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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:RAB3D-DMBT1 (FusionGDB2 ID:71342)

Fusion Gene Summary for RAB3D-DMBT1

check button Fusion gene summary
Fusion gene informationFusion gene name: RAB3D-DMBT1
Fusion gene ID: 71342
HgeneTgene
Gene symbol

RAB3D

DMBT1

Gene ID

9545

1755

Gene nameRAB3D, member RAS oncogene familydeleted in malignant brain tumors 1
SynonymsD2-2|GOV|RAB16|RAD3DGP340|SAG|SALSA|muclin
Cytomap

19p13.2

10q26.13

Type of geneprotein-codingprotein-coding
Descriptionras-related protein Rab-3DRab3D upregulated with myeloid differentiationepididymis secretory sperm binding proteinglioblastoma overexpresseddeleted in malignant brain tumors 1 proteinglycoprotein 340hensinsalivary agglutininsalivary scavenger and agglutininsurfactant pulmonary-associated D-binding proteinvomeroglandin
Modification date2020031320200313
UniProtAcc.

Q9UGM3

Ensembl transtripts involved in fusion geneENST00000589655, ENST00000222120, 
ENST00000330163, ENST00000338354, 
ENST00000344338, ENST00000359586, 
ENST00000368909, ENST00000368955, 
ENST00000368956, 
Fusion gene scores* DoF score9 X 8 X 7=5042 X 2 X 2=8
# samples 102
** MAII scorelog2(10/504*10)=-2.33342373372519
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(2/8*10)=1.32192809488736
Context

PubMed: RAB3D [Title/Abstract] AND DMBT1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointRAB3D(11447848)-DMBT1(124395507), # samples:2
Anticipated loss of major functional domain due to fusion event.RAB3D-DMBT1 seems lost the major protein functional domain in Tgene partner, which is a tumor suppressor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneRAB3D

GO:0045453

bone resorption

21262767


check buttonFusion gene breakpoints across RAB3D (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across DMBT1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4HNSCTCGA-CV-7254-01ARAB3Dchr19

11447848

-DMBT1chr10

124395507

+
ChimerDB4HNSCTCGA-CV-7254RAB3Dchr19

11447848

-DMBT1chr10

124395507

+


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Fusion Gene ORF analysis for RAB3D-DMBT1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000589655ENST00000330163RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
Frame-shiftENST00000589655ENST00000338354RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
Frame-shiftENST00000589655ENST00000344338RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
Frame-shiftENST00000589655ENST00000359586RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
Frame-shiftENST00000589655ENST00000368909RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
Frame-shiftENST00000589655ENST00000368955RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
Frame-shiftENST00000589655ENST00000368956RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
In-frameENST00000222120ENST00000330163RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
In-frameENST00000222120ENST00000338354RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
In-frameENST00000222120ENST00000344338RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
In-frameENST00000222120ENST00000359586RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
In-frameENST00000222120ENST00000368909RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
In-frameENST00000222120ENST00000368955RAB3Dchr19

11447848

-DMBT1chr10

124395507

+
In-frameENST00000222120ENST00000368956RAB3Dchr19

11447848

-DMBT1chr10

124395507

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000222120RAB3Dchr1911447848-ENST00000344338DMBT1chr10124395507+19084894211569382
ENST00000222120RAB3Dchr1911447848-ENST00000368955DMBT1chr10124395507+19084894211569382
ENST00000222120RAB3Dchr1911447848-ENST00000330163DMBT1chr10124395507+19084894211569382
ENST00000222120RAB3Dchr1911447848-ENST00000338354DMBT1chr10124395507+19084894211569382
ENST00000222120RAB3Dchr1911447848-ENST00000368956DMBT1chr10124395507+19084894211569382
ENST00000222120RAB3Dchr1911447848-ENST00000368909DMBT1chr10124395507+19084894211569382
ENST00000222120RAB3Dchr1911447848-ENST00000359586DMBT1chr10124395507+19084894211569382

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000222120ENST00000344338RAB3Dchr1911447848-DMBT1chr10124395507+0.0047813880.9952186
ENST00000222120ENST00000368955RAB3Dchr1911447848-DMBT1chr10124395507+0.0047813880.9952186
ENST00000222120ENST00000330163RAB3Dchr1911447848-DMBT1chr10124395507+0.0047813880.9952186
ENST00000222120ENST00000338354RAB3Dchr1911447848-DMBT1chr10124395507+0.0047813880.9952186
ENST00000222120ENST00000368956RAB3Dchr1911447848-DMBT1chr10124395507+0.0047813880.9952186
ENST00000222120ENST00000368909RAB3Dchr1911447848-DMBT1chr10124395507+0.0047813880.9952186
ENST00000222120ENST00000359586RAB3Dchr1911447848-DMBT1chr10124395507+0.0047813880.9952186

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Fusion Genomic Features for RAB3D-DMBT1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
RAB3Dchr1911447847-DMBT1chr10124395506+5.23E-070.9999995
RAB3Dchr1911447847-DMBT1chr10124395506+5.23E-070.9999995
RAB3Dchr1911447847-DMBT1chr10124395506+5.23E-070.9999995
RAB3Dchr1911447847-DMBT1chr10124395506+5.23E-070.9999995

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for RAB3D-DMBT1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:11447848/chr10:124395507)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.DMBT1

Q9UGM3

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: May be considered as a candidate tumor suppressor gene for brain, lung, esophageal, gastric, and colorectal cancers. May play roles in mucosal defense system, cellular immune defense and epithelial differentiation. May play a role as an opsonin receptor for SFTPD and SPAR in macrophage tissues throughout the body, including epithelial cells lining the gastrointestinal tract. May play a role in liver regeneration. May be an important factor in fate decision and differentiation of transit-amplifying ductular (oval) cells within the hepatic lineage. Required for terminal differentiation of columnar epithelial cells during early embryogenesis. May function as a binding protein in saliva for the regulation of taste sensation. Binds to HIV-1 envelope protein and has been shown to both inhibit and facilitate viral transmission. Displays a broad calcium-dependent binding spectrum against both Gram-positive and Gram-negative bacteria, suggesting a role in defense against bacterial pathogens. Binds to a range of poly-sulfated and poly-phosphorylated ligands which may explain its broad bacterial-binding specificity. Inhibits cytoinvasion of S.enterica. Associates with the actin cytoskeleton and is involved in its remodeling during regulated exocytosis. Interacts with pancreatic zymogens in a pH-dependent manner and may act as a Golgi cargo receptor in the regulated secretory pathway of the pancreatic acinar cell. {ECO:0000269|PubMed:10485905, ECO:0000269|PubMed:11007786, ECO:0000269|PubMed:11751412, ECO:0000269|PubMed:16796526, ECO:0000269|PubMed:17548659, ECO:0000269|PubMed:17709527, ECO:0000269|PubMed:19189310, ECO:0000269|PubMed:9288095}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000222120-2551_5976220.0MotifEffector region
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000589655-2551_5976220.0MotifEffector region
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000222120-2529_3776220.0Nucleotide bindingGTP
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000222120-2548_5476220.0Nucleotide bindingGTP
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000589655-2529_3776220.0Nucleotide bindingGTP
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000589655-2548_5476220.0Nucleotide bindingGTP
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335401755_175914251786.0Compositional biasNote=Poly-Thr
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635401755_175914251786.0Compositional biasNote=Poly-Thr
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335401509_160914251786.0DomainSRCR 12
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335401640_174014251786.0DomainSRCR 13
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335401766_187714251786.0DomainCUB 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335401883_198614251786.0DomainSRCR 14
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335402008_211714251786.0DomainCUB 2
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335402126_238114251786.0DomainZP
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448532126_238120532414.0DomainZP
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847522126_238120432404.0DomainZP
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948532126_238120532414.0DomainZP
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547522126_238120432404.0DomainZP
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635401509_160914251786.0DomainSRCR 12
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635401640_174014251786.0DomainSRCR 13
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635401766_187714251786.0DomainCUB 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635401883_198614251786.0DomainSRCR 14
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635402008_211714251786.0DomainCUB 2
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635402126_238114251786.0DomainZP

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000222120-25135_13876220.0Nucleotide bindingGTP
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000222120-25165_16776220.0Nucleotide bindingGTP
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000222120-2577_8176220.0Nucleotide bindingGTP
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000589655-25135_13876220.0Nucleotide bindingGTP
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000589655-25165_16776220.0Nucleotide bindingGTP
HgeneRAB3Dchr19:11447848chr10:124395507ENST00000589655-2577_8176220.0Nucleotide bindingGTP
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448531755_175920532414.0Compositional biasNote=Poly-Thr
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847521755_175920432404.0Compositional biasNote=Poly-Thr
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948531755_175920532414.0Compositional biasNote=Poly-Thr
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547521755_175920432404.0Compositional biasNote=Poly-Thr
TgeneDMBT1chr19:11447848chr10:124395507ENST000003301633540102_20214251786.0DomainSRCR 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335401122_122214251786.0DomainSRCR 9
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335401251_135114251786.0DomainSRCR 10
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033016335401380_148014251786.0DomainSRCR 11
TgeneDMBT1chr19:11447848chr10:124395507ENST000003301633540234_33414251786.0DomainSRCR 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003301633540363_46314251786.0DomainSRCR 3
TgeneDMBT1chr19:11447848chr10:124395507ENST000003301633540494_59414251786.0DomainSRCR 4
TgeneDMBT1chr19:11447848chr10:124395507ENST000003301633540602_70214251786.0DomainSRCR 5
TgeneDMBT1chr19:11447848chr10:124395507ENST000003301633540733_83314251786.0DomainSRCR 6
TgeneDMBT1chr19:11447848chr10:124395507ENST000003301633540862_96214251786.0DomainSRCR 7
TgeneDMBT1chr19:11447848chr10:124395507ENST000003301633540993_109314251786.0DomainSRCR 8
TgeneDMBT1chr19:11447848chr10:124395507ENST000003383544853102_20220532414.0DomainSRCR 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448531122_122220532414.0DomainSRCR 9
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448531251_135120532414.0DomainSRCR 10
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448531380_148020532414.0DomainSRCR 11
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448531509_160920532414.0DomainSRCR 12
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448531640_174020532414.0DomainSRCR 13
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448531766_187720532414.0DomainCUB 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448531883_198620532414.0DomainSRCR 14
TgeneDMBT1chr19:11447848chr10:124395507ENST0000033835448532008_211720532414.0DomainCUB 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003383544853234_33420532414.0DomainSRCR 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003383544853363_46320532414.0DomainSRCR 3
TgeneDMBT1chr19:11447848chr10:124395507ENST000003383544853494_59420532414.0DomainSRCR 4
TgeneDMBT1chr19:11447848chr10:124395507ENST000003383544853602_70220532414.0DomainSRCR 5
TgeneDMBT1chr19:11447848chr10:124395507ENST000003383544853733_83320532414.0DomainSRCR 6
TgeneDMBT1chr19:11447848chr10:124395507ENST000003383544853862_96220532414.0DomainSRCR 7
TgeneDMBT1chr19:11447848chr10:124395507ENST000003383544853993_109320532414.0DomainSRCR 8
TgeneDMBT1chr19:11447848chr10:124395507ENST000003443384752102_20220432404.0DomainSRCR 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847521122_122220432404.0DomainSRCR 9
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847521251_135120432404.0DomainSRCR 10
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847521380_148020432404.0DomainSRCR 11
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847521509_160920432404.0DomainSRCR 12
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847521640_174020432404.0DomainSRCR 13
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847521766_187720432404.0DomainCUB 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847521883_198620432404.0DomainSRCR 14
TgeneDMBT1chr19:11447848chr10:124395507ENST0000034433847522008_211720432404.0DomainCUB 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003443384752234_33420432404.0DomainSRCR 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003443384752363_46320432404.0DomainSRCR 3
TgeneDMBT1chr19:11447848chr10:124395507ENST000003443384752494_59420432404.0DomainSRCR 4
TgeneDMBT1chr19:11447848chr10:124395507ENST000003443384752602_70220432404.0DomainSRCR 5
TgeneDMBT1chr19:11447848chr10:124395507ENST000003443384752733_83320432404.0DomainSRCR 6
TgeneDMBT1chr19:11447848chr10:124395507ENST000003443384752862_96220432404.0DomainSRCR 7
TgeneDMBT1chr19:11447848chr10:124395507ENST000003443384752993_109320432404.0DomainSRCR 8
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689094853102_20220532414.0DomainSRCR 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948531122_122220532414.0DomainSRCR 9
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948531251_135120532414.0DomainSRCR 10
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948531380_148020532414.0DomainSRCR 11
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948531509_160920532414.0DomainSRCR 12
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948531640_174020532414.0DomainSRCR 13
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948531766_187720532414.0DomainCUB 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948531883_198620532414.0DomainSRCR 14
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036890948532008_211720532414.0DomainCUB 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689094853234_33420532414.0DomainSRCR 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689094853363_46320532414.0DomainSRCR 3
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689094853494_59420532414.0DomainSRCR 4
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689094853602_70220532414.0DomainSRCR 5
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689094853733_83320532414.0DomainSRCR 6
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689094853862_96220532414.0DomainSRCR 7
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689094853993_109320532414.0DomainSRCR 8
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689554752102_20220432404.0DomainSRCR 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547521122_122220432404.0DomainSRCR 9
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547521251_135120432404.0DomainSRCR 10
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547521380_148020432404.0DomainSRCR 11
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547521509_160920432404.0DomainSRCR 12
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547521640_174020432404.0DomainSRCR 13
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547521766_187720432404.0DomainCUB 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547521883_198620432404.0DomainSRCR 14
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895547522008_211720432404.0DomainCUB 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689554752234_33420432404.0DomainSRCR 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689554752363_46320432404.0DomainSRCR 3
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689554752494_59420432404.0DomainSRCR 4
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689554752602_70220432404.0DomainSRCR 5
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689554752733_83320432404.0DomainSRCR 6
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689554752862_96220432404.0DomainSRCR 7
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689554752993_109320432404.0DomainSRCR 8
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689563540102_20214251786.0DomainSRCR 1
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635401122_122214251786.0DomainSRCR 9
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635401251_135114251786.0DomainSRCR 10
TgeneDMBT1chr19:11447848chr10:124395507ENST0000036895635401380_148014251786.0DomainSRCR 11
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689563540234_33414251786.0DomainSRCR 2
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689563540363_46314251786.0DomainSRCR 3
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689563540494_59414251786.0DomainSRCR 4
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689563540602_70214251786.0DomainSRCR 5
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689563540733_83314251786.0DomainSRCR 6
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689563540862_96214251786.0DomainSRCR 7
TgeneDMBT1chr19:11447848chr10:124395507ENST000003689563540993_109314251786.0DomainSRCR 8


