoantigenlupus La antigensjoegren syndrome type B antigen
Modification date2020031320200313
UniProtAcc.

P81877

Ensembl transtripts involved in fusion geneENST00000260970, ENST00000409714, 
ENST00000448752, ENST00000462903, 
ENST00000482772, 		ENST00000260956, 
ENST00000409333, 
Fusion gene scores* DoF score10 X 12 X 7=8409 X 12 X 7=756
# samples 1615
** MAII scorelog2(16/840*10)=-2.39231742277876
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(15/756*10)=-2.33342373372519
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PPIG [Title/Abstract] AND SSB [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPPIG(170471191)-SSB(170661984), # samples:2
PPIG(170460771)-SSB(170649083), # samples:2
Anticipated loss of major functional domain due to fusion event.PPIG-SSB seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePPIG

GO:0000413

protein peptidyl-prolyl isomerization

20676357

TgeneSSB

GO:0075522

IRES-dependent viral translational initiation

12384597

TgeneSSB

GO:1903608

protein localization to cytoplasmic stress granule

24965446


check buttonFusion gene breakpoints across PPIG (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across SSB (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4HNSCTCGA-F7-A623-01APPIGchr2

170471191

+SSBchr2

170661984

+
ChimerDB4HNSCTCGA-F7-A623PPIGchr2

170471191

+SSBchr2

170661984

+
ChimerDB4HNSCTCGA-F7-A623PPIGchr2

170471234

+SSBchr2

170661984

+
ChimerDB4UCSTCGA-N8-A4PP-01APPIGchr2

170460771

+SSBchr2

170649083

+
ChimerDB4UCSTCGA-N8-A4PPPPIGchr2

170460771

+SSBchr2

170649083

+
ChimerDB4UCSTCGA-N8-A4PPPPIGchr2

170460771

+SSBchr2

170650161

+


Top

Fusion Gene ORF analysis for PPIG-SSB

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000260970ENST00000260956PPIGchr2

170460771

+SSBchr2

170649083

+
5CDS-intronENST00000260970ENST00000260956PPIGchr2

170460771

+SSBchr2

170650161

+
5CDS-intronENST00000260970ENST00000409333PPIGchr2

170460771

+SSBchr2

170649083

+
5CDS-intronENST00000260970ENST00000409333PPIGchr2

170460771

+SSBchr2

170650161

+
5CDS-intronENST00000409714ENST00000260956PPIGchr2

170460771

+SSBchr2

170649083

+
5CDS-intronENST00000409714ENST00000260956PPIGchr2

170460771

+SSBchr2

170650161

+
5CDS-intronENST00000409714ENST00000409333PPIGchr2

170460771

+SSBchr2

170649083

+
5CDS-intronENST00000409714ENST00000409333PPIGchr2

170460771

+SSBchr2

170650161

+
5CDS-intronENST00000448752ENST00000260956PPIGchr2

170460771

+SSBchr2

170649083

+
5CDS-intronENST00000448752ENST00000260956PPIGchr2

170460771

+SSBchr2

170650161

+
5CDS-intronENST00000448752ENST00000409333PPIGchr2

170460771

+SSBchr2

170649083

+
5CDS-intronENST00000448752ENST00000409333PPIGchr2

170460771

+SSBchr2

170650161

+
5CDS-intronENST00000462903ENST00000260956PPIGchr2

170460771

+SSBchr2

170649083

+
5CDS-intronENST00000462903ENST00000260956PPIGchr2

170460771

+SSBchr2

170650161

+
5CDS-intronENST00000462903ENST00000409333PPIGchr2

170460771

+SSBchr2

170649083

+
5CDS-intronENST00000462903ENST00000409333PPIGchr2

170460771

+SSBchr2

170650161

+
Frame-shiftENST00000260970ENST00000260956PPIGchr2

170471191

+SSBchr2

170661984

+
Frame-shiftENST00000260970ENST00000260956PPIGchr2

170471234

+SSBchr2

170661984

+
Frame-shiftENST00000260970ENST00000409333PPIGchr2

170471191

+SSBchr2

170661984

+
Frame-shiftENST00000260970ENST00000409333PPIGchr2

170471234

+SSBchr2

170661984

+
Frame-shiftENST00000409714ENST00000260956PPIGchr2

170471191

+SSBchr2

170661984

+
Frame-shiftENST00000409714ENST00000260956PPIGchr2

170471234

+SSBchr2

170661984

+
Frame-shiftENST00000409714ENST00000409333PPIGchr2

170471191

+SSBchr2

170661984

+
Frame-shiftENST00000409714ENST00000409333PPIGchr2

170471234

+SSBchr2

170661984

+
Frame-shiftENST00000448752ENST00000260956PPIGchr2

170471191

+SSBchr2

170661984

+
Frame-shiftENST00000448752ENST00000260956PPIGchr2

170471234

+SSBchr2

170661984

+
Frame-shiftENST00000448752ENST00000409333PPIGchr2

170471191

+SSBchr2

170661984

+
Frame-shiftENST00000448752ENST00000409333PPIGchr2

170471234

+SSBchr2

170661984

+
Frame-shiftENST00000462903ENST00000260956PPIGchr2

170471191

+SSBchr2

170661984

+
Frame-shiftENST00000462903ENST00000260956PPIGchr2

170471234

+SSBchr2

170661984

+
Frame-shiftENST00000462903ENST00000409333PPIGchr2

170471191

+SSBchr2

170661984

+
Frame-shiftENST00000462903ENST00000409333PPIGchr2

170471234

+SSBchr2

170661984

+
intron-3CDSENST00000482772ENST00000260956PPIGchr2

170471191

+SSBchr2

170661984

+
intron-3CDSENST00000482772ENST00000260956PPIGchr2

170471234

+SSBchr2

170661984

+
intron-3CDSENST00000482772ENST00000409333PPIGchr2

170471191

+SSBchr2

170661984

+
intron-3CDSENST00000482772ENST00000409333PPIGchr2

170471234

+SSBchr2

170661984

+
intron-intronENST00000482772ENST00000260956PPIGchr2

170460771

+SSBchr2

170649083

+
intron-intronENST00000482772ENST00000260956PPIGchr2

170460771

+SSBchr2

170650161

+
intron-intronENST00000482772ENST00000409333PPIGchr2

170460771

+SSBchr2

170649083

+
intron-intronENST00000482772ENST00000409333PPIGchr2

170460771

+SSBchr2

170650161

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

Top

Fusion Genomic Features for PPIG-SSB


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
PPIGchr2170471234+SSBchr2170661983+2.56E-060.9999974
PPIGchr2170471234+SSBchr2170661983+2.56E-060.9999974

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

Top

Fusion Protein Features for PPIG-SSB


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:170471191/:170661984)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.SSB

P81877

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

Fusion Gene Sequence for PPIG-SSB


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

Top

Fusion Gene PPI Analysis for PPIG-SSB


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for PPIG-SSB


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for PPIG-SSB


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource