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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:PPP4R1-VAPA (FusionGDB2 ID:68199) |
Fusion Gene Summary for PPP4R1-VAPA |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PPP4R1-VAPA | Fusion gene ID: 68199 | Hgene | Tgene | Gene symbol | PPP4R1 | VAPA | Gene ID | 9989 | 9218 |
| Gene name | protein phosphatase 4 regulatory subunit 1 | VAMP associated protein A | |
| Synonyms | MEG1|PP4(Rmeg)|PP4R1 | VAP-33|VAP-A|VAP33|hVAP-33 | |
| Cytomap | 18p11.22 | 18p11.22 | |
| Type of gene | protein-coding | protein-coding | |
| Description | serine/threonine-protein phosphatase 4 regulatory subunit 1serine/threonine phosphatase 4 | vesicle-associated membrane protein-associated protein A33 kDa VAMP-associated proteinVAMP (vesicle-associated membrane protein)-associated protein A, 33kDaVAMP-Aepididymis secretory sperm binding protein | |
| Modification date | 20200313 | 20200327 | |
| UniProtAcc | . | . | |
| Ensembl transtripts involved in fusion gene | ENST00000400555, ENST00000400556, ENST00000580583, | ENST00000584796, ENST00000340541, ENST00000400000, | |
| Fusion gene scores | * DoF score | 13 X 13 X 9=1521 | 12 X 11 X 6=792 |
| # samples | 14 | 14 | |
| ** MAII score | log2(14/1521*10)=-3.44152142077953 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(14/792*10)=-2.50007360313464 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: PPP4R1 [Title/Abstract] AND VAPA [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | PPP4R1(9614223)-VAPA(9931806), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | VAPA | GO:0044791 | positive regulation by host of viral release from host cell | 19515777 |
| Tgene | VAPA | GO:0044828 | negative regulation by host of viral genome replication | 19515777 |
| Tgene | VAPA | GO:0044829 | positive regulation by host of viral genome replication | 19515777 |
| Fusion gene breakpoints across PPP4R1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across VAPA (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | UCEC | TCGA-FI-A2EX | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
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Fusion Gene ORF analysis for PPP4R1-VAPA |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-3UTR | ENST00000400555 | ENST00000584796 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
| 5CDS-3UTR | ENST00000400556 | ENST00000584796 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
| In-frame | ENST00000400555 | ENST00000340541 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
| In-frame | ENST00000400555 | ENST00000400000 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
| In-frame | ENST00000400556 | ENST00000340541 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
| In-frame | ENST00000400556 | ENST00000400000 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
| intron-3CDS | ENST00000580583 | ENST00000340541 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
| intron-3CDS | ENST00000580583 | ENST00000400000 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
| intron-3UTR | ENST00000580583 | ENST00000584796 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000400556 | PPP4R1 | chr18 | 9614223 | - | ENST00000400000 | VAPA | chr18 | 9931806 | + | 6607 | 126 | 74 | 796 | 240 |
| ENST00000400556 | PPP4R1 | chr18 | 9614223 | - | ENST00000340541 | VAPA | chr18 | 9931806 | + | 1079 | 126 | 74 | 931 | 285 |
| ENST00000400555 | PPP4R1 | chr18 | 9614223 | - | ENST00000400000 | VAPA | chr18 | 9931806 | + | 6618 | 137 | 85 | 807 | 240 |
| ENST00000400555 | PPP4R1 | chr18 | 9614223 | - | ENST00000340541 | VAPA | chr18 | 9931806 | + | 1090 | 137 | 85 | 942 | 285 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000400556 | ENST00000400000 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + | 0.000334646 | 0.9996654 |
| ENST00000400556 | ENST00000340541 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + | 0.001704533 | 0.9982955 |
| ENST00000400555 | ENST00000400000 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + | 0.000335752 | 0.9996643 |
| ENST00000400555 | ENST00000340541 | PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + | 0.001692505 | 0.99830747 |
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Fusion Genomic Features for PPP4R1-VAPA |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + | 6.17E-07 | 0.9999994 |
| PPP4R1 | chr18 | 9614223 | - | VAPA | chr18 | 9931806 | + | 6.17E-07 | 0.9999994 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for PPP4R1-VAPA |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr18:9614223/chr18:9931806) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | . |
| FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | VAPA | chr18:9614223 | chr18:9931806 | ENST00000340541 | 0 | 7 | 169_205 | 26 | 295.0 | Coiled coil | Ontology_term=ECO:0000255 | |
| Tgene | VAPA | chr18:9614223 | chr18:9931806 | ENST00000400000 | 0 | 6 | 169_205 | 26 | 250.0 | Coiled coil | Ontology_term=ECO:0000255 | |
| Tgene | VAPA | chr18:9614223 | chr18:9931806 | ENST00000340541 | 0 | 7 | 228_248 | 26 | 295.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein | |
| Tgene | VAPA | chr18:9614223 | chr18:9931806 | ENST00000400000 | 0 | 6 | 228_248 | 26 | 250.0 | Transmembrane | Helical%3B Anchor for type IV membrane protein |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 127_164 | 17 | 934.0 | Repeat | Note=HEAT 5 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 168_206 | 17 | 934.0 | Repeat | Note=HEAT 6 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 1_25 | 17 | 934.0 | Repeat | Note=HEAT 1 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 208_246 | 17 | 934.0 | Repeat | Note=HEAT 7 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 248_285 | 17 | 934.0 | Repeat | Note=HEAT 8 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 26_63 | 17 | 934.0 | Repeat | Note=HEAT 2 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 287_324 | 17 | 934.0 | Repeat | Note=HEAT 9 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 505_542 | 17 | 934.0 | Repeat | Note=HEAT 10 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 568_606 | 17 | 934.0 | Repeat | Note=HEAT 11 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 65_81 | 17 | 934.0 | Repeat | Note=HEAT 3 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 698_734 | 17 | 934.0 | Repeat | Note=HEAT 12 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 799_837 | 17 | 934.0 | Repeat | Note=HEAT 13 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 82_119 | 17 | 934.0 | Repeat | Note=HEAT 4 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400555 | - | 2 | 20 | 861_898 | 17 | 934.0 | Repeat | Note=HEAT 14 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 127_164 | 17 | 951.0 | Repeat | Note=HEAT 5 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 168_206 | 17 | 951.0 | Repeat | Note=HEAT 6 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 1_25 | 17 | 951.0 | Repeat | Note=HEAT 1 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 208_246 | 17 | 951.0 | Repeat | Note=HEAT 7 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 248_285 | 17 | 951.0 | Repeat | Note=HEAT 8 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 26_63 | 17 | 951.0 | Repeat | Note=HEAT 2 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 287_324 | 17 | 951.0 | Repeat | Note=HEAT 9 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 505_542 | 17 | 951.0 | Repeat | Note=HEAT 10 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 568_606 | 17 | 951.0 | Repeat | Note=HEAT 11 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 65_81 | 17 | 951.0 | Repeat | Note=HEAT 3 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 698_734 | 17 | 951.0 | Repeat | Note=HEAT 12 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 799_837 | 17 | 951.0 | Repeat | Note=HEAT 13 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 82_119 | 17 | 951.0 | Repeat | Note=HEAT 4 |
| Hgene | PPP4R1 | chr18:9614223 | chr18:9931806 | ENST00000400556 | - | 2 | 20 | 861_898 | 17 | 951.0 | Repeat | Note=HEAT 14 |
| Tgene | VAPA | chr18:9614223 | chr18:9931806 | ENST00000340541 | 0 | 7 | 14_131 | 26 | 295.0 | Domain | MSP | |
| Tgene | VAPA | chr18:9614223 | chr18:9931806 | ENST00000400000 | 0 | 6 | 14_131 | 26 | 250.0 | Domain | MSP | |
| Tgene | VAPA | chr18:9614223 | chr18:9931806 | ENST00000340541 | 0 | 7 | 2_227 | 26 | 295.0 | Topological domain | Cytoplasmic | |
| Tgene | VAPA | chr18:9614223 | chr18:9931806 | ENST00000400000 | 0 | 6 | 2_227 | 26 | 250.0 | Topological domain | Cytoplasmic |
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Fusion Gene Sequence for PPP4R1-VAPA |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >68199_68199_1_PPP4R1-VAPA_PPP4R1_chr18_9614223_ENST00000400555_VAPA_chr18_9931806_ENST00000340541_length(transcript)=1090nt_BP=137nt GCGCGCGTCCACCGGCTCCCCGGCTCGCGCCGCTCCATGTAGCCCCGGCTCCCCGGGCGGCCGCGGAGGAGGGGGCGACCACAAGATGGC GGACCTCTCGCTGCTTCAGGAGGACCTGCAGGAGGACGCAGACGGATGCCCCTTCACAGATGTAGTCACTACAAATCTTAAATTGCGAAA TCCATCGGATAGAAAAGTGTGTTTCAAAGTGAAGACTACAGCACCTCGCCGGTACTGTGTGAGGCCCAACAGTGGAATTATTGACCCAGG GTCAACTGTGACTGTTTCAGTAATGCTACAGCCCTTTGACTATGATCCGAATGAAAAGAGTAAACACAAGTTTATGGTACAGACAATTTT TGCTCCACCAAACACTTCAGATATGGAAGCTGTGTGGAAAGAGGCAAAACCTGATGAATTAATGGATTCCAAATTGAGATGCGTATTTGA AATGCCCAATGAAAATGATAAATTGGGTATAACTCCACCAGGGAATGCTCCGACTGTCACTTCAATGAGCAGCATCAACAACACAGTTGC AACACCTGCCAGTTATCACACGAAGGATGACCCCAGGGGACTCAGTGTGTTGAAACAGGAGAAACAGAAGAATGATATGGAACCTAGCAA AGCTGTTCCACTGAATGCATCTAAGCAAGATGGACCTATGCCAAAACCACACAGTGTTTCACTTAATGATACCGAAACAAGGAAACTAAT GGAAGAGTGTAAAAGACTTCAGGGAGAAATGATGAAGCTATCAGAAGAAAATCGGCACCTGAGAGATGAAGGTTTAAGGCTCAGAAAGGT AGCACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCAGAGATAATGTCACCAGTCCTCTTCCTTCACTTCTTGTTGTAATTGC AGCCATTTTCATTGGATTCTTTCTAGGGAAATTCATCTTGTAGAGTGAAGCATGCAGAGTGCTGTTTCTTTTTTTTTTTTTCTCTTGACC AGAAAAAGATTTGTTTACCTACCATTTCATTGGTAGTATGGCCCACGGTGACCATTTTTTTGTGTGTACAGCGTCATATAGGCTTTGCCT >68199_68199_1_PPP4R1-VAPA_PPP4R1_chr18_9614223_ENST00000400555_VAPA_chr18_9931806_ENST00000340541_length(amino acids)=285AA_BP=18 MADLSLLQEDLQEDADGCPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQT IFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPRGLSVLKQEKQKNDMEP SKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVV -------------------------------------------------------------- >68199_68199_2_PPP4R1-VAPA_PPP4R1_chr18_9614223_ENST00000400555_VAPA_chr18_9931806_ENST00000400000_length(transcript)=6618nt_BP=137nt GCGCGCGTCCACCGGCTCCCCGGCTCGCGCCGCTCCATGTAGCCCCGGCTCCCCGGGCGGCCGCGGAGGAGGGGGCGACCACAAGATGGC GGACCTCTCGCTGCTTCAGGAGGACCTGCAGGAGGACGCAGACGGATGCCCCTTCACAGATGTAGTCACTACAAATCTTAAATTGCGAAA TCCATCGGATAGAAAAGTGTGTTTCAAAGTGAAGACTACAGCACCTCGCCGGTACTGTGTGAGGCCCAACAGTGGAATTATTGACCCAGG GTCAACTGTGACTGTTTCAGTAATGCTACAGCCCTTTGACTATGATCCGAATGAAAAGAGTAAACACAAGTTTATGGTACAGACAATTTT TGCTCCACCAAACACTTCAGATATGGAAGCTGTGTGGAAAGAGGCAAAACCTGATGAATTAATGGATTCCAAATTGAGATGCGTATTTGA AATGCCCAATGAAAATGATAAATTGAATGATATGGAACCTAGCAAAGCTGTTCCACTGAATGCATCTAAGCAAGATGGACCTATGCCAAA ACCACACAGTGTTTCACTTAATGATACCGAAACAAGGAAACTAATGGAAGAGTGTAAAAGACTTCAGGGAGAAATGATGAAGCTATCAGA AGAAAATCGGCACCTGAGAGATGAAGGTTTAAGGCTCAGAAAGGTAGCACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCAG AGATAATGTCACCAGTCCTCTTCCTTCACTTCTTGTTGTAATTGCAGCCATTTTCATTGGATTCTTTCTAGGGAAATTCATCTTGTAGAG TGAAGCATGCAGAGTGCTGTTTCTTTTTTTTTTTTTCTCTTGACCAGAAAAAGATTTGTTTACCTACCATTTCATTGGTAGTATGGCCCA CGGTGACCATTTTTTTGTGTGTACAGCGTCATATAGGCTTTGCCTTTAATGATCTCTTACGGTTAGAAAACACAATAAAAACAAACTGTT CGGCTACTGGACAGGTTGTATATTACCAGATCATCACTAGCAGATGTCAGTTGCACATTGAGTCCTTTATGAAATTCATAAATAAAGAAT TGTTCTTTCTTTGTGGTTTTAATAAGAGTTCAAGAATTGTTCAGAGTCTTGTAAATGTTATTTTAATAATCCCTTTAAATTTTATCTGTT GCTGTTACCTCTTGAAATATGATTTATTTAGATTGCTAATCCCACTCATTCAGGAAATGCCAAGAGGTATTCCTTGGGGAAATGGTGCCT CTTACAGTGTAAATTTTTCCTCCTTTACCTTTGCTAATATCATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGTTGTTGACTGAGTTTT TCATCCTTACAATCCTGTCCCATGGTATTTAACATAAAAAAAAATAAAACTGTTAACAGATTCTTGCTCGATAGCTTGTTTGTGTCTGTC GTGTTATTAGAGGGAACTCCACTATATATGGTCACTTGAAATTATGATGCAAAGGTTTCTCTTGCATTGAAACCCTCTTGGATATTACAG TATTTTTAATTGAAAGTCCTAATTCTGTTAAGGAAAGGAGTTGATTAAATTTTAAGGTACCACTGGTATTTTGGGAGATTATAATCAGTT TGTTTTCAAGATAATAGAAAATAAGGTCCATGAGAATAGAAGTTATGTGATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATC TGATTTACCCCATTCTTAAGTTCTGAGAGTATGTTCTCAAGGAAGATTTAACTCTCTTTGGTTTTAAATTACTTTTTAACCAGCCTAATA AATAAGTCTTACTACTTTTCATAATATTTCATAATAGTTAAAAGTAGGTGTTTTTTTCGTGCTCAATTTGGCACTCAAAATAATGTTCAT TATGGAAGTTTGGTAATACTGAGCAAGCCTGTGGAATTTTCTTTATGAAAAATGATTTTAGCCTTTGCAAATGTTAACCATGTGAAACAC ATTTTCAGTATAAGTATGCGTTACAGGGTTTGATACTTTCCTGCACTTAGGTTTGTCCTATTCTTCATTTATTCATACTAGGATAGAAAA TTTTGGAATCAGAAAATAGATCCAGTGTTTAGCTACATACAATCTAGTACAAGTGAATTTTTATTCTTAAACATAGGTGTGTTGGCTCTT TTTTTAAAAGATGCGCTCTACCTGAAAAGGAAATTGGATTTTAGAACTGGATGTGGTGCAGTGAAGTATTTTAGGCCCAGGTCTGTGTAC ACATTTTATAGAAGAATGAAGTACTCTGAAGTATTTTGGTTGCCTTTTCATTTCAACTGTGTTTTGAATTTGTCAGATCACACATATATT GTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCAAAAGTTCCTAAAAGGAAACACAAGTAATGCCTATCCATTA CTAGCATGCTATGCTGCATGCTTTACTGCCATTGCTGTATGCTTTACTGTCTTTGTAAAAATCCCCCTCTCCCCTTTTCTGGTAACTGGA AAAGCATGCTAAAAATAGTCTTATATTTTCACCCCATAAATGCAGAATCAGTAATTCCTTGGCTTAAAGCTCTTATATAATCAATATTAT TGGTGGTAAATACCAAGTTTGGTATCTCATAGCTATCTTTTTTTAAAGAAATTAAGTTCTTGAAAATTTAGCCAAATCCCGTTTTATGGG AATGCTCTTTAGAATTCATTTTGTTCAGCCCCTTTGTTCTATGGTTGAGAAATCTGAGGCCTTACGAAGGTTAAGAGAACTTTCCCCGTG TCTCACAGGTAGGTAGAGGCAGAGCTGGAACTAGATATCTGGTCTGTTGACTCTAGCTCAGTGTCTTCTGGTAACTGTTGAAAATTGTCT TAGTTTGAGAGATGGCTGAAATAATGAACATAAAATGCTATTTATAATAACAAGTATATGTGAAATTTCTTATTGTAAGACTACTACCGG CTTACTGTTGAATAGTTTGGTTATAGTGTTTAGGCTAGAAATGCCTCCCACATTGGTAATAAACATTACAAAATACAATGTATTTTTAGG TAGGCATTTTATAAAATGCATTATGCCATGGTTGCTTTTGAGATAGATTGTAGTCTGGGTAGCATCTTTAAAATGTATGTGGGCTTAACT GTTGTTCATATCAGGAGATGCTCTGATTGTATAGGTGAGACTCTGTTTCTGTTATTTTTAATTGCTGTATGAAATGTGATCAGATTATTT TACTACCAACAGTTATAGTTTGAAAGTCCAACTGTATTAATTGACTGATAATATGATAATATAGAGATTAAATTGTTTGTCTTCATTCCT TATATGTTTAGAAGTTTTTGCTTTGTCTGCCTGCTTACTTGTATATGTAAGCATGAGGGAAATACACTGTTGCTAATACTGAAATTACAA TCAAGTAACTAAGGCCTTGAGTTCATATGTGACACTGAATGCACTAGCTTCCTTCGTTCTATAACTAATGTACCTTAACTTCCCCCATTC TTATATTTACAAGAAGCTAAGTCATTATGTTCTGAGTGTGTGGTATGTTCCCTTAAAAAAAAATGACACTTGGAAGAAAAATGTATGAAA TTCAGAAATTCCGATCAAAGAAAAGTAATTCTTTCTTTTTTTTTTTGAGACAGAGTCTTGCTTTGTTGCCCAGGCTGGAGGGCAGTGGTG TGATCTCACCTCACTGCAGCTTCCGCCTCCTGGGTTCAAGTGATTCTCATGGCTCAGCCGCCTGAGTAGCTGGGATTACAGGTGTGAGCC AACAAGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAAGGTTTCACCATGTTGGTCAGGCTGGGCTCAAACTCCTGAATCCGCCTGCCT CGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCTGCCGCACCCAGCCAAGAAAAATAATACTCTTAAATACTTAGATGTTCACCTAAA GTTGATATTATTTGGTATGGGAATTACTTTTGAACTGTAATCTTTCAGATTACACCACTTTGAAAACAAGTTTTAACAGTAGGGTAAAAA TATAGTTTTTGAGGGTATTCCCAACTTGTGATCTTCTACCACTTTAGAGACATTCAAGTAATAGTTTTCTTAGAGCTTTGCACATTCCTA TTCACTGAGATTTTAAAAATTTCACCTTTATTCGAGGGAAGGATCAATGCTTATTACCATTTGGAAAAACGAAGATCAGAAGGTAAATGA TCTTTATTTTCTAGCTTTAAAGGGAAATTAAACCATTCATGAATAAACTTTAAAAATGTGAAGTGTCCTTTTCCTTTTCACAATACAAAA AAAATTTCAACAGATTGTGTGGTTTGTGCATTTATATCCTGTTAAGCATTAATAGCTAATCACTGGGACTTGAATTCTGATGGCAGATAG TCTCTTGCTTAGTGAGATGGAGTTAACTATTTTTTAGTAGGAAGTGAGAACAGCTGATTTTCATGCCACGTTTCATAGCCCCACTTTTGG TAGACTACCACCACGCTTCTTCGCGTAAGCAGTGGCATCTTGGGAATGAATGCCCAGCCGCTCGTGGGTTGGTGCAAAGAAGTATAAACA TATATCACTAAGGAAAAAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTGGAAAATATAAAAAATTCCAA ATTCTGCCTTTCAGCAGCATCAATTGCTAGGAACATTTCATTCATTTCCCTGTAATATTAATGTTCTTTAAGCATAATCACTAATTATAA GTTGTATCCTATTTTTTTCCAGCTTAATTTCTGTGGTTTATTGAAAACCAAGTATAAATGTGACTAAAAGCATTTTGCTTTGTTTTTATA GTTAACTTTCTTAAGGTTATGGACATTTTATAATGTAACATTTGATTGGCCTGGCCTCTTGACAATTCCCTTCTAGTTATGCATATCCTC CTGTTGCCACATTTCTTGTTTTAAAACTCAGTTTCTTGTTTTCCAGTTGTTGCTATGTATAACACCCATCTTGAAAGAGAGTATATAGGA AGTTATTCAGATAACTTTTGTAGTAGTGATATTCAACTATAGCAGTACCTTAACTCATGATGAGCTTAGGAACATAAAAGATAATTGTTG CTTGAATAGCACCCCCAGAGATACTGACCTAATTGGTCTGGGGTGGAGATCTGGCATGGTAGTTTTTTTCAAGCTCCAATCATCGGCCAG ACAGTTGCTTTATGTAGGTTTTTAAATGCCAAAGGCAGATATGAAGTAGATTTAATTAAGACTTGACTTCAGCAATACAGGGGAACTTAA AATACTTATTTTTCTTTAAACTGCAGGAGTCACTGTTAGGTATTGCTTAAAAAAAATTGCATAAAAGCTTTGCTTGTCAAGTTAGGATTG CTGGAATACCACTAAAGATTTTTGACTTGTGAATAAATGAGCTGTCATCGCAAAAAGGCGATTTGAGAAATGTGGGCTTCAGTATTAATT GCCATTTTGCTGACACCCAGTGTACCTACCTACCTGAGAAATTTATTTTGTCCATCATGTATTTCTCAAAGCAAAAGGTGGTTTTCAAGT ATAATGTCGTTTTCAACATGCTTATTACTTAGTTTTACGTCAGCTCATTTCATCATCATTGATAACTTGTGAAATACTTATCTCCATCCT ATGGAATAGGGGAGACGGGTTTAGACAGGTTCAATTAGCTCAAGTCTACACAGCTGAAGTAGCAGAGAAAGTGGGATCTAGATGGTCTGA TCCTAGTGATCTACCATATGAAGGACATAGTTTGTGTCCTGGTCCAAGTCAAATATTGACTCCTCACAAACAGTAAGTATGGCAATTTTG TGATGCCTTTGATTCCACTTTACATGGAGTACTATTATTTGTGAAATGTCTTTAAGATTTTTGGTCTTAAATTTTTGAAGACTGCTTTCC CCCTTTATCTCCCAGAAAATTGAGAAGAAGTAAACTCCTGCCCACTAACAATCTCAGTCCGTGAACAAAACCAACATGAACATTCCTAAA CAAGAGTGTGTGTTACTCTAAGAAGAAGGCTATAGAATTTATGGAAATGGCTTATGTAACCTACAAGACTGGAGAACAGAATGTGACTGG CCTTTTCTAATGGTCCTTTAAGATTTAATGATTAAAGCAAGAGTTTTTTATAATTGACTTTGTGGTCTAAATTCTTGATACTGTTTATAA TTCTACAAAGAACAAAAATTGTTATGTACTATAGGCACTTAAGAACCCTGAGGAAAAATAATACAATGTGTGTGTGTGAGAGAGAGAGTG AGTTACTGACATTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAATGTGGAGGGTTGAAATGGTAAGGAATTGGAATCTTTTGTATTTTCG AGCAATAAGAATTCCTATTCTTGTTTCAAATAGAGGTTTGTTAGGAATTACAGTTGTGGGGAGCAAACTTTCTTTTTTGTGCTGTTTTAA TTCAAAATGTATATCCTTAATTGTATATAATATGTAGATAAATATATGAGGGTATTAAGCTACTTTGAATTAAATTTAAGGATATATTTC >68199_68199_2_PPP4R1-VAPA_PPP4R1_chr18_9614223_ENST00000400555_VAPA_chr18_9931806_ENST00000400000_length(amino acids)=240AA_BP=18 MADLSLLQEDLQEDADGCPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQT IFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKL -------------------------------------------------------------- >68199_68199_3_PPP4R1-VAPA_PPP4R1_chr18_9614223_ENST00000400556_VAPA_chr18_9931806_ENST00000340541_length(transcript)=1079nt_BP=126nt CCGGCTCCCCGGCTCGCGCCGCTCCATGTAGCCCCGGCTCCCCGGGCGGCCGCGGAGGAGGGGGCGACCACAAGATGGCGGACCTCTCGC TGCTTCAGGAGGACCTGCAGGAGGACGCAGACGGATGCCCCTTCACAGATGTAGTCACTACAAATCTTAAATTGCGAAATCCATCGGATA GAAAAGTGTGTTTCAAAGTGAAGACTACAGCACCTCGCCGGTACTGTGTGAGGCCCAACAGTGGAATTATTGACCCAGGGTCAACTGTGA CTGTTTCAGTAATGCTACAGCCCTTTGACTATGATCCGAATGAAAAGAGTAAACACAAGTTTATGGTACAGACAATTTTTGCTCCACCAA ACACTTCAGATATGGAAGCTGTGTGGAAAGAGGCAAAACCTGATGAATTAATGGATTCCAAATTGAGATGCGTATTTGAAATGCCCAATG AAAATGATAAATTGGGTATAACTCCACCAGGGAATGCTCCGACTGTCACTTCAATGAGCAGCATCAACAACACAGTTGCAACACCTGCCA GTTATCACACGAAGGATGACCCCAGGGGACTCAGTGTGTTGAAACAGGAGAAACAGAAGAATGATATGGAACCTAGCAAAGCTGTTCCAC TGAATGCATCTAAGCAAGATGGACCTATGCCAAAACCACACAGTGTTTCACTTAATGATACCGAAACAAGGAAACTAATGGAAGAGTGTA AAAGACTTCAGGGAGAAATGATGAAGCTATCAGAAGAAAATCGGCACCTGAGAGATGAAGGTTTAAGGCTCAGAAAGGTAGCACATTCGG ATAAACCTGGATCAACCTCAACTGCATCCTTCAGAGATAATGTCACCAGTCCTCTTCCTTCACTTCTTGTTGTAATTGCAGCCATTTTCA TTGGATTCTTTCTAGGGAAATTCATCTTGTAGAGTGAAGCATGCAGAGTGCTGTTTCTTTTTTTTTTTTTCTCTTGACCAGAAAAAGATT >68199_68199_3_PPP4R1-VAPA_PPP4R1_chr18_9614223_ENST00000400556_VAPA_chr18_9931806_ENST00000340541_length(amino acids)=285AA_BP=18 MADLSLLQEDLQEDADGCPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQT IFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPRGLSVLKQEKQKNDMEP SKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVV -------------------------------------------------------------- >68199_68199_4_PPP4R1-VAPA_PPP4R1_chr18_9614223_ENST00000400556_VAPA_chr18_9931806_ENST00000400000_length(transcript)=6607nt_BP=126nt CCGGCTCCCCGGCTCGCGCCGCTCCATGTAGCCCCGGCTCCCCGGGCGGCCGCGGAGGAGGGGGCGACCACAAGATGGCGGACCTCTCGC TGCTTCAGGAGGACCTGCAGGAGGACGCAGACGGATGCCCCTTCACAGATGTAGTCACTACAAATCTTAAATTGCGAAATCCATCGGATA GAAAAGTGTGTTTCAAAGTGAAGACTACAGCACCTCGCCGGTACTGTGTGAGGCCCAACAGTGGAATTATTGACCCAGGGTCAACTGTGA CTGTTTCAGTAATGCTACAGCCCTTTGACTATGATCCGAATGAAAAGAGTAAACACAAGTTTATGGTACAGACAATTTTTGCTCCACCAA ACACTTCAGATATGGAAGCTGTGTGGAAAGAGGCAAAACCTGATGAATTAATGGATTCCAAATTGAGATGCGTATTTGAAATGCCCAATG AAAATGATAAATTGAATGATATGGAACCTAGCAAAGCTGTTCCACTGAATGCATCTAAGCAAGATGGACCTATGCCAAAACCACACAGTG TTTCACTTAATGATACCGAAACAAGGAAACTAATGGAAGAGTGTAAAAGACTTCAGGGAGAAATGATGAAGCTATCAGAAGAAAATCGGC ACCTGAGAGATGAAGGTTTAAGGCTCAGAAAGGTAGCACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCAGAGATAATGTCA CCAGTCCTCTTCCTTCACTTCTTGTTGTAATTGCAGCCATTTTCATTGGATTCTTTCTAGGGAAATTCATCTTGTAGAGTGAAGCATGCA GAGTGCTGTTTCTTTTTTTTTTTTTCTCTTGACCAGAAAAAGATTTGTTTACCTACCATTTCATTGGTAGTATGGCCCACGGTGACCATT TTTTTGTGTGTACAGCGTCATATAGGCTTTGCCTTTAATGATCTCTTACGGTTAGAAAACACAATAAAAACAAACTGTTCGGCTACTGGA CAGGTTGTATATTACCAGATCATCACTAGCAGATGTCAGTTGCACATTGAGTCCTTTATGAAATTCATAAATAAAGAATTGTTCTTTCTT TGTGGTTTTAATAAGAGTTCAAGAATTGTTCAGAGTCTTGTAAATGTTATTTTAATAATCCCTTTAAATTTTATCTGTTGCTGTTACCTC TTGAAATATGATTTATTTAGATTGCTAATCCCACTCATTCAGGAAATGCCAAGAGGTATTCCTTGGGGAAATGGTGCCTCTTACAGTGTA AATTTTTCCTCCTTTACCTTTGCTAATATCATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGTTGTTGACTGAGTTTTTCATCCTTACA ATCCTGTCCCATGGTATTTAACATAAAAAAAAATAAAACTGTTAACAGATTCTTGCTCGATAGCTTGTTTGTGTCTGTCGTGTTATTAGA GGGAACTCCACTATATATGGTCACTTGAAATTATGATGCAAAGGTTTCTCTTGCATTGAAACCCTCTTGGATATTACAGTATTTTTAATT GAAAGTCCTAATTCTGTTAAGGAAAGGAGTTGATTAAATTTTAAGGTACCACTGGTATTTTGGGAGATTATAATCAGTTTGTTTTCAAGA TAATAGAAAATAAGGTCCATGAGAATAGAAGTTATGTGATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCC ATTCTTAAGTTCTGAGAGTATGTTCTCAAGGAAGATTTAACTCTCTTTGGTTTTAAATTACTTTTTAACCAGCCTAATAAATAAGTCTTA CTACTTTTCATAATATTTCATAATAGTTAAAAGTAGGTGTTTTTTTCGTGCTCAATTTGGCACTCAAAATAATGTTCATTATGGAAGTTT GGTAATACTGAGCAAGCCTGTGGAATTTTCTTTATGAAAAATGATTTTAGCCTTTGCAAATGTTAACCATGTGAAACACATTTTCAGTAT AAGTATGCGTTACAGGGTTTGATACTTTCCTGCACTTAGGTTTGTCCTATTCTTCATTTATTCATACTAGGATAGAAAATTTTGGAATCA GAAAATAGATCCAGTGTTTAGCTACATACAATCTAGTACAAGTGAATTTTTATTCTTAAACATAGGTGTGTTGGCTCTTTTTTTAAAAGA TGCGCTCTACCTGAAAAGGAAATTGGATTTTAGAACTGGATGTGGTGCAGTGAAGTATTTTAGGCCCAGGTCTGTGTACACATTTTATAG AAGAATGAAGTACTCTGAAGTATTTTGGTTGCCTTTTCATTTCAACTGTGTTTTGAATTTGTCAGATCACACATATATTGTGTTATTGGG CGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCAAAAGTTCCTAAAAGGAAACACAAGTAATGCCTATCCATTACTAGCATGCTA TGCTGCATGCTTTACTGCCATTGCTGTATGCTTTACTGTCTTTGTAAAAATCCCCCTCTCCCCTTTTCTGGTAACTGGAAAAGCATGCTA AAAATAGTCTTATATTTTCACCCCATAAATGCAGAATCAGTAATTCCTTGGCTTAAAGCTCTTATATAATCAATATTATTGGTGGTAAAT ACCAAGTTTGGTATCTCATAGCTATCTTTTTTTAAAGAAATTAAGTTCTTGAAAATTTAGCCAAATCCCGTTTTATGGGAATGCTCTTTA GAATTCATTTTGTTCAGCCCCTTTGTTCTATGGTTGAGAAATCTGAGGCCTTACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTA GGTAGAGGCAGAGCTGGAACTAGATATCTGGTCTGTTGACTCTAGCTCAGTGTCTTCTGGTAACTGTTGAAAATTGTCTTAGTTTGAGAG ATGGCTGAAATAATGAACATAAAATGCTATTTATAATAACAAGTATATGTGAAATTTCTTATTGTAAGACTACTACCGGCTTACTGTTGA ATAGTTTGGTTATAGTGTTTAGGCTAGAAATGCCTCCCACATTGGTAATAAACATTACAAAATACAATGTATTTTTAGGTAGGCATTTTA TAAAATGCATTATGCCATGGTTGCTTTTGAGATAGATTGTAGTCTGGGTAGCATCTTTAAAATGTATGTGGGCTTAACTGTTGTTCATAT CAGGAGATGCTCTGATTGTATAGGTGAGACTCTGTTTCTGTTATTTTTAATTGCTGTATGAAATGTGATCAGATTATTTTACTACCAACA GTTATAGTTTGAAAGTCCAACTGTATTAATTGACTGATAATATGATAATATAGAGATTAAATTGTTTGTCTTCATTCCTTATATGTTTAG AAGTTTTTGCTTTGTCTGCCTGCTTACTTGTATATGTAAGCATGAGGGAAATACACTGTTGCTAATACTGAAATTACAATCAAGTAACTA AGGCCTTGAGTTCATATGTGACACTGAATGCACTAGCTTCCTTCGTTCTATAACTAATGTACCTTAACTTCCCCCATTCTTATATTTACA AGAAGCTAAGTCATTATGTTCTGAGTGTGTGGTATGTTCCCTTAAAAAAAAATGACACTTGGAAGAAAAATGTATGAAATTCAGAAATTC CGATCAAAGAAAAGTAATTCTTTCTTTTTTTTTTTGAGACAGAGTCTTGCTTTGTTGCCCAGGCTGGAGGGCAGTGGTGTGATCTCACCT CACTGCAGCTTCCGCCTCCTGGGTTCAAGTGATTCTCATGGCTCAGCCGCCTGAGTAGCTGGGATTACAGGTGTGAGCCAACAAGCCCGG CTAATTTTTGTATTTTTAGTAGAGACAAGGTTTCACCATGTTGGTCAGGCTGGGCTCAAACTCCTGAATCCGCCTGCCTCGGCCTCCCAA AGTGCTGGGATTACAGGTGTGAGCTGCCGCACCCAGCCAAGAAAAATAATACTCTTAAATACTTAGATGTTCACCTAAAGTTGATATTAT TTGGTATGGGAATTACTTTTGAACTGTAATCTTTCAGATTACACCACTTTGAAAACAAGTTTTAACAGTAGGGTAAAAATATAGTTTTTG AGGGTATTCCCAACTTGTGATCTTCTACCACTTTAGAGACATTCAAGTAATAGTTTTCTTAGAGCTTTGCACATTCCTATTCACTGAGAT TTTAAAAATTTCACCTTTATTCGAGGGAAGGATCAATGCTTATTACCATTTGGAAAAACGAAGATCAGAAGGTAAATGATCTTTATTTTC TAGCTTTAAAGGGAAATTAAACCATTCATGAATAAACTTTAAAAATGTGAAGTGTCCTTTTCCTTTTCACAATACAAAAAAAATTTCAAC AGATTGTGTGGTTTGTGCATTTATATCCTGTTAAGCATTAATAGCTAATCACTGGGACTTGAATTCTGATGGCAGATAGTCTCTTGCTTA GTGAGATGGAGTTAACTATTTTTTAGTAGGAAGTGAGAACAGCTGATTTTCATGCCACGTTTCATAGCCCCACTTTTGGTAGACTACCAC CACGCTTCTTCGCGTAAGCAGTGGCATCTTGGGAATGAATGCCCAGCCGCTCGTGGGTTGGTGCAAAGAAGTATAAACATATATCACTAA GGAAAAAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTGGAAAATATAAAAAATTCCAAATTCTGCCTTT CAGCAGCATCAATTGCTAGGAACATTTCATTCATTTCCCTGTAATATTAATGTTCTTTAAGCATAATCACTAATTATAAGTTGTATCCTA TTTTTTTCCAGCTTAATTTCTGTGGTTTATTGAAAACCAAGTATAAATGTGACTAAAAGCATTTTGCTTTGTTTTTATAGTTAACTTTCT TAAGGTTATGGACATTTTATAATGTAACATTTGATTGGCCTGGCCTCTTGACAATTCCCTTCTAGTTATGCATATCCTCCTGTTGCCACA TTTCTTGTTTTAAAACTCAGTTTCTTGTTTTCCAGTTGTTGCTATGTATAACACCCATCTTGAAAGAGAGTATATAGGAAGTTATTCAGA TAACTTTTGTAGTAGTGATATTCAACTATAGCAGTACCTTAACTCATGATGAGCTTAGGAACATAAAAGATAATTGTTGCTTGAATAGCA CCCCCAGAGATACTGACCTAATTGGTCTGGGGTGGAGATCTGGCATGGTAGTTTTTTTCAAGCTCCAATCATCGGCCAGACAGTTGCTTT ATGTAGGTTTTTAAATGCCAAAGGCAGATATGAAGTAGATTTAATTAAGACTTGACTTCAGCAATACAGGGGAACTTAAAATACTTATTT TTCTTTAAACTGCAGGAGTCACTGTTAGGTATTGCTTAAAAAAAATTGCATAAAAGCTTTGCTTGTCAAGTTAGGATTGCTGGAATACCA CTAAAGATTTTTGACTTGTGAATAAATGAGCTGTCATCGCAAAAAGGCGATTTGAGAAATGTGGGCTTCAGTATTAATTGCCATTTTGCT GACACCCAGTGTACCTACCTACCTGAGAAATTTATTTTGTCCATCATGTATTTCTCAAAGCAAAAGGTGGTTTTCAAGTATAATGTCGTT TTCAACATGCTTATTACTTAGTTTTACGTCAGCTCATTTCATCATCATTGATAACTTGTGAAATACTTATCTCCATCCTATGGAATAGGG GAGACGGGTTTAGACAGGTTCAATTAGCTCAAGTCTACACAGCTGAAGTAGCAGAGAAAGTGGGATCTAGATGGTCTGATCCTAGTGATC TACCATATGAAGGACATAGTTTGTGTCCTGGTCCAAGTCAAATATTGACTCCTCACAAACAGTAAGTATGGCAATTTTGTGATGCCTTTG ATTCCACTTTACATGGAGTACTATTATTTGTGAAATGTCTTTAAGATTTTTGGTCTTAAATTTTTGAAGACTGCTTTCCCCCTTTATCTC CCAGAAAATTGAGAAGAAGTAAACTCCTGCCCACTAACAATCTCAGTCCGTGAACAAAACCAACATGAACATTCCTAAACAAGAGTGTGT GTTACTCTAAGAAGAAGGCTATAGAATTTATGGAAATGGCTTATGTAACCTACAAGACTGGAGAACAGAATGTGACTGGCCTTTTCTAAT GGTCCTTTAAGATTTAATGATTAAAGCAAGAGTTTTTTATAATTGACTTTGTGGTCTAAATTCTTGATACTGTTTATAATTCTACAAAGA ACAAAAATTGTTATGTACTATAGGCACTTAAGAACCCTGAGGAAAAATAATACAATGTGTGTGTGTGAGAGAGAGAGTGAGTTACTGACA TTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAATGTGGAGGGTTGAAATGGTAAGGAATTGGAATCTTTTGTATTTTCGAGCAATAAGAA TTCCTATTCTTGTTTCAAATAGAGGTTTGTTAGGAATTACAGTTGTGGGGAGCAAACTTTCTTTTTTGTGCTGTTTTAATTCAAAATGTA TATCCTTAATTGTATATAATATGTAGATAAATATATGAGGGTATTAAGCTACTTTGAATTAAATTTAAGGATATATTTCACATGAAAACA >68199_68199_4_PPP4R1-VAPA_PPP4R1_chr18_9614223_ENST00000400556_VAPA_chr18_9931806_ENST00000400000_length(amino acids)=240AA_BP=18 MADLSLLQEDLQEDADGCPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQT IFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKL -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for PPP4R1-VAPA |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for PPP4R1-VAPA |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for PPP4R1-VAPA |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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