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Fusion Gene Sequence for RAB3D-DMBT1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>71342_71342_1_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000330163_length(transcript)=1908nt_BP=489nt
CCTTCCTCCGCCTTCTGGGCGGAGCCCGCGCGGGATCCGGGTGGCTGCAGGCTGCTGGCTTCTGCGGCTGCGGGGTCGGGGTCGCGGCCA
GGGCCAAGCCGCAGCGAGTTCACAGGCGGAACCCCTGCAGGCGGCGCCCCCTACGCGAGGTCACCCCTGGGAAGGAGCGCAGCCCACCCG
GCCCCTCCGCATCCGAGCAGGACGCCCGTCTCCTCTCCCTGAGGATTTCAGGTCTCCCTGTCCCAGGAGGCTTGTGCCAAGATGGCATCA
GCTGGAGACACCCAGGCAGGCCCACGGGATGCAGCAGATCAGAACTTCGACTATATGTTCAAACTGCTACTGATAGGCAACAGCAGTGTG
GGCAAGACTTCCTTCCTGTTCCGATACGCGGACGACTCCTTCACTCCCGCCTTCGTCAGTACTGTGGGCATCGATTTCAAGGTCAAGACC
GTCTACCGCCATGACAAGAGGATCAAGCTGCAGATCTGGGCTTGAAGGTGGCTGCAACTATGATTATATTGAAGTTTTCGATGGCCCCTA
CCGCAGTTCCCCTCTCATTGCTCGAGTTTGTGATGGGGCCAGAGGCTCCTTCACTTCTTCCTCCAACTTCATGTCCATTCGCTTCATCAG
TGACCACAGCATCACAAGGAGAGGGTTCCGGGCTGAGTACTACTCCAGTCCCTCCAATGACAGCACCAACCTGCTCTGTCTGCCAAATCA
CATGCAAGCCAGTGTGAGCAGGAGCTATCTCCAATCCTTGGGCTTTTCTGCCAGTGACCTTGTCATTTCCACCTGGAATGGATACTACGA
GTGTCGGCCCCAGATAACGCCGAACCTGGTGATATTCACAATTCCCTACTCAGGCTGCGGCACCTTCAAGCAGGCAGACAATGACACCAT
CGACTATTCCAACTTCCTCACAGCAGCTGTCTCAGGTGGCATCATCAAGAGGAGGACAGACCTCCGTATTCACGTCAGCTGCAGAATGCT
TCAGAACACCTGGGTCGACACCATGTACATTGCTAATGACACCATCCACGTTGCTAATAACACCATCCAGGTCGAGGAAGTCCAGTATGG
CAATTTTGACGTGAACATTTCCTTTTATACTTCCTCATCTTTCTTGTATCCTGTGACCAGCCGCCCTTACTACGTGGACCTGAACCAGGA
CTTGTACGTTCAGGCTGAAATCCTCCATTCTGATGCTGTACTGACCTTGTTTGTGGACACCTGCGTGGCATCACCATACTCCAATGACTT
CACGTCTTTGACTTATGATCTAATCCGGAGTGGATGCGTGAGGGATGACACCTACGGACCCTACTCCTCGCCATCTCTTCGCATTGCCCG
CTTCCGGTTCAGGGCCTTCCACTTCCTGAACCGCTTCCCCTCCGTGTACCTGCGTTGTAAAATGGTGGTGTGCAGAGCGTATGACCCCTC
TTCCCGCTGCTACCGAGGCTGTGTGTTGAGGTCGAAGAGGGATGTGGGCTCCTACCAGGAAAAGGTGGACGTCGTCCTGGGTCCCATCCA
GCTGCAGACCCCCCCACGCCGAGAAGAGGAGCCTCGGTAGGTGGTCGCTCTCAGACCCCACTGTCCACCGGGGCGCAGACCCCTGACTCG
GGGACTTGGGATGTTCCTCTTGGTGTCATATTCCAACTCAGATTGAGCCCTACATTGTGCTGCACCTGGTCATACGGAGTTGAATCAGAC
CTGGTTCCCGCCTCCCCCAAGGCTCATGGTCCTTGGAGGACCCGTTGCAGGGTGAGGTCAAGAGAGTTCTGACCTGGATGGCCCATAGAC
CTGACGTCCCAGAATCCATGCTTCTCATCTGCAAAATGAAAATGTCAATACTTACTTCTTAGCACTGTTGAGAGGGTTACTTACATAAAG

>71342_71342_1_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000330163_length(amino acids)=382AA_BP=23
MWASISRSRPSTAMTRGSSCRSGLEGGCNYDYIEVFDGPYRSSPLIARVCDGARGSFTSSSNFMSIRFISDHSITRRGFRAEYYSSPSND
STNLLCLPNHMQASVSRSYLQSLGFSASDLVISTWNGYYECRPQITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTD
LRIHVSCRMLQNTWVDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQAEILHSDAVLTLFVDT
CVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFRAFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQE

--------------------------------------------------------------
>71342_71342_2_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000338354_length(transcript)=1908nt_BP=489nt
CCTTCCTCCGCCTTCTGGGCGGAGCCCGCGCGGGATCCGGGTGGCTGCAGGCTGCTGGCTTCTGCGGCTGCGGGGTCGGGGTCGCGGCCA
GGGCCAAGCCGCAGCGAGTTCACAGGCGGAACCCCTGCAGGCGGCGCCCCCTACGCGAGGTCACCCCTGGGAAGGAGCGCAGCCCACCCG
GCCCCTCCGCATCCGAGCAGGACGCCCGTCTCCTCTCCCTGAGGATTTCAGGTCTCCCTGTCCCAGGAGGCTTGTGCCAAGATGGCATCA
GCTGGAGACACCCAGGCAGGCCCACGGGATGCAGCAGATCAGAACTTCGACTATATGTTCAAACTGCTACTGATAGGCAACAGCAGTGTG
GGCAAGACTTCCTTCCTGTTCCGATACGCGGACGACTCCTTCACTCCCGCCTTCGTCAGTACTGTGGGCATCGATTTCAAGGTCAAGACC
GTCTACCGCCATGACAAGAGGATCAAGCTGCAGATCTGGGCTTGAAGGTGGCTGCAACTATGATTATATTGAAGTTTTCGATGGCCCCTA
CCGCAGTTCCCCTCTCATTGCTCGAGTTTGTGATGGGGCCAGAGGCTCCTTCACTTCTTCCTCCAACTTCATGTCCATTCGCTTCATCAG
TGACCACAGCATCACAAGGAGAGGGTTCCGGGCTGAGTACTACTCCAGTCCCTCCAATGACAGCACCAACCTGCTCTGTCTGCCAAATCA
CATGCAAGCCAGTGTGAGCAGGAGCTATCTCCAATCCTTGGGCTTTTCTGCCAGTGACCTTGTCATTTCCACCTGGAATGGATACTACGA
GTGTCGGCCCCAGATAACGCCGAACCTGGTGATATTCACAATTCCCTACTCAGGCTGCGGCACCTTCAAGCAGGCAGACAATGACACCAT
CGACTATTCCAACTTCCTCACAGCAGCTGTCTCAGGTGGCATCATCAAGAGGAGGACAGACCTCCGTATTCACGTCAGCTGCAGAATGCT
TCAGAACACCTGGGTCGACACCATGTACATTGCTAATGACACCATCCACGTTGCTAATAACACCATCCAGGTCGAGGAAGTCCAGTATGG
CAATTTTGACGTGAACATTTCCTTTTATACTTCCTCATCTTTCTTGTATCCTGTGACCAGCCGCCCTTACTACGTGGACCTGAACCAGGA
CTTGTACGTTCAGGCTGAAATCCTCCATTCTGATGCTGTACTGACCTTGTTTGTGGACACCTGCGTGGCATCACCATACTCCAATGACTT
CACGTCTTTGACTTATGATCTAATCCGGAGTGGATGCGTGAGGGATGACACCTACGGACCCTACTCCTCGCCATCTCTTCGCATTGCCCG
CTTCCGGTTCAGGGCCTTCCACTTCCTGAACCGCTTCCCCTCCGTGTACCTGCGTTGTAAAATGGTGGTGTGCAGAGCGTATGACCCCTC
TTCCCGCTGCTACCGAGGCTGTGTGTTGAGGTCGAAGAGGGATGTGGGCTCCTACCAGGAAAAGGTGGACGTCGTCCTGGGTCCCATCCA
GCTGCAGACCCCCCCACGCCGAGAAGAGGAGCCTCGGTAGGTGGTCGCTCTCAGACCCCACTGTCCACCGGGGCGCAGACCCCTGACTCG
GGGACTTGGGATGTTCCTCTTGGTGTCATATTCCAACTCAGATTGAGCCCTACATTGTGCTGCACCTGGTCATACGGAGTTGAATCAGAC
CTGGTTCCCGCCTCCCCCAAGGCTCATGGTCCTTGGAGGACCCGTTGCAGGGTGAGGTCAAGAGAGTTCTGACCTGGATGGCCCATAGAC
CTGACGTCCCAGAATCCATGCTTCTCATCTGCAAAATGAAAATGTCAATACTTACTTCTTAGCACTGTTGAGAGGGTTACTTACATAAAG

>71342_71342_2_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000338354_length(amino acids)=382AA_BP=23
MWASISRSRPSTAMTRGSSCRSGLEGGCNYDYIEVFDGPYRSSPLIARVCDGARGSFTSSSNFMSIRFISDHSITRRGFRAEYYSSPSND
STNLLCLPNHMQASVSRSYLQSLGFSASDLVISTWNGYYECRPQITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTD
LRIHVSCRMLQNTWVDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQAEILHSDAVLTLFVDT
CVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFRAFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQE

--------------------------------------------------------------
>71342_71342_3_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000344338_length(transcript)=1908nt_BP=489nt
CCTTCCTCCGCCTTCTGGGCGGAGCCCGCGCGGGATCCGGGTGGCTGCAGGCTGCTGGCTTCTGCGGCTGCGGGGTCGGGGTCGCGGCCA
GGGCCAAGCCGCAGCGAGTTCACAGGCGGAACCCCTGCAGGCGGCGCCCCCTACGCGAGGTCACCCCTGGGAAGGAGCGCAGCCCACCCG
GCCCCTCCGCATCCGAGCAGGACGCCCGTCTCCTCTCCCTGAGGATTTCAGGTCTCCCTGTCCCAGGAGGCTTGTGCCAAGATGGCATCA
GCTGGAGACACCCAGGCAGGCCCACGGGATGCAGCAGATCAGAACTTCGACTATATGTTCAAACTGCTACTGATAGGCAACAGCAGTGTG
GGCAAGACTTCCTTCCTGTTCCGATACGCGGACGACTCCTTCACTCCCGCCTTCGTCAGTACTGTGGGCATCGATTTCAAGGTCAAGACC
GTCTACCGCCATGACAAGAGGATCAAGCTGCAGATCTGGGCTTGAAGGTGGCTGCAACTATGATTATATTGAAGTTTTCGATGGCCCCTA
CCGCAGTTCCCCTCTCATTGCTCGAGTTTGTGATGGGGCCAGAGGCTCCTTCACTTCTTCCTCCAACTTCATGTCCATTCGCTTCATCAG
TGACCACAGCATCACAAGGAGAGGGTTCCGGGCTGAGTACTACTCCAGTCCCTCCAATGACAGCACCAACCTGCTCTGTCTGCCAAATCA
CATGCAAGCCAGTGTGAGCAGGAGCTATCTCCAATCCTTGGGCTTTTCTGCCAGTGACCTTGTCATTTCCACCTGGAATGGATACTACGA
GTGTCGGCCCCAGATAACGCCGAACCTGGTGATATTCACAATTCCCTACTCAGGCTGCGGCACCTTCAAGCAGGCAGACAATGACACCAT
CGACTATTCCAACTTCCTCACAGCAGCTGTCTCAGGTGGCATCATCAAGAGGAGGACAGACCTCCGTATTCACGTCAGCTGCAGAATGCT
TCAGAACACCTGGGTCGACACCATGTACATTGCTAATGACACCATCCACGTTGCTAATAACACCATCCAGGTCGAGGAAGTCCAGTATGG
CAATTTTGACGTGAACATTTCCTTTTATACTTCCTCATCTTTCTTGTATCCTGTGACCAGCCGCCCTTACTACGTGGACCTGAACCAGGA
CTTGTACGTTCAGGCTGAAATCCTCCATTCTGATGCTGTACTGACCTTGTTTGTGGACACCTGCGTGGCATCACCATACTCCAATGACTT
CACGTCTTTGACTTATGATCTAATCCGGAGTGGATGCGTGAGGGATGACACCTACGGACCCTACTCCTCGCCATCTCTTCGCATTGCCCG
CTTCCGGTTCAGGGCCTTCCACTTCCTGAACCGCTTCCCCTCCGTGTACCTGCGTTGTAAAATGGTGGTGTGCAGAGCGTATGACCCCTC
TTCCCGCTGCTACCGAGGCTGTGTGTTGAGGTCGAAGAGGGATGTGGGCTCCTACCAGGAAAAGGTGGACGTCGTCCTGGGTCCCATCCA
GCTGCAGACCCCCCCACGCCGAGAAGAGGAGCCTCGGTAGGTGGTCGCTCTCAGACCCCACTGTCCACCGGGGCGCAGACCCCTGACTCG
GGGACTTGGGATGTTCCTCTTGGTGTCATATTCCAACTCAGATTGAGCCCTACATTGTGCTGCACCTGGTCATACGGAGTTGAATCAGAC
CTGGTTCCCGCCTCCCCCAAGGCTCATGGTCCTTGGAGGACCCGTTGCAGGGTGAGGTCAAGAGAGTTCTGACCTGGATGGCCCATAGAC
CTGACGTCCCAGAATCCATGCTTCTCATCTGCAAAATGAAAATGTCAATACTTACTTCTTAGCACTGTTGAGAGGGTTACTTACATAAAG

>71342_71342_3_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000344338_length(amino acids)=382AA_BP=23
MWASISRSRPSTAMTRGSSCRSGLEGGCNYDYIEVFDGPYRSSPLIARVCDGARGSFTSSSNFMSIRFISDHSITRRGFRAEYYSSPSND
STNLLCLPNHMQASVSRSYLQSLGFSASDLVISTWNGYYECRPQITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTD
LRIHVSCRMLQNTWVDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQAEILHSDAVLTLFVDT
CVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFRAFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQE

--------------------------------------------------------------
>71342_71342_4_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000359586_length(transcript)=1908nt_BP=489nt
CCTTCCTCCGCCTTCTGGGCGGAGCCCGCGCGGGATCCGGGTGGCTGCAGGCTGCTGGCTTCTGCGGCTGCGGGGTCGGGGTCGCGGCCA
GGGCCAAGCCGCAGCGAGTTCACAGGCGGAACCCCTGCAGGCGGCGCCCCCTACGCGAGGTCACCCCTGGGAAGGAGCGCAGCCCACCCG
GCCCCTCCGCATCCGAGCAGGACGCCCGTCTCCTCTCCCTGAGGATTTCAGGTCTCCCTGTCCCAGGAGGCTTGTGCCAAGATGGCATCA
GCTGGAGACACCCAGGCAGGCCCACGGGATGCAGCAGATCAGAACTTCGACTATATGTTCAAACTGCTACTGATAGGCAACAGCAGTGTG
GGCAAGACTTCCTTCCTGTTCCGATACGCGGACGACTCCTTCACTCCCGCCTTCGTCAGTACTGTGGGCATCGATTTCAAGGTCAAGACC
GTCTACCGCCATGACAAGAGGATCAAGCTGCAGATCTGGGCTTGAAGGTGGCTGCAACTATGATTATATTGAAGTTTTCGATGGCCCCTA
CCGCAGTTCCCCTCTCATTGCTCGAGTTTGTGATGGGGCCAGAGGCTCCTTCACTTCTTCCTCCAACTTCATGTCCATTCGCTTCATCAG
TGACCACAGCATCACAAGGAGAGGGTTCCGGGCTGAGTACTACTCCAGTCCCTCCAATGACAGCACCAACCTGCTCTGTCTGCCAAATCA
CATGCAAGCCAGTGTGAGCAGGAGCTATCTCCAATCCTTGGGCTTTTCTGCCAGTGACCTTGTCATTTCCACCTGGAATGGATACTACGA
GTGTCGGCCCCAGATAACGCCGAACCTGGTGATATTCACAATTCCCTACTCAGGCTGCGGCACCTTCAAGCAGGCAGACAATGACACCAT
CGACTATTCCAACTTCCTCACAGCAGCTGTCTCAGGTGGCATCATCAAGAGGAGGACAGACCTCCGTATTCACGTCAGCTGCAGAATGCT
TCAGAACACCTGGGTCGACACCATGTACATTGCTAATGACACCATCCACGTTGCTAATAACACCATCCAGGTCGAGGAAGTCCAGTATGG
CAATTTTGACGTGAACATTTCCTTTTATACTTCCTCATCTTTCTTGTATCCTGTGACCAGCCGCCCTTACTACGTGGACCTGAACCAGGA
CTTGTACGTTCAGGCTGAAATCCTCCATTCTGATGCTGTACTGACCTTGTTTGTGGACACCTGCGTGGCATCACCATACTCCAATGACTT
CACGTCTTTGACTTATGATCTAATCCGGAGTGGATGCGTGAGGGATGACACCTACGGACCCTACTCCTCGCCATCTCTTCGCATTGCCCG
CTTCCGGTTCAGGGCCTTCCACTTCCTGAACCGCTTCCCCTCCGTGTACCTGCGTTGTAAAATGGTGGTGTGCAGAGCGTATGACCCCTC
TTCCCGCTGCTACCGAGGCTGTGTGTTGAGGTCGAAGAGGGATGTGGGCTCCTACCAGGAAAAGGTGGACGTCGTCCTGGGTCCCATCCA
GCTGCAGACCCCCCCACGCCGAGAAGAGGAGCCTCGGTAGGTGGTCGCTCTCAGACCCCACTGTCCACCGGGGCGCAGACCCCTGACTCG
GGGACTTGGGATGTTCCTCTTGGTGTCATATTCCAACTCAGATTGAGCCCTACATTGTGCTGCACCTGGTCATACGGAGTTGAATCAGAC
CTGGTTCCCGCCTCCCCCAAGGCTCATGGTCCTTGGAGGACCCGTTGCAGGGTGAGGTCAAGAGAGTTCTGACCTGGATGGCCCATAGAC
CTGACGTCCCAGAATCCATGCTTCTCATCTGCAAAATGAAAATGTCAATACTTACTTCTTAGCACTGTTGAGAGGGTTACTTACATAAAG

>71342_71342_4_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000359586_length(amino acids)=382AA_BP=23
MWASISRSRPSTAMTRGSSCRSGLEGGCNYDYIEVFDGPYRSSPLIARVCDGARGSFTSSSNFMSIRFISDHSITRRGFRAEYYSSPSND
STNLLCLPNHMQASVSRSYLQSLGFSASDLVISTWNGYYECRPQITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTD
LRIHVSCRMLQNTWVDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQAEILHSDAVLTLFVDT
CVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFRAFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQE

--------------------------------------------------------------
>71342_71342_5_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000368909_length(transcript)=1908nt_BP=489nt
CCTTCCTCCGCCTTCTGGGCGGAGCCCGCGCGGGATCCGGGTGGCTGCAGGCTGCTGGCTTCTGCGGCTGCGGGGTCGGGGTCGCGGCCA
GGGCCAAGCCGCAGCGAGTTCACAGGCGGAACCCCTGCAGGCGGCGCCCCCTACGCGAGGTCACCCCTGGGAAGGAGCGCAGCCCACCCG
GCCCCTCCGCATCCGAGCAGGACGCCCGTCTCCTCTCCCTGAGGATTTCAGGTCTCCCTGTCCCAGGAGGCTTGTGCCAAGATGGCATCA
GCTGGAGACACCCAGGCAGGCCCACGGGATGCAGCAGATCAGAACTTCGACTATATGTTCAAACTGCTACTGATAGGCAACAGCAGTGTG
GGCAAGACTTCCTTCCTGTTCCGATACGCGGACGACTCCTTCACTCCCGCCTTCGTCAGTACTGTGGGCATCGATTTCAAGGTCAAGACC
GTCTACCGCCATGACAAGAGGATCAAGCTGCAGATCTGGGCTTGAAGGTGGCTGCAACTATGATTATATTGAAGTTTTCGATGGCCCCTA
CCGCAGTTCCCCTCTCATTGCTCGAGTTTGTGATGGGGCCAGAGGCTCCTTCACTTCTTCCTCCAACTTCATGTCCATTCGCTTCATCAG
TGACCACAGCATCACAAGGAGAGGGTTCCGGGCTGAGTACTACTCCAGTCCCTCCAATGACAGCACCAACCTGCTCTGTCTGCCAAATCA
CATGCAAGCCAGTGTGAGCAGGAGCTATCTCCAATCCTTGGGCTTTTCTGCCAGTGACCTTGTCATTTCCACCTGGAATGGATACTACGA
GTGTCGGCCCCAGATAACGCCGAACCTGGTGATATTCACAATTCCCTACTCAGGCTGCGGCACCTTCAAGCAGGCAGACAATGACACCAT
CGACTATTCCAACTTCCTCACAGCAGCTGTCTCAGGTGGCATCATCAAGAGGAGGACAGACCTCCGTATTCACGTCAGCTGCAGAATGCT
TCAGAACACCTGGGTCGACACCATGTACATTGCTAATGACACCATCCACGTTGCTAATAACACCATCCAGGTCGAGGAAGTCCAGTATGG
CAATTTTGACGTGAACATTTCCTTTTATACTTCCTCATCTTTCTTGTATCCTGTGACCAGCCGCCCTTACTACGTGGACCTGAACCAGGA
CTTGTACGTTCAGGCTGAAATCCTCCATTCTGATGCTGTACTGACCTTGTTTGTGGACACCTGCGTGGCATCACCATACTCCAATGACTT
CACGTCTTTGACTTATGATCTAATCCGGAGTGGATGCGTGAGGGATGACACCTACGGACCCTACTCCTCGCCATCTCTTCGCATTGCCCG
CTTCCGGTTCAGGGCCTTCCACTTCCTGAACCGCTTCCCCTCCGTGTACCTGCGTTGTAAAATGGTGGTGTGCAGAGCGTATGACCCCTC
TTCCCGCTGCTACCGAGGCTGTGTGTTGAGGTCGAAGAGGGATGTGGGCTCCTACCAGGAAAAGGTGGACGTCGTCCTGGGTCCCATCCA
GCTGCAGACCCCCCCACGCCGAGAAGAGGAGCCTCGGTAGGTGGTCGCTCTCAGACCCCACTGTCCACCGGGGCGCAGACCCCTGACTCG
GGGACTTGGGATGTTCCTCTTGGTGTCATATTCCAACTCAGATTGAGCCCTACATTGTGCTGCACCTGGTCATACGGAGTTGAATCAGAC
CTGGTTCCCGCCTCCCCCAAGGCTCATGGTCCTTGGAGGACCCGTTGCAGGGTGAGGTCAAGAGAGTTCTGACCTGGATGGCCCATAGAC
CTGACGTCCCAGAATCCATGCTTCTCATCTGCAAAATGAAAATGTCAATACTTACTTCTTAGCACTGTTGAGAGGGTTACTTACATAAAG

>71342_71342_5_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000368909_length(amino acids)=382AA_BP=23
MWASISRSRPSTAMTRGSSCRSGLEGGCNYDYIEVFDGPYRSSPLIARVCDGARGSFTSSSNFMSIRFISDHSITRRGFRAEYYSSPSND
STNLLCLPNHMQASVSRSYLQSLGFSASDLVISTWNGYYECRPQITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTD
LRIHVSCRMLQNTWVDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQAEILHSDAVLTLFVDT
CVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFRAFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQE

--------------------------------------------------------------
>71342_71342_6_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000368955_length(transcript)=1908nt_BP=489nt
CCTTCCTCCGCCTTCTGGGCGGAGCCCGCGCGGGATCCGGGTGGCTGCAGGCTGCTGGCTTCTGCGGCTGCGGGGTCGGGGTCGCGGCCA
GGGCCAAGCCGCAGCGAGTTCACAGGCGGAACCCCTGCAGGCGGCGCCCCCTACGCGAGGTCACCCCTGGGAAGGAGCGCAGCCCACCCG
GCCCCTCCGCATCCGAGCAGGACGCCCGTCTCCTCTCCCTGAGGATTTCAGGTCTCCCTGTCCCAGGAGGCTTGTGCCAAGATGGCATCA
GCTGGAGACACCCAGGCAGGCCCACGGGATGCAGCAGATCAGAACTTCGACTATATGTTCAAACTGCTACTGATAGGCAACAGCAGTGTG
GGCAAGACTTCCTTCCTGTTCCGATACGCGGACGACTCCTTCACTCCCGCCTTCGTCAGTACTGTGGGCATCGATTTCAAGGTCAAGACC
GTCTACCGCCATGACAAGAGGATCAAGCTGCAGATCTGGGCTTGAAGGTGGCTGCAACTATGATTATATTGAAGTTTTCGATGGCCCCTA
CCGCAGTTCCCCTCTCATTGCTCGAGTTTGTGATGGGGCCAGAGGCTCCTTCACTTCTTCCTCCAACTTCATGTCCATTCGCTTCATCAG
TGACCACAGCATCACAAGGAGAGGGTTCCGGGCTGAGTACTACTCCAGTCCCTCCAATGACAGCACCAACCTGCTCTGTCTGCCAAATCA
CATGCAAGCCAGTGTGAGCAGGAGCTATCTCCAATCCTTGGGCTTTTCTGCCAGTGACCTTGTCATTTCCACCTGGAATGGATACTACGA
GTGTCGGCCCCAGATAACGCCGAACCTGGTGATATTCACAATTCCCTACTCAGGCTGCGGCACCTTCAAGCAGGCAGACAATGACACCAT
CGACTATTCCAACTTCCTCACAGCAGCTGTCTCAGGTGGCATCATCAAGAGGAGGACAGACCTCCGTATTCACGTCAGCTGCAGAATGCT
TCAGAACACCTGGGTCGACACCATGTACATTGCTAATGACACCATCCACGTTGCTAATAACACCATCCAGGTCGAGGAAGTCCAGTATGG
CAATTTTGACGTGAACATTTCCTTTTATACTTCCTCATCTTTCTTGTATCCTGTGACCAGCCGCCCTTACTACGTGGACCTGAACCAGGA
CTTGTACGTTCAGGCTGAAATCCTCCATTCTGATGCTGTACTGACCTTGTTTGTGGACACCTGCGTGGCATCACCATACTCCAATGACTT
CACGTCTTTGACTTATGATCTAATCCGGAGTGGATGCGTGAGGGATGACACCTACGGACCCTACTCCTCGCCATCTCTTCGCATTGCCCG
CTTCCGGTTCAGGGCCTTCCACTTCCTGAACCGCTTCCCCTCCGTGTACCTGCGTTGTAAAATGGTGGTGTGCAGAGCGTATGACCCCTC
TTCCCGCTGCTACCGAGGCTGTGTGTTGAGGTCGAAGAGGGATGTGGGCTCCTACCAGGAAAAGGTGGACGTCGTCCTGGGTCCCATCCA
GCTGCAGACCCCCCCACGCCGAGAAGAGGAGCCTCGGTAGGTGGTCGCTCTCAGACCCCACTGTCCACCGGGGCGCAGACCCCTGACTCG
GGGACTTGGGATGTTCCTCTTGGTGTCATATTCCAACTCAGATTGAGCCCTACATTGTGCTGCACCTGGTCATACGGAGTTGAATCAGAC
CTGGTTCCCGCCTCCCCCAAGGCTCATGGTCCTTGGAGGACCCGTTGCAGGGTGAGGTCAAGAGAGTTCTGACCTGGATGGCCCATAGAC
CTGACGTCCCAGAATCCATGCTTCTCATCTGCAAAATGAAAATGTCAATACTTACTTCTTAGCACTGTTGAGAGGGTTACTTACATAAAG

>71342_71342_6_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000368955_length(amino acids)=382AA_BP=23
MWASISRSRPSTAMTRGSSCRSGLEGGCNYDYIEVFDGPYRSSPLIARVCDGARGSFTSSSNFMSIRFISDHSITRRGFRAEYYSSPSND
STNLLCLPNHMQASVSRSYLQSLGFSASDLVISTWNGYYECRPQITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTD
LRIHVSCRMLQNTWVDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQAEILHSDAVLTLFVDT
CVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFRAFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQE

--------------------------------------------------------------
>71342_71342_7_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000368956_length(transcript)=1908nt_BP=489nt
CCTTCCTCCGCCTTCTGGGCGGAGCCCGCGCGGGATCCGGGTGGCTGCAGGCTGCTGGCTTCTGCGGCTGCGGGGTCGGGGTCGCGGCCA
GGGCCAAGCCGCAGCGAGTTCACAGGCGGAACCCCTGCAGGCGGCGCCCCCTACGCGAGGTCACCCCTGGGAAGGAGCGCAGCCCACCCG
GCCCCTCCGCATCCGAGCAGGACGCCCGTCTCCTCTCCCTGAGGATTTCAGGTCTCCCTGTCCCAGGAGGCTTGTGCCAAGATGGCATCA
GCTGGAGACACCCAGGCAGGCCCACGGGATGCAGCAGATCAGAACTTCGACTATATGTTCAAACTGCTACTGATAGGCAACAGCAGTGTG
GGCAAGACTTCCTTCCTGTTCCGATACGCGGACGACTCCTTCACTCCCGCCTTCGTCAGTACTGTGGGCATCGATTTCAAGGTCAAGACC
GTCTACCGCCATGACAAGAGGATCAAGCTGCAGATCTGGGCTTGAAGGTGGCTGCAACTATGATTATATTGAAGTTTTCGATGGCCCCTA
CCGCAGTTCCCCTCTCATTGCTCGAGTTTGTGATGGGGCCAGAGGCTCCTTCACTTCTTCCTCCAACTTCATGTCCATTCGCTTCATCAG
TGACCACAGCATCACAAGGAGAGGGTTCCGGGCTGAGTACTACTCCAGTCCCTCCAATGACAGCACCAACCTGCTCTGTCTGCCAAATCA
CATGCAAGCCAGTGTGAGCAGGAGCTATCTCCAATCCTTGGGCTTTTCTGCCAGTGACCTTGTCATTTCCACCTGGAATGGATACTACGA
GTGTCGGCCCCAGATAACGCCGAACCTGGTGATATTCACAATTCCCTACTCAGGCTGCGGCACCTTCAAGCAGGCAGACAATGACACCAT
CGACTATTCCAACTTCCTCACAGCAGCTGTCTCAGGTGGCATCATCAAGAGGAGGACAGACCTCCGTATTCACGTCAGCTGCAGAATGCT
TCAGAACACCTGGGTCGACACCATGTACATTGCTAATGACACCATCCACGTTGCTAATAACACCATCCAGGTCGAGGAAGTCCAGTATGG
CAATTTTGACGTGAACATTTCCTTTTATACTTCCTCATCTTTCTTGTATCCTGTGACCAGCCGCCCTTACTACGTGGACCTGAACCAGGA
CTTGTACGTTCAGGCTGAAATCCTCCATTCTGATGCTGTACTGACCTTGTTTGTGGACACCTGCGTGGCATCACCATACTCCAATGACTT
CACGTCTTTGACTTATGATCTAATCCGGAGTGGATGCGTGAGGGATGACACCTACGGACCCTACTCCTCGCCATCTCTTCGCATTGCCCG
CTTCCGGTTCAGGGCCTTCCACTTCCTGAACCGCTTCCCCTCCGTGTACCTGCGTTGTAAAATGGTGGTGTGCAGAGCGTATGACCCCTC
TTCCCGCTGCTACCGAGGCTGTGTGTTGAGGTCGAAGAGGGATGTGGGCTCCTACCAGGAAAAGGTGGACGTCGTCCTGGGTCCCATCCA
GCTGCAGACCCCCCCACGCCGAGAAGAGGAGCCTCGGTAGGTGGTCGCTCTCAGACCCCACTGTCCACCGGGGCGCAGACCCCTGACTCG
GGGACTTGGGATGTTCCTCTTGGTGTCATATTCCAACTCAGATTGAGCCCTACATTGTGCTGCACCTGGTCATACGGAGTTGAATCAGAC
CTGGTTCCCGCCTCCCCCAAGGCTCATGGTCCTTGGAGGACCCGTTGCAGGGTGAGGTCAAGAGAGTTCTGACCTGGATGGCCCATAGAC
CTGACGTCCCAGAATCCATGCTTCTCATCTGCAAAATGAAAATGTCAATACTTACTTCTTAGCACTGTTGAGAGGGTTACTTACATAAAG

>71342_71342_7_RAB3D-DMBT1_RAB3D_chr19_11447848_ENST00000222120_DMBT1_chr10_124395507_ENST00000368956_length(amino acids)=382AA_BP=23
MWASISRSRPSTAMTRGSSCRSGLEGGCNYDYIEVFDGPYRSSPLIARVCDGARGSFTSSSNFMSIRFISDHSITRRGFRAEYYSSPSND
STNLLCLPNHMQASVSRSYLQSLGFSASDLVISTWNGYYECRPQITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTD
LRIHVSCRMLQNTWVDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQAEILHSDAVLTLFVDT
CVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFRAFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQE

--------------------------------------------------------------

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Fusion Gene PPI Analysis for RAB3D-DMBT1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for RAB3D-DMBT1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for RAB3D-DMBT1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource