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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:PTK2-PHF20L1 (FusionGDB2 ID:70048) |
Fusion Gene Summary for PTK2-PHF20L1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PTK2-PHF20L1 | Fusion gene ID: 70048 | Hgene | Tgene | Gene symbol | PTK2 | PHF20L1 | Gene ID | 5747 | 51105 |
Gene name | protein tyrosine kinase 2 | PHD finger protein 20 like 1 | |
Synonyms | FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK | CGI-72|TDRD20B|URLC1 | |
Cytomap | 8q24.3 | 8q24.22 | |
Type of gene | protein-coding | protein-coding | |
Description | focal adhesion kinase 1FADK 1FAK-related non-kinase polypeptidePTK2 protein tyrosine kinase 2focal adhesion kinase isoform FAK-Del33focal adhesion kinase-related nonkinaseprotein phosphatase 1 regulatory subunit 71 | PHD finger protein 20-like protein 1tudor domain containing 20Btudor domain-containing protein PHF20L1up-regulated in lung cancer 1 | |
Modification date | 20200327 | 20200320 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000340930, ENST00000395218, ENST00000517887, ENST00000519419, ENST00000521059, ENST00000522684, ENST00000535192, ENST00000430260, ENST00000519465, ENST00000538769, ENST00000517712, ENST00000519635, ENST00000519881, ENST00000520151, ENST00000520892, ENST00000522950, | ENST00000220847, ENST00000395390, ENST00000337920, ENST00000395376, ENST00000395379, ENST00000395386, | |
Fusion gene scores | * DoF score | 39 X 32 X 15=18720 | 8 X 9 X 7=504 |
# samples | 57 | 10 | |
** MAII score | log2(57/18720*10)=-5.03747470541866 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/504*10)=-2.33342373372519 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PTK2 [Title/Abstract] AND PHF20L1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | PTK2(141684396)-PHF20L1(133858025), # samples:1 PTK2(141874410)-PHF20L1(133836248), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | PTK2-PHF20L1 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. PTK2-PHF20L1 seems lost the major protein functional domain in Hgene partner, which is a kinase due to the frame-shifted ORF. PTK2-PHF20L1 seems lost the major protein functional domain in Tgene partner, which is a epigenetic factor due to the frame-shifted ORF. PTK2-PHF20L1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PTK2 | GO:0007179 | transforming growth factor beta receptor signaling pathway | 24036928 |
Hgene | PTK2 | GO:0007229 | integrin-mediated signaling pathway | 24036928 |
Hgene | PTK2 | GO:0010763 | positive regulation of fibroblast migration | 26763945 |
Hgene | PTK2 | GO:0018108 | peptidyl-tyrosine phosphorylation | 10655584|11331870 |
Hgene | PTK2 | GO:0022408 | negative regulation of cell-cell adhesion | 21703394 |
Hgene | PTK2 | GO:0030335 | positive regulation of cell migration | 11331870|21703394 |
Hgene | PTK2 | GO:0033628 | regulation of cell adhesion mediated by integrin | 10655584 |
Hgene | PTK2 | GO:0046777 | protein autophosphorylation | 10655584|11331870 |
Hgene | PTK2 | GO:0048013 | ephrin receptor signaling pathway | 10655584 |
Hgene | PTK2 | GO:0060396 | growth hormone receptor signaling pathway | 10925297 |
Hgene | PTK2 | GO:0090303 | positive regulation of wound healing | 26763945 |
Fusion gene breakpoints across PTK2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across PHF20L1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | OV | TCGA-61-2016 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
ChimerDB4 | STAD | TCGA-BR-8678 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
Top |
Fusion Gene ORF analysis for PTK2-PHF20L1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000340930 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000340930 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000395218 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000395218 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000517887 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000517887 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000519419 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000519419 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000521059 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000521059 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000522684 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000522684 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000535192 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-5UTR | ENST00000535192 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000340930 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000340930 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000340930 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000340930 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000340930 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000340930 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000340930 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000340930 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000395218 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000395218 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000395218 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000395218 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000395218 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000395218 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000395218 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000395218 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000430260 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000430260 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000430260 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000430260 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000430260 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000517887 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000517887 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000517887 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000517887 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000517887 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000517887 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000517887 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000517887 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519419 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519419 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519419 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000519419 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519419 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000519419 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519419 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000519419 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519465 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519465 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519465 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519465 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000519465 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000521059 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000521059 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000521059 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000521059 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000521059 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000521059 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000521059 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000521059 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000522684 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000522684 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000522684 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000522684 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000522684 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000522684 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000522684 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000522684 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000535192 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000535192 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000535192 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000535192 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000535192 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000535192 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000535192 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
5CDS-intron | ENST00000535192 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000538769 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000538769 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000538769 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000538769 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
5CDS-intron | ENST00000538769 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
Frame-shift | ENST00000340930 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
Frame-shift | ENST00000395218 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
Frame-shift | ENST00000517887 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
Frame-shift | ENST00000517887 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
Frame-shift | ENST00000519419 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
Frame-shift | ENST00000519465 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
Frame-shift | ENST00000521059 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
Frame-shift | ENST00000521059 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
Frame-shift | ENST00000522684 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
Frame-shift | ENST00000535192 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
Frame-shift | ENST00000535192 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
Frame-shift | ENST00000538769 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
In-frame | ENST00000340930 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
In-frame | ENST00000395218 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
In-frame | ENST00000430260 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
In-frame | ENST00000519419 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
In-frame | ENST00000522684 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-3CDS | ENST00000430260 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-3CDS | ENST00000517712 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-3CDS | ENST00000517712 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-3CDS | ENST00000519465 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-3CDS | ENST00000519635 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-3CDS | ENST00000519635 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-3CDS | ENST00000519881 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-3CDS | ENST00000519881 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-3CDS | ENST00000520151 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-3CDS | ENST00000520151 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-3CDS | ENST00000520892 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-3CDS | ENST00000520892 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-3CDS | ENST00000522950 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-3CDS | ENST00000522950 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-3CDS | ENST00000538769 | ENST00000395386 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000430260 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000430260 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000517712 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000517712 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000519465 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000519465 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000519635 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000519635 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000519881 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000519881 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000520151 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000520151 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000520892 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000520892 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000522950 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000522950 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000538769 | ENST00000220847 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-5UTR | ENST00000538769 | ENST00000395390 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000430260 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000430260 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000430260 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000517712 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000517712 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000517712 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000517712 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000517712 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000517712 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000517712 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000517712 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519465 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000519465 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000519465 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000519635 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519635 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519635 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000519635 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519635 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000519635 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519635 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000519635 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519881 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519881 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519881 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000519881 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519881 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000519881 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000519881 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000519881 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520151 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520151 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520151 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000520151 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520151 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000520151 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520151 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000520151 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520892 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520892 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520892 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000520892 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520892 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000520892 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000520892 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000520892 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000522950 | ENST00000220847 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000522950 | ENST00000337920 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000522950 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000522950 | ENST00000395376 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000522950 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000522950 | ENST00000395379 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000522950 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000522950 | ENST00000395390 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + |
intron-intron | ENST00000538769 | ENST00000337920 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000538769 | ENST00000395376 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
intron-intron | ENST00000538769 | ENST00000395379 | PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000522684 | PTK2 | chr8 | 141684396 | - | ENST00000395386 | PHF20L1 | chr8 | 133858025 | + | 5966 | 2939 | 230 | 3022 | 930 |
ENST00000395218 | PTK2 | chr8 | 141684396 | - | ENST00000395386 | PHF20L1 | chr8 | 133858025 | + | 5996 | 2969 | 230 | 3052 | 940 |
ENST00000340930 | PTK2 | chr8 | 141684396 | - | ENST00000395386 | PHF20L1 | chr8 | 133858025 | + | 5921 | 2894 | 155 | 2977 | 940 |
ENST00000519419 | PTK2 | chr8 | 141684396 | - | ENST00000395386 | PHF20L1 | chr8 | 133858025 | + | 6180 | 3153 | 270 | 3236 | 988 |
ENST00000430260 | PTK2 | chr8 | 141684396 | - | ENST00000395386 | PHF20L1 | chr8 | 133858025 | + | 4124 | 1097 | 425 | 1180 | 251 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000522684 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + | 0.000193964 | 0.9998061 |
ENST00000395218 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + | 0.000186589 | 0.9998134 |
ENST00000340930 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + | 0.0001892 | 0.9998109 |
ENST00000519419 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + | 0.000180579 | 0.99981946 |
ENST00000430260 | ENST00000395386 | PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + | 0.002546347 | 0.99745363 |
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Fusion Genomic Features for PTK2-PHF20L1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + | 0.000175892 | 0.9998241 |
PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + | 5.95E-05 | 0.9999405 |
PTK2 | chr8 | 141874410 | - | PHF20L1 | chr8 | 133836248 | + | 0.000175892 | 0.9998241 |
PTK2 | chr8 | 141684396 | - | PHF20L1 | chr8 | 133858025 | + | 5.95E-05 | 0.9999405 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for PTK2-PHF20L1 |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr8:141684396/chr8:133858025) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000340930 | - | 29 | 33 | 712_733 | 913 | 1066.0 | Compositional bias | Note=Pro-rich |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000340930 | - | 29 | 33 | 863_913 | 913 | 1066.0 | Compositional bias | Note=Pro-rich |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000521059 | - | 29 | 32 | 712_733 | 903 | 1053.0 | Compositional bias | Note=Pro-rich |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000522684 | - | 29 | 32 | 712_733 | 903 | 1053.0 | Compositional bias | Note=Pro-rich |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000340930 | - | 29 | 33 | 35_355 | 913 | 1066.0 | Domain | FERM |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000340930 | - | 29 | 33 | 422_680 | 913 | 1066.0 | Domain | Protein kinase |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000521059 | - | 29 | 32 | 35_355 | 903 | 1053.0 | Domain | FERM |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000521059 | - | 29 | 32 | 422_680 | 903 | 1053.0 | Domain | Protein kinase |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000522684 | - | 29 | 32 | 35_355 | 903 | 1053.0 | Domain | FERM |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000522684 | - | 29 | 32 | 422_680 | 903 | 1053.0 | Domain | Protein kinase |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000340930 | - | 29 | 33 | 428_434 | 913 | 1066.0 | Nucleotide binding | ATP |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000340930 | - | 29 | 33 | 500_502 | 913 | 1066.0 | Nucleotide binding | ATP |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000521059 | - | 29 | 32 | 428_434 | 903 | 1053.0 | Nucleotide binding | ATP |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000521059 | - | 29 | 32 | 500_502 | 903 | 1053.0 | Nucleotide binding | ATP |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000522684 | - | 29 | 32 | 428_434 | 903 | 1053.0 | Nucleotide binding | ATP |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000522684 | - | 29 | 32 | 500_502 | 903 | 1053.0 | Nucleotide binding | ATP |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000220847 | 18 | 20 | 530_579 | 357 | 405.0 | Compositional bias | Note=Lys-rich | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000337920 | 0 | 8 | 530_579 | 0 | 286.0 | Compositional bias | Note=Lys-rich | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000337920 | 0 | 8 | 11_71 | 0 | 286.0 | Domain | Note=Tudor 1 | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000337920 | 0 | 8 | 85_141 | 0 | 286.0 | Domain | Note=Tudor 2 | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000220847 | 18 | 20 | 681_729 | 357 | 405.0 | Zinc finger | Note=PHD-type | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000337920 | 0 | 8 | 681_729 | 0 | 286.0 | Zinc finger | Note=PHD-type |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000521059 | - | 29 | 32 | 863_913 | 903 | 1053.0 | Compositional bias | Note=Pro-rich |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000522684 | - | 29 | 32 | 863_913 | 903 | 1053.0 | Compositional bias | Note=Pro-rich |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000395386 | 19 | 21 | 530_579 | 970 | 1018.0 | Compositional bias | Note=Lys-rich | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000220847 | 18 | 20 | 11_71 | 357 | 405.0 | Domain | Note=Tudor 1 | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000220847 | 18 | 20 | 85_141 | 357 | 405.0 | Domain | Note=Tudor 2 | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000395386 | 19 | 21 | 11_71 | 970 | 1018.0 | Domain | Note=Tudor 1 | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000395386 | 19 | 21 | 85_141 | 970 | 1018.0 | Domain | Note=Tudor 2 | |
Tgene | PHF20L1 | chr8:141684396 | chr8:133858025 | ENST00000395386 | 19 | 21 | 681_729 | 970 | 1018.0 | Zinc finger | Note=PHD-type |
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Fusion Gene Sequence for PTK2-PHF20L1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>70048_70048_1_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000340930_PHF20L1_chr8_133858025_ENST00000395386_length(transcript)=5921nt_BP=2894nt TGCCTTCGCTTCACGGCGCCGAGCCGCGGTCCGAGCAGAACTGGGGCTCCCTTGCATCTTCCAGTTACAAATTCAGTGCCTTCTGCAGTT TCCCCAGAGCTCCTCAAGAATAACGGAAGGGAGAATATGACAGATACCTAGCATCTAGCAAAATAATGGCAGCTGCTTACCTTGACCCCA ACTTGAATCACACACCAAATTCGAGTACTAAGACTCACCTGGGTACTGGTATGGAACGTTCTCCTGGTGCAATGGAGCGAGTATTAAAGG TCTTTCATTATTTTGAAAGCAATAGTGAGCCAACCACCTGGGCCAGTATTATCAGGCATGGAGATGCTACTGATGTCAGGGGCATCATTC AGAAGATAGTGGACAGTCACAAAGTAAAGCATGTGGCCTGCTATGGATTCCGCCTCAGTCACCTGCGGTCAGAGGAGGTTCACTGGCTTC ACGTGGATATGGGCGTCTCCAGTGTGAGGGAGAAGTATGAGCTTGCTCACCCACCAGAGGAGTGGAAATATGAATTGAGAATTCGTTATT TGCCAAAAGGATTTCTAAACCAGTTTACTGAAGATAAGCCAACTTTGAATTTCTTCTATCAACAGGTGAAGAGCGATTATATGTTAGAGA TAGCTGATCAAGTGGACCAGGAAATTGCTTTGAAGTTGGGTTGTCTAGAAATACGGCGATCATACTGGGAGATGCGGGGCAATGCACTAG AAAAGAAGTCTAACTATGAAGTATTAGAAAAAGATGTTGGTTTAAAGCGATTTTTTCCTAAGAGTTTACTGGATTCTGTCAAGGCCAAAA CACTAAGAAAACTGATCCAACAAACATTTAGACAATTTGCCAACCTTAATAGAGAAGAAAGTATTCTGAAATTCTTTGAGATCCTGTCTC CAGTCTACAGATTTGATAAGGAATGCTTCAAGTGTGCTCTTGGTTCAAGCTGGATTATTTCAGTGGAACTGGCAATCGGCCCAGAAGAAG GAATCAGTTACCTAACGGACAAGGGCTGCAATCCCACACATCTTGCTGACTTCACTCAAGTGCAAACCATTCAGTATTCAAACAGTGAAG ACAAGGACAGAAAAGGAATGCTACAACTAAAAATAGCAGGTGCACCCGAGCCTCTGACAGTGACGGCACCATCCCTAACCATTGCGGAGA ATATGGCTGACCTAATAGATGGGTACTGCCGGCTGGTGAATGGAACCTCGCAGTCATTTATCATCAGACCTCAGAAAGAAGGTGAACGGG CTTTGCCATCAATACCAAAGTTGGCCAACAGCGAAAAGCAAGGCATGCGGACACACGCCGTCTCTGTGTCAGAAACAGATGATTATGCTG AGATTATAGATGAAGAAGATACTTACACCATGCCCTCAACCAGGGATTATGAGATTCAAAGAGAAAGAATAGAACTTGGACGATGTATTG GAGAAGGCCAATTTGGAGATGTACATCAAGGCATTTATATGAGTCCAGAGAATCCAGCTTTGGCGGTTGCAATTAAAACATGTAAAAACT GTACTTCGGACAGCGTGAGAGAGAAATTTCTTCAAGAAGCCTTAACAATGCGTCAGTTTGACCATCCTCATATTGTGAAGCTGATTGGAG TCATCACAGAGAATCCTGTCTGGATAATCATGGAGCTGTGCACACTTGGAGAGCTGAGGTCATTTTTGCAAGTAAGGAAATACAGTTTGG ATCTAGCATCTTTGATCCTGTATGCCTATCAGCTTAGTACAGCTCTTGCATATCTAGAGAGCAAAAGATTTGTACACAGGGACATTGCTG CTCGGAATGTTCTGGTGTCCTCAAATGATTGTGTAAAATTAGGAGACTTTGGATTATCCCGATATATGGAAGATAGTACTTACTACAAAG CTTCCAAAGGAAAATTGCCTATTAAATGGATGGCTCCAGAGTCAATCAATTTTCGACGTTTTACCTCAGCTAGTGACGTATGGATGTTTG GTGTGTGTATGTGGGAGATACTGATGCATGGTGTGAAGCCTTTTCAAGGAGTGAAGAACAATGATGTAATCGGTCGAATTGAAAATGGGG AAAGATTACCAATGCCTCCAAATTGTCCTCCTACCCTCTACAGCCTTATGACGAAATGCTGGGCCTATGACCCCAGCAGGCGGCCCAGGT TTACTGAACTTAAAGCTCAGCTCAGCACAATCCTGGAGGAAGAGAAGGCTCAGCAAGAAGAGCGCATGAGGATGGAGTCCAGAAGACAGG CCACAGTGTCCTGGGACTCCGGAGGGTCTGATGAAGCACCGCCCAAGCCCAGCAGACCGGGTTATCCCAGTCCGAGGTCCAGCGAAGGAT TTTATCCCAGCCCACAGCACATGGTACAAACCAATCATTACCAGGTTTCTGGCTACCCTGGTTCACATGGAATCACAGCCATGGCTGGCA GCATCTATCCAGGTCAGGCATCTCTTTTGGACCAAACAGATTCATGGAATCATAGACCTCAGGAGATAGCAATGTGGCAGCCCAATGTGG AGGACTCTACAGTATTGGACCTGCGAGGGATTGGGCAAGTGTTGCCAACCCATCTGATGGAAGAGCGTCTAATCCGACAGCAACAGGAAA TGGAAGAAGATCAGCGCTGGCTGGAAAAAGAGGAAAGATTTCTGAAACCTGATGTGAGACTCTCTCGAGGCAGTATTGACAGGGAGGATG GAAGTCTTCAGGGTCCGATTGGAAACCAACATATATATCAGCCTGTGGGTAAACCAGGTAAAGAAGAAAAGAATTGGGCGGAAAGAAATC CTGCAGCTCCACCAAAGAAACCGCCTCGCCCTGGAGCTCCCGGTCATCTGGGAAGCCTTGCCAGCCTCAGCAGCCCTGCTGACAGCTACA ACGAGGGTGTCAAGTTCTGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGCCACCAGATCCTCTTGCAAGATTGCCCCAACTTAAACG CCACATAAAACAGCTCCTAATTGACATGGGCAAAGTACAGCAGATAGCAACTCTTTGCTCTGTATGACAACAGTGAACACTTAATGAAAG AATGTGGCTTTCTTCAGTCAAAGCATTTTTATTATCCACGTGATGGCTAAGTGGATAATTTAAAAGCTTAGTAATGTCTGGTCATTCACT GATTTGTGATGTCAATAGGATGGCACCTTGGAAAGAAAAATGAAGAACAACTTTATCAAGGAAGCTAGTATTTAAAAACAAATTCATGAG CAAGCTGCAAATGAGAATGTGTTATATGCCAAGGAACAATGAAGTAGAATATAATGTATACTAAGGGATTTCAAGTTCTCAGAATTTTTG AGTAGTTGCTTACGTGAAGCTCAAGATACCTGTAGAAAGAAATATGGTATATTTGTATAGTTTTTAATAGAAAGATCTATGTTTATAAAC CAGCACTTGGCCAAAAACAAAATTGTAAAGGAAATTTAAATTCTGGAGAATTCTACAGGGTTGCTCTAAGAACTGTCTTCTCAGCAGTTG ATCCAGCTGTACGGAAATTTAGGGTATTTAAACTTTTAAAGGATCATGAGCTGTTTCTTGGGCGATGAATGTTCTCAATCAGAAAACTGA CAGTAGAAATCTCACTTCTGGGGAAAACAGTTGTGGAATTCTTACTTCATTATGAATGTATTTAAAAAACAAACACCAAATAATTGGAAT ATATTGCAGGCATTAAGCTCATTAAAAACAAACTGGCTTGCAGAAGGGTCCGATGTGCCAAGTGATCATGATTCTGCTGGAAAGAGGATT TTAAATATTGTGGGAGTTCTCCCACCCTAAGTCTTACATAATGCCACCAGTCCATCCAAAACCTATATATCACCTATACTATATATATCA TATATATAGTTGAATGGCAGTATTCAGGCTCAACGTACAGTTTGATCCTGAGTATGCTTGGTGTTTGCCTTCAGAAAAAAAAAAATACAT TGTAAATAACCTCAGCTGGGATGAGGAGTGACAGAATATCAAAATAATTTGTGGCTGTGGATTTTTTTAACTGCTAGTAGTGGAATACTG GAAAAGCTTCATTTCTGAAGATGAATTTTATTTTTAAAAAATACATGCACACTCAAAACTTTTAGCTTTGATCACAAGTGGACAAATTTC TGAAACCAAAGGCAACTAAGTTGCTGTGTTAGCTCTTGCTGGATTTTGAGCCTAGGTCCTACTGTCTGCCAGTACTCATGTGAGTTGTAT GTGCCCCCAGTGCTACATACGCAGGTATGCGTAAGTGTGTATGCTTGTTTTAAACAAACACTCAACGTACATATGTACATAATCTACACA TATTTATATCACATATCTAGTTTTATTACTATAGACTATACGAATTGGTGGTTAACATGAAATGTTACCTTTTAACAGACTGTTTTTAAA AATTAAAAATGTATGTATAGGTTTTGAAATTTTTTTAAAAGGGGAGAAAGACTGTTAAGAGGAGGCTATTTGATGACATAACACTTGAAT ATTTTATGCCTCATTCTGTTTATCAGTTCTCGCAATCTGTATAAATGCATTTTAGAACTGATAGACAGTAAACTTGAATTTATCTTTGAT AAGAATACATGCCACTGTACATTCAGATATTATTTAAATTTGCAAACACATTGTTCTATATGTAAGGGTACTGTATGTAAAACTCTGTAT TAAAACTATTCCACATATCCTAAAATTTCAGCTTGCCTTTTTGCGGCCTTATATTTTGATGTAAAGATTAAAAGAATGTGCAAAACAGTC AGAAATTTTTATTGCCTTTTGAGATTCTCCAACTTGACAAATGTGCCAAAGATCAACAGACAGAAAATATCATCCTGTGTATTTACTTGT CATACTTTAACTTTGTGAAAGATCTTACTGATAAATGAAAAGCTTTAGCAGAGGTGGTATTGTGGGGTAATTGCTTAAATTTACATATCA AAGTAAAAAAGTAGTGCCTGTATTCCATGTGTGGAGTAAATTTGCTAATGTCTATATTTTATGATTGATACTATTATTTTTCCTTTGCAT TTTAAAATAGTGGCTCTAATATTTTCCCTGTCATGGCTACATTCTAGACATTGAATTTATATCTTCTTTTTTTCAGATACGGAGCAAATA GCATCCTTAACCTATGAATAATGGTGTTGCCTAGATTCTTGTCACACACACAGAAGACCCTTTGTACCTAGTAACATTCATCCTCTTGAT TCCTGGTGAACACGGTTAAATTCATGCACATTTGTTCTTGTAGTTTCTAAAAATTAGATCAATTTATTTGTTAGCCAGCAAATTGAAAAT TCCATTATTAGATTAATGAAATTTTTGCTCTGCTTATATGTATACGAACTGGAAATCTGAATTTTTAAATTTAGATCTTTAAATCAAATT ATTTTTATGCATATTTTCATTTAATATAGAGTATACCAATCGATTGAAGCCTTTCACAAGTAGTGCGCTGAGCTTTTCTTATTGAAGAGA GTGAATTAGTTTCTGAGAAGTCAGTCTATTGTGAAAAGTTTCAGATGAGATTATTTTCTTTTAGTCTTTTTAAATATCACTATATGTATT TAAATAGAAGCAATAAACTAGAGAGAGTGTTTCTTGAAAAGACAATGTTTTATTTGCCACCAGGCAGAACAGAATGAGCATTGGTAGAGA AGGCTCCCTCTTGGTATGTTACTGATAAACTTGTACTTCCTCATACTTGTTTGTGGTTCTACTGACTTATTTCCAAACTTAAGAGTAATG TACTTCGAAAACAACTTGGTTATTCTTTAAATTTCAGGTAAAACCCCTTTTCCTAACACTCATCTTATTTCCACTGTCTTATTTCCTCTC >70048_70048_1_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000340930_PHF20L1_chr8_133858025_ENST00000395386_length(amino acids)=940AA_BP=913 MAAAYLDPNLNHTPNSSTKTHLGTGMERSPGAMERVLKVFHYFESNSEPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHL RSEEVHWLHVDMGVSSVREKYELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSY WEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISV ELAIGPEEGISYLTDKGCNPTHLADFTQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGTSQSFII RPQKEGERALPSIPKLANSEKQGMRTHAVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALA VAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND VIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKAQQEERMRMESRRQATVSWDSGGSDEAPPKPSRPGY PSPRSSEGFYPSPQHMVQTNHYQVSGYPGSHGITAMAGSIYPGQASLLDQTDSWNHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEE RLIRQQQEMEEDQRWLEKEERFLKPDVRLSRGSIDREDGSLQGPIGNQHIYQPVGKPGKEEKNWAERNPAAPPKKPPRPGAPGHLGSLAS -------------------------------------------------------------- >70048_70048_2_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000395218_PHF20L1_chr8_133858025_ENST00000395386_length(transcript)=5996nt_BP=2969nt GACCACTGTGAGCCCGCGGCGTGAGGCGTGGGAGGAAGCGCGGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACG GCGCCGAGCCGCGGTCCGAGCAGAACTGGGGCTCCCTTGCATCTTCCAGTTACAAATTCAGTGCCTTCTGCAGTTTCCCCAGAGCTCCTC AAGAATAACGGAAGGGAGAATATGACAGATACCTAGCATCTAGCAAAATAATGGCAGCTGCTTACCTTGACCCCAACTTGAATCACACAC CAAATTCGAGTACTAAGACTCACCTGGGTACTGGTATGGAACGTTCTCCTGGTGCAATGGAGCGAGTATTAAAGGTCTTTCATTATTTTG AAAGCAATAGTGAGCCAACCACCTGGGCCAGTATTATCAGGCATGGAGATGCTACTGATGTCAGGGGCATCATTCAGAAGATAGTGGACA GTCACAAAGTAAAGCATGTGGCCTGCTATGGATTCCGCCTCAGTCACCTGCGGTCAGAGGAGGTTCACTGGCTTCACGTGGATATGGGCG TCTCCAGTGTGAGGGAGAAGTATGAGCTTGCTCACCCACCAGAGGAGTGGAAATATGAATTGAGAATTCGTTATTTGCCAAAAGGATTTC TAAACCAGTTTACTGAAGATAAGCCAACTTTGAATTTCTTCTATCAACAGGTGAAGAGCGATTATATGTTAGAGATAGCTGATCAAGTGG ACCAGGAAATTGCTTTGAAGTTGGGTTGTCTAGAAATACGGCGATCATACTGGGAGATGCGGGGCAATGCACTAGAAAAGAAGTCTAACT ATGAAGTATTAGAAAAAGATGTTGGTTTAAAGCGATTTTTTCCTAAGAGTTTACTGGATTCTGTCAAGGCCAAAACACTAAGAAAACTGA TCCAACAAACATTTAGACAATTTGCCAACCTTAATAGAGAAGAAAGTATTCTGAAATTCTTTGAGATCCTGTCTCCAGTCTACAGATTTG ATAAGGAATGCTTCAAGTGTGCTCTTGGTTCAAGCTGGATTATTTCAGTGGAACTGGCAATCGGCCCAGAAGAAGGAATCAGTTACCTAA CGGACAAGGGCTGCAATCCCACACATCTTGCTGACTTCACTCAAGTGCAAACCATTCAGTATTCAAACAGTGAAGACAAGGACAGAAAAG GAATGCTACAACTAAAAATAGCAGGTGCACCCGAGCCTCTGACAGTGACGGCACCATCCCTAACCATTGCGGAGAATATGGCTGACCTAA TAGATGGGTACTGCCGGCTGGTGAATGGAACCTCGCAGTCATTTATCATCAGACCTCAGAAAGAAGGTGAACGGGCTTTGCCATCAATAC CAAAGTTGGCCAACAGCGAAAAGCAAGGCATGCGGACACACGCCGTCTCTGTGTCAGAAACAGATGATTATGCTGAGATTATAGATGAAG AAGATACTTACACCATGCCCTCAACCAGGGATTATGAGATTCAAAGAGAAAGAATAGAACTTGGACGATGTATTGGAGAAGGCCAATTTG GAGATGTACATCAAGGCATTTATATGAGTCCAGAGAATCCAGCTTTGGCGGTTGCAATTAAAACATGTAAAAACTGTACTTCGGACAGCG TGAGAGAGAAATTTCTTCAAGAAGCCTTAACAATGCGTCAGTTTGACCATCCTCATATTGTGAAGCTGATTGGAGTCATCACAGAGAATC CTGTCTGGATAATCATGGAGCTGTGCACACTTGGAGAGCTGAGGTCATTTTTGCAAGTAAGGAAATACAGTTTGGATCTAGCATCTTTGA TCCTGTATGCCTATCAGCTTAGTACAGCTCTTGCATATCTAGAGAGCAAAAGATTTGTACACAGGGACATTGCTGCTCGGAATGTTCTGG TGTCCTCAAATGATTGTGTAAAATTAGGAGACTTTGGATTATCCCGATATATGGAAGATAGTACTTACTACAAAGCTTCCAAAGGAAAAT TGCCTATTAAATGGATGGCTCCAGAGTCAATCAATTTTCGACGTTTTACCTCAGCTAGTGACGTATGGATGTTTGGTGTGTGTATGTGGG AGATACTGATGCATGGTGTGAAGCCTTTTCAAGGAGTGAAGAACAATGATGTAATCGGTCGAATTGAAAATGGGGAAAGATTACCAATGC CTCCAAATTGTCCTCCTACCCTCTACAGCCTTATGACGAAATGCTGGGCCTATGACCCCAGCAGGCGGCCCAGGTTTACTGAACTTAAAG CTCAGCTCAGCACAATCCTGGAGGAAGAGAAGGCTCAGCAAGAAGAGCGCATGAGGATGGAGTCCAGAAGACAGGCCACAGTGTCCTGGG ACTCCGGAGGGTCTGATGAAGCACCGCCCAAGCCCAGCAGACCGGGTTATCCCAGTCCGAGGTCCAGCGAAGGATTTTATCCCAGCCCAC AGCACATGGTACAAACCAATCATTACCAGGTTTCTGGCTACCCTGGTTCACATGGAATCACAGCCATGGCTGGCAGCATCTATCCAGGTC AGGCATCTCTTTTGGACCAAACAGATTCATGGAATCATAGACCTCAGGAGATAGCAATGTGGCAGCCCAATGTGGAGGACTCTACAGTAT TGGACCTGCGAGGGATTGGGCAAGTGTTGCCAACCCATCTGATGGAAGAGCGTCTAATCCGACAGCAACAGGAAATGGAAGAAGATCAGC GCTGGCTGGAAAAAGAGGAAAGATTTCTGAAACCTGATGTGAGACTCTCTCGAGGCAGTATTGACAGGGAGGATGGAAGTCTTCAGGGTC CGATTGGAAACCAACATATATATCAGCCTGTGGGTAAACCAGGTAAAGAAGAAAAGAATTGGGCGGAAAGAAATCCTGCAGCTCCACCAA AGAAACCGCCTCGCCCTGGAGCTCCCGGTCATCTGGGAAGCCTTGCCAGCCTCAGCAGCCCTGCTGACAGCTACAACGAGGGTGTCAAGT TCTGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGCCACCAGATCCTCTTGCAAGATTGCCCCAACTTAAACGCCACATAAAACAGCT CCTAATTGACATGGGCAAAGTACAGCAGATAGCAACTCTTTGCTCTGTATGACAACAGTGAACACTTAATGAAAGAATGTGGCTTTCTTC AGTCAAAGCATTTTTATTATCCACGTGATGGCTAAGTGGATAATTTAAAAGCTTAGTAATGTCTGGTCATTCACTGATTTGTGATGTCAA TAGGATGGCACCTTGGAAAGAAAAATGAAGAACAACTTTATCAAGGAAGCTAGTATTTAAAAACAAATTCATGAGCAAGCTGCAAATGAG AATGTGTTATATGCCAAGGAACAATGAAGTAGAATATAATGTATACTAAGGGATTTCAAGTTCTCAGAATTTTTGAGTAGTTGCTTACGT GAAGCTCAAGATACCTGTAGAAAGAAATATGGTATATTTGTATAGTTTTTAATAGAAAGATCTATGTTTATAAACCAGCACTTGGCCAAA AACAAAATTGTAAAGGAAATTTAAATTCTGGAGAATTCTACAGGGTTGCTCTAAGAACTGTCTTCTCAGCAGTTGATCCAGCTGTACGGA AATTTAGGGTATTTAAACTTTTAAAGGATCATGAGCTGTTTCTTGGGCGATGAATGTTCTCAATCAGAAAACTGACAGTAGAAATCTCAC TTCTGGGGAAAACAGTTGTGGAATTCTTACTTCATTATGAATGTATTTAAAAAACAAACACCAAATAATTGGAATATATTGCAGGCATTA AGCTCATTAAAAACAAACTGGCTTGCAGAAGGGTCCGATGTGCCAAGTGATCATGATTCTGCTGGAAAGAGGATTTTAAATATTGTGGGA GTTCTCCCACCCTAAGTCTTACATAATGCCACCAGTCCATCCAAAACCTATATATCACCTATACTATATATATCATATATATAGTTGAAT GGCAGTATTCAGGCTCAACGTACAGTTTGATCCTGAGTATGCTTGGTGTTTGCCTTCAGAAAAAAAAAAATACATTGTAAATAACCTCAG CTGGGATGAGGAGTGACAGAATATCAAAATAATTTGTGGCTGTGGATTTTTTTAACTGCTAGTAGTGGAATACTGGAAAAGCTTCATTTC TGAAGATGAATTTTATTTTTAAAAAATACATGCACACTCAAAACTTTTAGCTTTGATCACAAGTGGACAAATTTCTGAAACCAAAGGCAA CTAAGTTGCTGTGTTAGCTCTTGCTGGATTTTGAGCCTAGGTCCTACTGTCTGCCAGTACTCATGTGAGTTGTATGTGCCCCCAGTGCTA CATACGCAGGTATGCGTAAGTGTGTATGCTTGTTTTAAACAAACACTCAACGTACATATGTACATAATCTACACATATTTATATCACATA TCTAGTTTTATTACTATAGACTATACGAATTGGTGGTTAACATGAAATGTTACCTTTTAACAGACTGTTTTTAAAAATTAAAAATGTATG TATAGGTTTTGAAATTTTTTTAAAAGGGGAGAAAGACTGTTAAGAGGAGGCTATTTGATGACATAACACTTGAATATTTTATGCCTCATT CTGTTTATCAGTTCTCGCAATCTGTATAAATGCATTTTAGAACTGATAGACAGTAAACTTGAATTTATCTTTGATAAGAATACATGCCAC TGTACATTCAGATATTATTTAAATTTGCAAACACATTGTTCTATATGTAAGGGTACTGTATGTAAAACTCTGTATTAAAACTATTCCACA TATCCTAAAATTTCAGCTTGCCTTTTTGCGGCCTTATATTTTGATGTAAAGATTAAAAGAATGTGCAAAACAGTCAGAAATTTTTATTGC CTTTTGAGATTCTCCAACTTGACAAATGTGCCAAAGATCAACAGACAGAAAATATCATCCTGTGTATTTACTTGTCATACTTTAACTTTG TGAAAGATCTTACTGATAAATGAAAAGCTTTAGCAGAGGTGGTATTGTGGGGTAATTGCTTAAATTTACATATCAAAGTAAAAAAGTAGT GCCTGTATTCCATGTGTGGAGTAAATTTGCTAATGTCTATATTTTATGATTGATACTATTATTTTTCCTTTGCATTTTAAAATAGTGGCT CTAATATTTTCCCTGTCATGGCTACATTCTAGACATTGAATTTATATCTTCTTTTTTTCAGATACGGAGCAAATAGCATCCTTAACCTAT GAATAATGGTGTTGCCTAGATTCTTGTCACACACACAGAAGACCCTTTGTACCTAGTAACATTCATCCTCTTGATTCCTGGTGAACACGG TTAAATTCATGCACATTTGTTCTTGTAGTTTCTAAAAATTAGATCAATTTATTTGTTAGCCAGCAAATTGAAAATTCCATTATTAGATTA ATGAAATTTTTGCTCTGCTTATATGTATACGAACTGGAAATCTGAATTTTTAAATTTAGATCTTTAAATCAAATTATTTTTATGCATATT TTCATTTAATATAGAGTATACCAATCGATTGAAGCCTTTCACAAGTAGTGCGCTGAGCTTTTCTTATTGAAGAGAGTGAATTAGTTTCTG AGAAGTCAGTCTATTGTGAAAAGTTTCAGATGAGATTATTTTCTTTTAGTCTTTTTAAATATCACTATATGTATTTAAATAGAAGCAATA AACTAGAGAGAGTGTTTCTTGAAAAGACAATGTTTTATTTGCCACCAGGCAGAACAGAATGAGCATTGGTAGAGAAGGCTCCCTCTTGGT ATGTTACTGATAAACTTGTACTTCCTCATACTTGTTTGTGGTTCTACTGACTTATTTCCAAACTTAAGAGTAATGTACTTCGAAAACAAC TTGGTTATTCTTTAAATTTCAGGTAAAACCCCTTTTCCTAACACTCATCTTATTTCCACTGTCTTATTTCCTCTCAGATGTTCATATTTC >70048_70048_2_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000395218_PHF20L1_chr8_133858025_ENST00000395386_length(amino acids)=940AA_BP=913 MAAAYLDPNLNHTPNSSTKTHLGTGMERSPGAMERVLKVFHYFESNSEPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHL RSEEVHWLHVDMGVSSVREKYELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSY WEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISV ELAIGPEEGISYLTDKGCNPTHLADFTQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGTSQSFII RPQKEGERALPSIPKLANSEKQGMRTHAVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALA VAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND VIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKAQQEERMRMESRRQATVSWDSGGSDEAPPKPSRPGY PSPRSSEGFYPSPQHMVQTNHYQVSGYPGSHGITAMAGSIYPGQASLLDQTDSWNHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEE RLIRQQQEMEEDQRWLEKEERFLKPDVRLSRGSIDREDGSLQGPIGNQHIYQPVGKPGKEEKNWAERNPAAPPKKPPRPGAPGHLGSLAS -------------------------------------------------------------- >70048_70048_3_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000430260_PHF20L1_chr8_133858025_ENST00000395386_length(transcript)=4124nt_BP=1097nt AACAGCACATTCTAGCCTCCAGCCAAGCAGGAATGTCTTTTTAAACAGTTGAGCAAATTCCCAGATTAGAAAGTCTGGTGCACTGATGTC ACTCTTTCCTGAGTAATTTTTGGGTGGTTGTTTACTGCACACTATCTACCAGGAGCCTAGAAACTTTGAATGAGTGTCATTATTAGAACT CTAGAGTTGTAGGAATGTAGGAAGAGCTGTTTGCCACAGTTAGGACGAGGGTTTCAAACTGTCTGCTGAGCCCTGGGGCATCTGCGTGGA ATGGGAAACTAGCAAAGTCTCGCTTTGGCTGCATTCTGAGGGGTTTATGTGATGGCAAACAGCCAAGATGAAGAAGCTGCCTAGCAGTCG CTGCAGCGGCTGCAGCGTTATGTGGGACTTCAGATAGCTTCTGAGTAGTCAAGCAGTGCACAATCCTGGAGGAAGAGAAGGCTCAGCAAG AAGAGCGCATGAGGATGGAGTCCAGAAGACAGGCCACAGTGTCCTGGGACTCCGGAGGGTCTGATGAAGCACCGCCCAAGCCCAGCAGAC CGGGTTATCCCAGTCCGAGGTCCAGCGAAGGATTTTATCCCAGCCCACAGCACATGGTACAAACCAATCATTACCAGGTTTCTGGCTACC CTGGTTCACATGGAATCACAGCCATGGCTGGCAGCATCTATCCAGGTCAGGCATCTCTTTTGGACCAAACAGATTCATGGAATCATAGAC CTCAGGAGATAGCAATGTGGCAGCCCAATGTGGAGGACTCTACAGTATTGGACCTGCGAGGGATTGGGCAAGTGTTGCCAACCCATCTGA TGGAAGAGCGTCTAATCCGACAGCAACAGGAAATGGAAGAAGATCAGCGCTGGCTGGAAAAAGAGGAAAGATTTCTGAAACCTGATGTGA GACTCTCTCGAGGCAGTATTGACAGGGAGGATGGAAGTCTTCAGGGTCCGATTGGAAACCAACATATATATCAGCCTGTGGGTAAACCAG ATCCTGCAGCTCCACCAAAGAAACCGCCTCGCCCTGGAGCTCCCGGTCATCTGGGAAGCCTTGCCAGCCTCAGCAGCCCTGCTGACAGCT ACAACGAGGGTGTCAAGTTCTGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGCCACCAGATCCTCTTGCAAGATTGCCCCAACTTAA ACGCCACATAAAACAGCTCCTAATTGACATGGGCAAAGTACAGCAGATAGCAACTCTTTGCTCTGTATGACAACAGTGAACACTTAATGA AAGAATGTGGCTTTCTTCAGTCAAAGCATTTTTATTATCCACGTGATGGCTAAGTGGATAATTTAAAAGCTTAGTAATGTCTGGTCATTC ACTGATTTGTGATGTCAATAGGATGGCACCTTGGAAAGAAAAATGAAGAACAACTTTATCAAGGAAGCTAGTATTTAAAAACAAATTCAT GAGCAAGCTGCAAATGAGAATGTGTTATATGCCAAGGAACAATGAAGTAGAATATAATGTATACTAAGGGATTTCAAGTTCTCAGAATTT TTGAGTAGTTGCTTACGTGAAGCTCAAGATACCTGTAGAAAGAAATATGGTATATTTGTATAGTTTTTAATAGAAAGATCTATGTTTATA AACCAGCACTTGGCCAAAAACAAAATTGTAAAGGAAATTTAAATTCTGGAGAATTCTACAGGGTTGCTCTAAGAACTGTCTTCTCAGCAG TTGATCCAGCTGTACGGAAATTTAGGGTATTTAAACTTTTAAAGGATCATGAGCTGTTTCTTGGGCGATGAATGTTCTCAATCAGAAAAC TGACAGTAGAAATCTCACTTCTGGGGAAAACAGTTGTGGAATTCTTACTTCATTATGAATGTATTTAAAAAACAAACACCAAATAATTGG AATATATTGCAGGCATTAAGCTCATTAAAAACAAACTGGCTTGCAGAAGGGTCCGATGTGCCAAGTGATCATGATTCTGCTGGAAAGAGG ATTTTAAATATTGTGGGAGTTCTCCCACCCTAAGTCTTACATAATGCCACCAGTCCATCCAAAACCTATATATCACCTATACTATATATA TCATATATATAGTTGAATGGCAGTATTCAGGCTCAACGTACAGTTTGATCCTGAGTATGCTTGGTGTTTGCCTTCAGAAAAAAAAAAATA CATTGTAAATAACCTCAGCTGGGATGAGGAGTGACAGAATATCAAAATAATTTGTGGCTGTGGATTTTTTTAACTGCTAGTAGTGGAATA CTGGAAAAGCTTCATTTCTGAAGATGAATTTTATTTTTAAAAAATACATGCACACTCAAAACTTTTAGCTTTGATCACAAGTGGACAAAT TTCTGAAACCAAAGGCAACTAAGTTGCTGTGTTAGCTCTTGCTGGATTTTGAGCCTAGGTCCTACTGTCTGCCAGTACTCATGTGAGTTG TATGTGCCCCCAGTGCTACATACGCAGGTATGCGTAAGTGTGTATGCTTGTTTTAAACAAACACTCAACGTACATATGTACATAATCTAC ACATATTTATATCACATATCTAGTTTTATTACTATAGACTATACGAATTGGTGGTTAACATGAAATGTTACCTTTTAACAGACTGTTTTT AAAAATTAAAAATGTATGTATAGGTTTTGAAATTTTTTTAAAAGGGGAGAAAGACTGTTAAGAGGAGGCTATTTGATGACATAACACTTG AATATTTTATGCCTCATTCTGTTTATCAGTTCTCGCAATCTGTATAAATGCATTTTAGAACTGATAGACAGTAAACTTGAATTTATCTTT GATAAGAATACATGCCACTGTACATTCAGATATTATTTAAATTTGCAAACACATTGTTCTATATGTAAGGGTACTGTATGTAAAACTCTG TATTAAAACTATTCCACATATCCTAAAATTTCAGCTTGCCTTTTTGCGGCCTTATATTTTGATGTAAAGATTAAAAGAATGTGCAAAACA GTCAGAAATTTTTATTGCCTTTTGAGATTCTCCAACTTGACAAATGTGCCAAAGATCAACAGACAGAAAATATCATCCTGTGTATTTACT TGTCATACTTTAACTTTGTGAAAGATCTTACTGATAAATGAAAAGCTTTAGCAGAGGTGGTATTGTGGGGTAATTGCTTAAATTTACATA TCAAAGTAAAAAAGTAGTGCCTGTATTCCATGTGTGGAGTAAATTTGCTAATGTCTATATTTTATGATTGATACTATTATTTTTCCTTTG CATTTTAAAATAGTGGCTCTAATATTTTCCCTGTCATGGCTACATTCTAGACATTGAATTTATATCTTCTTTTTTTCAGATACGGAGCAA ATAGCATCCTTAACCTATGAATAATGGTGTTGCCTAGATTCTTGTCACACACACAGAAGACCCTTTGTACCTAGTAACATTCATCCTCTT GATTCCTGGTGAACACGGTTAAATTCATGCACATTTGTTCTTGTAGTTTCTAAAAATTAGATCAATTTATTTGTTAGCCAGCAAATTGAA AATTCCATTATTAGATTAATGAAATTTTTGCTCTGCTTATATGTATACGAACTGGAAATCTGAATTTTTAAATTTAGATCTTTAAATCAA ATTATTTTTATGCATATTTTCATTTAATATAGAGTATACCAATCGATTGAAGCCTTTCACAAGTAGTGCGCTGAGCTTTTCTTATTGAAG AGAGTGAATTAGTTTCTGAGAAGTCAGTCTATTGTGAAAAGTTTCAGATGAGATTATTTTCTTTTAGTCTTTTTAAATATCACTATATGT ATTTAAATAGAAGCAATAAACTAGAGAGAGTGTTTCTTGAAAAGACAATGTTTTATTTGCCACCAGGCAGAACAGAATGAGCATTGGTAG AGAAGGCTCCCTCTTGGTATGTTACTGATAAACTTGTACTTCCTCATACTTGTTTGTGGTTCTACTGACTTATTTCCAAACTTAAGAGTA ATGTACTTCGAAAACAACTTGGTTATTCTTTAAATTTCAGGTAAAACCCCTTTTCCTAACACTCATCTTATTTCCACTGTCTTATTTCCT >70048_70048_3_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000430260_PHF20L1_chr8_133858025_ENST00000395386_length(amino acids)=251AA_BP=224 MEEEKAQQEERMRMESRRQATVSWDSGGSDEAPPKPSRPGYPSPRSSEGFYPSPQHMVQTNHYQVSGYPGSHGITAMAGSIYPGQASLLD QTDSWNHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEERLIRQQQEMEEDQRWLEKEERFLKPDVRLSRGSIDREDGSLQGPIGNQH -------------------------------------------------------------- >70048_70048_4_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000519419_PHF20L1_chr8_133858025_ENST00000395386_length(transcript)=6180nt_BP=3153nt TCTCTGACTGCAATGGAAAGAGGAAAGAGAAATTAGAAGTATTTTTTTAAATTGTCATTTGATTTCTTCAGAGTTATTGTGGGCTTCTGA ACTATTGCGGAAGCATGAGAAGATTCTGTAACTGAGAGGCATTCTTCAAGCTGCTGGAAAATATTACAGAAGGAACACCTTCCAAATTTT GCTTCAAGCTCTGAAAAAAGGAGCACACAGGGGAACCTTAGTCTTGCTTGTGGATCGAAGCAAATACTATCACAGCGAGGAACTGGGACT TTGTGTGCAGACTCCTGGCTTGATCTTTATAGGATTGGGTGTATGTTGTTGGAACTGGCAGGCCAAGAGGCCCTGAAACCAGCAGGTGCC ATCTATATGGAGAAAAGCGGATGTAGTCCATTTCCAGTGTGTTGGGCTAAAGAATATGACAGATACCTAGCATCTAGCAAAATAATGGCA GCTGCTTACCTTGACCCCAACTTGAATCACACACCAAATTCGAGTACTAAGACTCACCTGGGTACTGGTATGGAACGTTCTCCTGGTGCA ATGGAGCGAGTATTAAAGGTCTTTCATTATTTTGAAAGCAATAGTGAGCCAACCACCTGGGCCAGTATTATCAGGCATGGAGATGCTACT GATGTCAGGGGCATCATTCAGAAGATAGTGGACAGTCACAAAGTAAAGCATGTGGCCTGCTATGGATTCCGCCTCAGTCACCTGCGGTCA GAGGAGGTTCACTGGCTTCACGTGGATATGGGCGTCTCCAGTGTGAGGGAGAAGTATGAGCTTGCTCACCCACCAGAGGAGTGGAAATAT GAATTGAGAATTCGTTATTTGCCAAAAGGATTTCTAAACCAGTTTACTGAAGATAAGCCAACTTTGAATTTCTTCTATCAACAGGTGAAG AGCGATTATATGTTAGAGATAGCTGATCAAGTGGACCAGGAAATTGCTTTGAAGTTGGGTTGTCTAGAAATACGGCGATCATACTGGGAG ATGCGGGGCAATGCACTAGAAAAGAAGTCTAACTATGAAGTATTAGAAAAAGATGTTGGTTTAAAGCGATTTTTTCCTAAGAGTTTACTG GATTCTGTCAAGGCCAAAACACTAAGAAAACTGATCCAACAAACATTTAGACAATTTGCCAACCTTAATAGAGAAGAAAGTATTCTGAAA TTCTTTGAGATCCTGTCTCCAGTCTACAGATTTGATAAGGAATGCTTCAAGTGTGCTCTTGGTTCAAGCTGGATTATTTCAGTGGAACTG GCAATCGGCCCAGAAGAAGGAATCAGTTACCTAACGGACAAGGGCTGCAATCCCACACATCTTGCTGACTTCACTCAAGTGCAAACCATT CAGTATTCAAACAGTGAAGACAAGGACAGAAAAGGAATGCTACAACTAAAAATAGCAGGTGCACCCGAGCCTCTGACAGTGACGGCACCA TCCCTAACCATTGCGGAGAATATGGCTGACCTAATAGATGGGTACTGCCGGCTGGTGAATGGAACCTCGCAGTCATTTATCATCAGACCT CAGAAAGAAGGTGAACGGGCTTTGCCATCAATACCAAAGTTGGCCAACAGCGAAAAGCAAGGCATGCGGACACACGCCGTCTCTGTGTCA GAAACAGATGATTATGCTGAGATTATAGATGAAGAAGATACTTACACCATGCCCTCAACCAGGGATTATGAGATTCAAAGAGAAAGAATA GAACTTGGACGATGTATTGGAGAAGGCCAATTTGGAGATGTACATCAAGGCATTTATATGAGTCCAGAGAATCCAGCTTTGGCGGTTGCA ATTAAAACATGTAAAAACTGTACTTCGGACAGCGTGAGAGAGAAATTTCTTCAAGAAGCCTTAACAATGCGTCAGTTTGACCATCCTCAT ATTGTGAAGCTGATTGGAGTCATCACAGAGAATCCTGTCTGGATAATCATGGAGCTGTGCACACTTGGAGAGCTGAGGTCATTTTTGCAA GTAAGGAAATACAGTTTGGATCTAGCATCTTTGATCCTGTATGCCTATCAGCTTAGTACAGCTCTTGCATATCTAGAGAGCAAAAGATTT GTACACAGGGACATTGCTGCTCGGAATGTTCTGGTGTCCTCAAATGATTGTGTAAAATTAGGAGACTTTGGATTATCCCGATATATGGAA GATAGTACTTACTACAAAGCTTCCAAAGGAAAATTGCCTATTAAATGGATGGCTCCAGAGTCAATCAATTTTCGACGTTTTACCTCAGCT AGTGACGTATGGATGTTTGGTGTGTGTATGTGGGAGATACTGATGCATGGTGTGAAGCCTTTTCAAGGAGTGAAGAACAATGATGTAATC GGTCGAATTGAAAATGGGGAAAGATTACCAATGCCTCCAAATTGTCCTCCTACCCTCTACAGCCTTATGACGAAATGCTGGGCCTATGAC CCCAGCAGGCGGCCCAGGTTTACTGAACTTAAAGCTCAGCTCAGCACAATCCTGGAGGAAGAGAAGGCTCAGCAAGAAGAGCGCATGAGG ATGGAGTCCAGAAGACAGGCCACAGTGTCCTGGGACTCCGGAGGGTCTGATGAAGCACCGCCCAAGCCCAGCAGACCGGGTTATCCCAGT CCGAGGTCCAGCGAAGGATTTTATCCCAGCCCACAGCACATGGTACAAACCAATCATTACCAGGTTTCTGGCTACCCTGGTTCACATGGA ATCACAGCCATGGCTGGCAGCATCTATCCAGGTCAGGCATCTCTTTTGGACCAAACAGATTCATGGAATCATAGACCTCAGGAGATAGCA ATGTGGCAGCCCAATGTGGAGGACTCTACAGTATTGGACCTGCGAGGGATTGGGCAAGTGTTGCCAACCCATCTGATGGAAGAGCGTCTA ATCCGACAGCAACAGGAAATGGAAGAAGATCAGCGCTGGCTGGAAAAAGAGGAAAGATTTCTGAAACCTGATGTGAGACTCTCTCGAGGC AGTATTGACAGGGAGGATGGAAGTCTTCAGGGTCCGATTGGAAACCAACATATATATCAGCCTGTGGGTAAACCAGATCCTGCAGCTCCA CCAAAGAAACCGCCTCGCCCTGGAGCTCCCGGTCATCTGGGAAGCCTTGCCAGCCTCAGCAGCCCTGCTGACAGCTACAACGAGGGTGTC AAGTTCTGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGCCACCAGATCCTCTTGCAAGATTGCCCCAACTTAAACGCCACATAAAAC AGCTCCTAATTGACATGGGCAAAGTACAGCAGATAGCAACTCTTTGCTCTGTATGACAACAGTGAACACTTAATGAAAGAATGTGGCTTT CTTCAGTCAAAGCATTTTTATTATCCACGTGATGGCTAAGTGGATAATTTAAAAGCTTAGTAATGTCTGGTCATTCACTGATTTGTGATG TCAATAGGATGGCACCTTGGAAAGAAAAATGAAGAACAACTTTATCAAGGAAGCTAGTATTTAAAAACAAATTCATGAGCAAGCTGCAAA TGAGAATGTGTTATATGCCAAGGAACAATGAAGTAGAATATAATGTATACTAAGGGATTTCAAGTTCTCAGAATTTTTGAGTAGTTGCTT ACGTGAAGCTCAAGATACCTGTAGAAAGAAATATGGTATATTTGTATAGTTTTTAATAGAAAGATCTATGTTTATAAACCAGCACTTGGC CAAAAACAAAATTGTAAAGGAAATTTAAATTCTGGAGAATTCTACAGGGTTGCTCTAAGAACTGTCTTCTCAGCAGTTGATCCAGCTGTA CGGAAATTTAGGGTATTTAAACTTTTAAAGGATCATGAGCTGTTTCTTGGGCGATGAATGTTCTCAATCAGAAAACTGACAGTAGAAATC TCACTTCTGGGGAAAACAGTTGTGGAATTCTTACTTCATTATGAATGTATTTAAAAAACAAACACCAAATAATTGGAATATATTGCAGGC ATTAAGCTCATTAAAAACAAACTGGCTTGCAGAAGGGTCCGATGTGCCAAGTGATCATGATTCTGCTGGAAAGAGGATTTTAAATATTGT GGGAGTTCTCCCACCCTAAGTCTTACATAATGCCACCAGTCCATCCAAAACCTATATATCACCTATACTATATATATCATATATATAGTT GAATGGCAGTATTCAGGCTCAACGTACAGTTTGATCCTGAGTATGCTTGGTGTTTGCCTTCAGAAAAAAAAAAATACATTGTAAATAACC TCAGCTGGGATGAGGAGTGACAGAATATCAAAATAATTTGTGGCTGTGGATTTTTTTAACTGCTAGTAGTGGAATACTGGAAAAGCTTCA TTTCTGAAGATGAATTTTATTTTTAAAAAATACATGCACACTCAAAACTTTTAGCTTTGATCACAAGTGGACAAATTTCTGAAACCAAAG GCAACTAAGTTGCTGTGTTAGCTCTTGCTGGATTTTGAGCCTAGGTCCTACTGTCTGCCAGTACTCATGTGAGTTGTATGTGCCCCCAGT GCTACATACGCAGGTATGCGTAAGTGTGTATGCTTGTTTTAAACAAACACTCAACGTACATATGTACATAATCTACACATATTTATATCA CATATCTAGTTTTATTACTATAGACTATACGAATTGGTGGTTAACATGAAATGTTACCTTTTAACAGACTGTTTTTAAAAATTAAAAATG TATGTATAGGTTTTGAAATTTTTTTAAAAGGGGAGAAAGACTGTTAAGAGGAGGCTATTTGATGACATAACACTTGAATATTTTATGCCT CATTCTGTTTATCAGTTCTCGCAATCTGTATAAATGCATTTTAGAACTGATAGACAGTAAACTTGAATTTATCTTTGATAAGAATACATG CCACTGTACATTCAGATATTATTTAAATTTGCAAACACATTGTTCTATATGTAAGGGTACTGTATGTAAAACTCTGTATTAAAACTATTC CACATATCCTAAAATTTCAGCTTGCCTTTTTGCGGCCTTATATTTTGATGTAAAGATTAAAAGAATGTGCAAAACAGTCAGAAATTTTTA TTGCCTTTTGAGATTCTCCAACTTGACAAATGTGCCAAAGATCAACAGACAGAAAATATCATCCTGTGTATTTACTTGTCATACTTTAAC TTTGTGAAAGATCTTACTGATAAATGAAAAGCTTTAGCAGAGGTGGTATTGTGGGGTAATTGCTTAAATTTACATATCAAAGTAAAAAAG TAGTGCCTGTATTCCATGTGTGGAGTAAATTTGCTAATGTCTATATTTTATGATTGATACTATTATTTTTCCTTTGCATTTTAAAATAGT GGCTCTAATATTTTCCCTGTCATGGCTACATTCTAGACATTGAATTTATATCTTCTTTTTTTCAGATACGGAGCAAATAGCATCCTTAAC CTATGAATAATGGTGTTGCCTAGATTCTTGTCACACACACAGAAGACCCTTTGTACCTAGTAACATTCATCCTCTTGATTCCTGGTGAAC ACGGTTAAATTCATGCACATTTGTTCTTGTAGTTTCTAAAAATTAGATCAATTTATTTGTTAGCCAGCAAATTGAAAATTCCATTATTAG ATTAATGAAATTTTTGCTCTGCTTATATGTATACGAACTGGAAATCTGAATTTTTAAATTTAGATCTTTAAATCAAATTATTTTTATGCA TATTTTCATTTAATATAGAGTATACCAATCGATTGAAGCCTTTCACAAGTAGTGCGCTGAGCTTTTCTTATTGAAGAGAGTGAATTAGTT TCTGAGAAGTCAGTCTATTGTGAAAAGTTTCAGATGAGATTATTTTCTTTTAGTCTTTTTAAATATCACTATATGTATTTAAATAGAAGC AATAAACTAGAGAGAGTGTTTCTTGAAAAGACAATGTTTTATTTGCCACCAGGCAGAACAGAATGAGCATTGGTAGAGAAGGCTCCCTCT TGGTATGTTACTGATAAACTTGTACTTCCTCATACTTGTTTGTGGTTCTACTGACTTATTTCCAAACTTAAGAGTAATGTACTTCGAAAA CAACTTGGTTATTCTTTAAATTTCAGGTAAAACCCCTTTTCCTAACACTCATCTTATTTCCACTGTCTTATTTCCTCTCAGATGTTCATA >70048_70048_4_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000519419_PHF20L1_chr8_133858025_ENST00000395386_length(amino acids)=988AA_BP=961 MCADSWLDLYRIGCMLLELAGQEALKPAGAIYMEKSGCSPFPVCWAKEYDRYLASSKIMAAAYLDPNLNHTPNSSTKTHLGTGMERSPGA MERVLKVFHYFESNSEPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHLRSEEVHWLHVDMGVSSVREKYELAHPPEEWKY ELRIRYLPKGFLNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSYWEMRGNALEKKSNYEVLEKDVGLKRFFPKSLL DSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGCNPTHLADFTQVQTI QYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGTSQSFIIRPQKEGERALPSIPKLANSEKQGMRTHAVSVS ETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH IVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYD PSRRPRFTELKAQLSTILEEEKAQQEERMRMESRRQATVSWDSGGSDEAPPKPSRPGYPSPRSSEGFYPSPQHMVQTNHYQVSGYPGSHG ITAMAGSIYPGQASLLDQTDSWNHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEERLIRQQQEMEEDQRWLEKEERFLKPDVRLSRG -------------------------------------------------------------- >70048_70048_5_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000522684_PHF20L1_chr8_133858025_ENST00000395386_length(transcript)=5966nt_BP=2939nt GACCACTGTGAGCCCGCGGCGTGAGGCGTGGGAGGAAGCGCGGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACG GCGCCGAGCCGCGGTCCGAGCAGAACTGGGGCTCCCTTGCATCTTCCAGTTACAAATTCAGTGCCTTCTGCAGTTTCCCCAGAGCTCCTC AAGAATAACGGAAGGGAGAATATGACAGATACCTAGCATCTAGCAAAATAATGGCAGCTGCTTACCTTGACCCCAACTTGAATCACACAC CAAATTCGAGTACTAAGACTCACCTGGGTACTGGTATGGAACGTTCTCCTGGTGCAATGGAGCGAGTATTAAAGGTCTTTCATTATTTTG AAAGCAATAGTGAGCCAACCACCTGGGCCAGTATTATCAGGCATGGAGATGCTACTGATGTCAGGGGCATCATTCAGAAGATAGTGGACA GTCACAAAGTAAAGCATGTGGCCTGCTATGGATTCCGCCTCAGTCACCTGCGGTCAGAGGAGGTTCACTGGCTTCACGTGGATATGGGCG TCTCCAGTGTGAGGGAGAAGTATGAGCTTGCTCACCCACCAGAGGAGTGGAAATATGAATTGAGAATTCGTTATTTGCCAAAAGGATTTC TAAACCAGTTTACTGAAGATAAGCCAACTTTGAATTTCTTCTATCAACAGGTGAAGAGCGATTATATGTTAGAGATAGCTGATCAAGTGG ACCAGGAAATTGCTTTGAAGTTGGGTTGTCTAGAAATACGGCGATCATACTGGGAGATGCGGGGCAATGCACTAGAAAAGAAGTCTAACT ATGAAGTATTAGAAAAAGATGTTGGTTTAAAGCGATTTTTTCCTAAGAGTTTACTGGATTCTGTCAAGGCCAAAACACTAAGAAAACTGA TCCAACAAACATTTAGACAATTTGCCAACCTTAATAGAGAAGAAAGTATTCTGAAATTCTTTGAGATCCTGTCTCCAGTCTACAGATTTG ATAAGGAATGCTTCAAGTGTGCTCTTGGTTCAAGCTGGATTATTTCAGTGGAACTGGCAATCGGCCCAGAAGAAGGAATCAGTTACCTAA CGGACAAGGGCTGCAATCCCACACATCTTGCTGACTTCACTCAAGTGCAAACCATTCAGTATTCAAACAGTGAAGACAAGGACAGAAAAG GAATGCTACAACTAAAAATAGCAGGTGCACCCGAGCCTCTGACAGTGACGGCACCATCCCTAACCATTGCGGAGAATATGGCTGACCTAA TAGATGGGTACTGCCGGCTGGTGAATGGAACCTCGCAGTCATTTATCATCAGACCTCAGAAAGAAGGTGAACGGGCTTTGCCATCAATAC CAAAGTTGGCCAACAGCGAAAAGCAAGGCATGCGGACACACGCCGTCTCTGTGTCAGAAACAGATGATTATGCTGAGATTATAGATGAAG AAGATACTTACACCATGCCCTCAACCAGGGATTATGAGATTCAAAGAGAAAGAATAGAACTTGGACGATGTATTGGAGAAGGCCAATTTG GAGATGTACATCAAGGCATTTATATGAGTCCAGAGAATCCAGCTTTGGCGGTTGCAATTAAAACATGTAAAAACTGTACTTCGGACAGCG TGAGAGAGAAATTTCTTCAAGAAGCCTTAACAATGCGTCAGTTTGACCATCCTCATATTGTGAAGCTGATTGGAGTCATCACAGAGAATC CTGTCTGGATAATCATGGAGCTGTGCACACTTGGAGAGCTGAGGTCATTTTTGCAAGTAAGGAAATACAGTTTGGATCTAGCATCTTTGA TCCTGTATGCCTATCAGCTTAGTACAGCTCTTGCATATCTAGAGAGCAAAAGATTTGTACACAGGGACATTGCTGCTCGGAATGTTCTGG TGTCCTCAAATGATTGTGTAAAATTAGGAGACTTTGGATTATCCCGATATATGGAAGATAGTACTTACTACAAAGCTTCCAAAGGAAAAT TGCCTATTAAATGGATGGCTCCAGAGTCAATCAATTTTCGACGTTTTACCTCAGCTAGTGACGTATGGATGTTTGGTGTGTGTATGTGGG AGATACTGATGCATGGTGTGAAGCCTTTTCAAGGAGTGAAGAACAATGATGTAATCGGTCGAATTGAAAATGGGGAAAGATTACCAATGC CTCCAAATTGTCCTCCTACCCTCTACAGCCTTATGACGAAATGCTGGGCCTATGACCCCAGCAGGCGGCCCAGGTTTACTGAACTTAAAG CTCAGCTCAGCACAATCCTGGAGGAAGAGAAGGCTCAGCAAGAAGAGCGCATGAGGATGGAGTCCAGAAGACAGGCCACAGTGTCCTGGG ACTCCGGAGGGTCTGATGAAGCACCGCCCAAGCCCAGCAGACCGGGTTATCCCAGTCCGAGGTCCAGCGAAGGATTTTATCCCAGCCCAC AGCACATGGTACAAACCAATCATTACCAGGTTTCTGGCTACCCTGGTTCACATGGAATCACAGCCATGGCTGGCAGCATCTATCCAGGTC AGGCATCTCTTTTGGACCAAACAGATTCATGGAATCATAGACCTCAGGAGATAGCAATGTGGCAGCCCAATGTGGAGGACTCTACAGTAT TGGACCTGCGAGGGATTGGGCAAGTGTTGCCAACCCATCTGATGGAAGAGCGTCTAATCCGACAGCAACAGGAAATGGAAGAAGATCAGC GCTGGCTGGAAAAAGAGGAAAGATTTCTGAAACCTGATGTGAGACTCTCTCGAGGCAGTATTGACAGGGAGGATGGAAGTCTTCAGGGTC CGATTGGAAACCAACATATATATCAGCCTGTGGGTAAACCAGATCCTGCAGCTCCACCAAAGAAACCGCCTCGCCCTGGAGCTCCCGGTC ATCTGGGAAGCCTTGCCAGCCTCAGCAGCCCTGCTGACAGCTACAACGAGGGTGTCAAGTTCTGGAAAGCTGGCTTGATTTCACAGGGGA GTTGGAGCCACCAGATCCTCTTGCAAGATTGCCCCAACTTAAACGCCACATAAAACAGCTCCTAATTGACATGGGCAAAGTACAGCAGAT AGCAACTCTTTGCTCTGTATGACAACAGTGAACACTTAATGAAAGAATGTGGCTTTCTTCAGTCAAAGCATTTTTATTATCCACGTGATG GCTAAGTGGATAATTTAAAAGCTTAGTAATGTCTGGTCATTCACTGATTTGTGATGTCAATAGGATGGCACCTTGGAAAGAAAAATGAAG AACAACTTTATCAAGGAAGCTAGTATTTAAAAACAAATTCATGAGCAAGCTGCAAATGAGAATGTGTTATATGCCAAGGAACAATGAAGT AGAATATAATGTATACTAAGGGATTTCAAGTTCTCAGAATTTTTGAGTAGTTGCTTACGTGAAGCTCAAGATACCTGTAGAAAGAAATAT GGTATATTTGTATAGTTTTTAATAGAAAGATCTATGTTTATAAACCAGCACTTGGCCAAAAACAAAATTGTAAAGGAAATTTAAATTCTG GAGAATTCTACAGGGTTGCTCTAAGAACTGTCTTCTCAGCAGTTGATCCAGCTGTACGGAAATTTAGGGTATTTAAACTTTTAAAGGATC ATGAGCTGTTTCTTGGGCGATGAATGTTCTCAATCAGAAAACTGACAGTAGAAATCTCACTTCTGGGGAAAACAGTTGTGGAATTCTTAC TTCATTATGAATGTATTTAAAAAACAAACACCAAATAATTGGAATATATTGCAGGCATTAAGCTCATTAAAAACAAACTGGCTTGCAGAA GGGTCCGATGTGCCAAGTGATCATGATTCTGCTGGAAAGAGGATTTTAAATATTGTGGGAGTTCTCCCACCCTAAGTCTTACATAATGCC ACCAGTCCATCCAAAACCTATATATCACCTATACTATATATATCATATATATAGTTGAATGGCAGTATTCAGGCTCAACGTACAGTTTGA TCCTGAGTATGCTTGGTGTTTGCCTTCAGAAAAAAAAAAATACATTGTAAATAACCTCAGCTGGGATGAGGAGTGACAGAATATCAAAAT AATTTGTGGCTGTGGATTTTTTTAACTGCTAGTAGTGGAATACTGGAAAAGCTTCATTTCTGAAGATGAATTTTATTTTTAAAAAATACA TGCACACTCAAAACTTTTAGCTTTGATCACAAGTGGACAAATTTCTGAAACCAAAGGCAACTAAGTTGCTGTGTTAGCTCTTGCTGGATT TTGAGCCTAGGTCCTACTGTCTGCCAGTACTCATGTGAGTTGTATGTGCCCCCAGTGCTACATACGCAGGTATGCGTAAGTGTGTATGCT TGTTTTAAACAAACACTCAACGTACATATGTACATAATCTACACATATTTATATCACATATCTAGTTTTATTACTATAGACTATACGAAT TGGTGGTTAACATGAAATGTTACCTTTTAACAGACTGTTTTTAAAAATTAAAAATGTATGTATAGGTTTTGAAATTTTTTTAAAAGGGGA GAAAGACTGTTAAGAGGAGGCTATTTGATGACATAACACTTGAATATTTTATGCCTCATTCTGTTTATCAGTTCTCGCAATCTGTATAAA TGCATTTTAGAACTGATAGACAGTAAACTTGAATTTATCTTTGATAAGAATACATGCCACTGTACATTCAGATATTATTTAAATTTGCAA ACACATTGTTCTATATGTAAGGGTACTGTATGTAAAACTCTGTATTAAAACTATTCCACATATCCTAAAATTTCAGCTTGCCTTTTTGCG GCCTTATATTTTGATGTAAAGATTAAAAGAATGTGCAAAACAGTCAGAAATTTTTATTGCCTTTTGAGATTCTCCAACTTGACAAATGTG CCAAAGATCAACAGACAGAAAATATCATCCTGTGTATTTACTTGTCATACTTTAACTTTGTGAAAGATCTTACTGATAAATGAAAAGCTT TAGCAGAGGTGGTATTGTGGGGTAATTGCTTAAATTTACATATCAAAGTAAAAAAGTAGTGCCTGTATTCCATGTGTGGAGTAAATTTGC TAATGTCTATATTTTATGATTGATACTATTATTTTTCCTTTGCATTTTAAAATAGTGGCTCTAATATTTTCCCTGTCATGGCTACATTCT AGACATTGAATTTATATCTTCTTTTTTTCAGATACGGAGCAAATAGCATCCTTAACCTATGAATAATGGTGTTGCCTAGATTCTTGTCAC ACACACAGAAGACCCTTTGTACCTAGTAACATTCATCCTCTTGATTCCTGGTGAACACGGTTAAATTCATGCACATTTGTTCTTGTAGTT TCTAAAAATTAGATCAATTTATTTGTTAGCCAGCAAATTGAAAATTCCATTATTAGATTAATGAAATTTTTGCTCTGCTTATATGTATAC GAACTGGAAATCTGAATTTTTAAATTTAGATCTTTAAATCAAATTATTTTTATGCATATTTTCATTTAATATAGAGTATACCAATCGATT GAAGCCTTTCACAAGTAGTGCGCTGAGCTTTTCTTATTGAAGAGAGTGAATTAGTTTCTGAGAAGTCAGTCTATTGTGAAAAGTTTCAGA TGAGATTATTTTCTTTTAGTCTTTTTAAATATCACTATATGTATTTAAATAGAAGCAATAAACTAGAGAGAGTGTTTCTTGAAAAGACAA TGTTTTATTTGCCACCAGGCAGAACAGAATGAGCATTGGTAGAGAAGGCTCCCTCTTGGTATGTTACTGATAAACTTGTACTTCCTCATA CTTGTTTGTGGTTCTACTGACTTATTTCCAAACTTAAGAGTAATGTACTTCGAAAACAACTTGGTTATTCTTTAAATTTCAGGTAAAACC CCTTTTCCTAACACTCATCTTATTTCCACTGTCTTATTTCCTCTCAGATGTTCATATTTCACATGTTCAAAATGAAGCGTACTATTTCCC >70048_70048_5_PTK2-PHF20L1_PTK2_chr8_141684396_ENST00000522684_PHF20L1_chr8_133858025_ENST00000395386_length(amino acids)=930AA_BP=903 MAAAYLDPNLNHTPNSSTKTHLGTGMERSPGAMERVLKVFHYFESNSEPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHL RSEEVHWLHVDMGVSSVREKYELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSY WEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISV ELAIGPEEGISYLTDKGCNPTHLADFTQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGTSQSFII RPQKEGERALPSIPKLANSEKQGMRTHAVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALA VAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND VIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKAQQEERMRMESRRQATVSWDSGGSDEAPPKPSRPGY PSPRSSEGFYPSPQHMVQTNHYQVSGYPGSHGITAMAGSIYPGQASLLDQTDSWNHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEE RLIRQQQEMEEDQRWLEKEERFLKPDVRLSRGSIDREDGSLQGPIGNQHIYQPVGKPDPAAPPKKPPRPGAPGHLGSLASLSSPADSYNE -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for PTK2-PHF20L1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000340930 | - | 29 | 33 | 912_1052 | 913.0 | 1066.0 | ARHGEF28 |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000521059 | - | 29 | 32 | 912_1052 | 903.0 | 1053.0 | ARHGEF28 |
Hgene | PTK2 | chr8:141684396 | chr8:133858025 | ENST00000522684 | - | 29 | 32 | 912_1052 | 903.0 | 1053.0 | ARHGEF28 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for PTK2-PHF20L1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for PTK2-PHF20L1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |