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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:PRMT2-PRMT2 (FusionGDB2 ID:68923)

Fusion Gene Summary for PRMT2-PRMT2

check button Fusion gene summary
Fusion gene informationFusion gene name: PRMT2-PRMT2
Fusion gene ID: 68923
HgeneTgene
Gene symbol

PRMT2

PRMT2

Gene ID

3275

3275

Gene nameprotein arginine methyltransferase 2protein arginine methyltransferase 2
SynonymsHRMT1L1HRMT1L1
Cytomap

21q22.3

21q22.3

Type of geneprotein-codingprotein-coding
Descriptionprotein arginine N-methyltransferase 2HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 1HMT1 hnRNP methyltransferase-like 1PRMT2 alphaPRMT2 betaPRMT2 gammahistone-arginine N-methyltransferase PRMT2protein arginine N-methyltransferase 2HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 1HMT1 hnRNP methyltransferase-like 1PRMT2 alphaPRMT2 betaPRMT2 gammahistone-arginine N-methyltransferase PRMT2
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000491389, ENST00000291705, 
ENST00000334494, ENST00000355680, 
ENST00000397628, ENST00000397637, 
ENST00000397638, ENST00000440086, 
ENST00000451211, ENST00000458387, 
ENST00000355680, ENST00000397637, 
ENST00000291705, ENST00000334494, 
ENST00000397628, ENST00000397638, 
ENST00000440086, ENST00000451211, 
ENST00000458387, ENST00000491389, 
Fusion gene scores* DoF score11 X 9 X 7=6939 X 8 X 4=288
# samples 129
** MAII scorelog2(12/693*10)=-2.5298209465287
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/288*10)=-1.67807190511264
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PRMT2 [Title/Abstract] AND PRMT2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPRMT2(48069583)-PRMT2(48056396), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePRMT2

GO:0016571

histone methylation

19405910

HgenePRMT2

GO:0032088

negative regulation of NF-kappaB transcription factor activity

16648481

HgenePRMT2

GO:0045892

negative regulation of transcription, DNA-templated

16648481

HgenePRMT2

GO:0045893

positive regulation of transcription, DNA-templated

12039952

HgenePRMT2

GO:0060765

regulation of androgen receptor signaling pathway

17587566

TgenePRMT2

GO:0016571

histone methylation

19405910

TgenePRMT2

GO:0032088

negative regulation of NF-kappaB transcription factor activity

16648481

TgenePRMT2

GO:0045892

negative regulation of transcription, DNA-templated

16648481

TgenePRMT2

GO:0045893

positive regulation of transcription, DNA-templated

12039952

TgenePRMT2

GO:0060765

regulation of androgen receptor signaling pathway

17587566


check buttonFusion gene breakpoints across PRMT2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across PRMT2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/AAA348224PRMT2chr21

48069583

+PRMT2chr21

48056396

+


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Fusion Gene ORF analysis for PRMT2-PRMT2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-5UTRENST00000491389ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
3UTR-5UTRENST00000491389ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
3UTR-intronENST00000491389ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
3UTR-intronENST00000491389ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
3UTR-intronENST00000491389ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
3UTR-intronENST00000491389ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
3UTR-intronENST00000491389ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
3UTR-intronENST00000491389ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
3UTR-intronENST00000491389ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
3UTR-intronENST00000491389ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000291705ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000291705ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000334494ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000334494ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000355680ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000355680ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000397628ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000397628ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000397637ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000397637ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000397638ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000397638ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000440086ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000440086ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000451211ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000451211ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000458387ENST00000355680PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-5UTRENST00000458387ENST00000397637PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000291705ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000291705ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000291705ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000291705ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000291705ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000291705ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000291705ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000291705ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000334494ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000334494ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000334494ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000334494ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000334494ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000334494ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000334494ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000334494ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000355680ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000355680ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000355680ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000355680ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000355680ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000355680ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000355680ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000355680ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397628ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397628ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397628ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397628ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397628ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397628ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397628ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397628ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397637ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397637ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397637ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397637ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397637ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397637ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397637ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397637ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397638ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397638ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397638ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397638ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397638ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397638ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397638ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000397638ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000440086ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000440086ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000440086ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000440086ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000440086ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000440086ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000440086ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000440086ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000451211ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000451211ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000451211ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000451211ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000451211ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000451211ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000451211ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000451211ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000458387ENST00000291705PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000458387ENST00000334494PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000458387ENST00000397628PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000458387ENST00000397638PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000458387ENST00000440086PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000458387ENST00000451211PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000458387ENST00000458387PRMT2chr21

48069583

+PRMT2chr21

48056396

+
5CDS-intronENST00000458387ENST00000491389PRMT2chr21

48069583

+PRMT2chr21

48056396

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for PRMT2-PRMT2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for PRMT2-PRMT2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:48069583/:48056396)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for PRMT2-PRMT2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for PRMT2-PRMT2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for PRMT2-PRMT2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for PRMT2-PRMT2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource