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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:RAD51D-SLCO6A1 (FusionGDB2 ID:71770)

Fusion Gene Summary for RAD51D-SLCO6A1

check button Fusion gene summary
Fusion gene informationFusion gene name: RAD51D-SLCO6A1
Fusion gene ID: 71770
HgeneTgene
Gene symbol

RAD51D

SLCO6A1

Gene ID

5892

133482

Gene nameRAD51 paralog Dsolute carrier organic anion transporter family member 6A1
SynonymsBROVCA4|R51H3|RAD51L3|TRADCT48|GST|OATP-I|OATP6A1|OATPY
Cytomap

17q12

5q21.1

Type of geneprotein-codingprotein-coding
DescriptionDNA repair protein RAD51 homolog 4RAD51 homolog DRAD51-like protein 3recombination repair proteinsolute carrier organic anion transporter family member 6A1cancer/testis antigen 48gonad-specific transporterorganic anion-transporting polypeptide Isolute carrier family 21 member 19testicular tissue protein Li 174testis-specific organic anion trans
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000335858, ENST00000345365, 
ENST00000360276, ENST00000394589, 
ENST00000460118, ENST00000590016, 
ENST00000590380, ENST00000357906, 
ENST00000514551, ENST00000379807, 
ENST00000379810, ENST00000389019, 
ENST00000506729, ENST00000513675, 
Fusion gene scores* DoF score4 X 3 X 4=484 X 2 X 4=32
# samples 45
** MAII scorelog2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(5/32*10)=0.643856189774725
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: RAD51D [Title/Abstract] AND SLCO6A1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointRAD51D(33433405)-SLCO6A1(101748847), # samples:3
Anticipated loss of major functional domain due to fusion event.RAD51D-SLCO6A1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
RAD51D-SLCO6A1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneRAD51D

GO:0042148

strand invasion

11834724


check buttonFusion gene breakpoints across RAD51D (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across SLCO6A1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LUSCTCGA-66-2754-01ARAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
ChimerDB4LUSCTCGA-66-2754RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-


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Fusion Gene ORF analysis for RAD51D-SLCO6A1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000335858ENST00000514551RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5CDS-intronENST00000345365ENST00000514551RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5CDS-intronENST00000360276ENST00000514551RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5CDS-intronENST00000394589ENST00000514551RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5CDS-intronENST00000460118ENST00000514551RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5CDS-intronENST00000590016ENST00000514551RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5UTR-3CDSENST00000590380ENST00000379807RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5UTR-3CDSENST00000590380ENST00000379810RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5UTR-3CDSENST00000590380ENST00000389019RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5UTR-3CDSENST00000590380ENST00000506729RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5UTR-3CDSENST00000590380ENST00000513675RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
5UTR-intronENST00000590380ENST00000514551RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000335858ENST00000379807RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000335858ENST00000379810RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000335858ENST00000389019RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000335858ENST00000506729RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000335858ENST00000513675RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000345365ENST00000379807RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000345365ENST00000379810RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000345365ENST00000389019RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000345365ENST00000506729RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000345365ENST00000513675RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000360276ENST00000379807RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000360276ENST00000379810RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000360276ENST00000389019RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000360276ENST00000506729RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000360276ENST00000513675RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000460118ENST00000379807RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000460118ENST00000379810RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000460118ENST00000389019RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000460118ENST00000506729RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000460118ENST00000513675RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000590016ENST00000379807RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000590016ENST00000379810RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000590016ENST00000389019RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000590016ENST00000506729RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
Frame-shiftENST00000590016ENST00000513675RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
In-frameENST00000394589ENST00000379807RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
In-frameENST00000394589ENST00000379810RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
In-frameENST00000394589ENST00000389019RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
In-frameENST00000394589ENST00000506729RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
In-frameENST00000394589ENST00000513675RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
intron-3CDSENST00000357906ENST00000379807RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
intron-3CDSENST00000357906ENST00000379810RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
intron-3CDSENST00000357906ENST00000389019RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
intron-3CDSENST00000357906ENST00000506729RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
intron-3CDSENST00000357906ENST00000513675RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-
intron-intronENST00000357906ENST00000514551RAD51Dchr17

33433405

-SLCO6A1chr5

101748847

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000394589RAD51Dchr1733433405-ENST00000506729SLCO6A1chr5101748847-17607156051402265
ENST00000394589RAD51Dchr1733433405-ENST00000379807SLCO6A1chr5101748847-15457156051402265
ENST00000394589RAD51Dchr1733433405-ENST00000389019SLCO6A1chr5101748847-15977156051402265
ENST00000394589RAD51Dchr1733433405-ENST00000513675SLCO6A1chr5101748847-15447156051402265
ENST00000394589RAD51Dchr1733433405-ENST00000379810SLCO6A1chr5101748847-15927156051402265

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000394589ENST00000506729RAD51Dchr1733433405-SLCO6A1chr5101748847-0.0024368130.99756324
ENST00000394589ENST00000379807RAD51Dchr1733433405-SLCO6A1chr5101748847-0.0035199210.99648005
ENST00000394589ENST00000389019RAD51Dchr1733433405-SLCO6A1chr5101748847-0.0035980690.9964019
ENST00000394589ENST00000513675RAD51Dchr1733433405-SLCO6A1chr5101748847-0.0035962130.9964038
ENST00000394589ENST00000379810RAD51Dchr1733433405-SLCO6A1chr5101748847-0.00375330.99624664

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Fusion Genomic Features for RAD51D-SLCO6A1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for RAD51D-SLCO6A1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:33433405/chr5:101748847)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000590016-610200_205212349.0Compositional biasNote=Poly-Val
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000345365-610107_114192329.0Nucleotide bindingATP
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000360276-59107_114147284.0Nucleotide bindingATP
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000394589-711107_114192329.0Nucleotide bindingATP
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000590016-610107_114212349.0Nucleotide bindingATP
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000335858-371_8380217.0RegionNote=preferentially binds ssDNA
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000345365-6101_83192329.0RegionNote=preferentially binds ssDNA
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000360276-591_83147284.0RegionNote=preferentially binds ssDNA
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000394589-7111_83192329.0RegionNote=preferentially binds ssDNA
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000590016-6101_83212349.0RegionNote=preferentially binds ssDNA
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714496_551490564.6666666666666DomainKazal-like
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613496_551428507.6666666666667DomainKazal-like
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714496_551490624.0DomainKazal-like
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714605_613490564.6666666666666Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714640_673490564.6666666666666Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714692_719490564.6666666666666Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613445_448428507.6666666666667Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613473_581428507.6666666666667Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613605_613428507.6666666666667Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613640_673428507.6666666666667Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613692_719428507.6666666666667Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714605_613490624.0Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714640_673490624.0Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714692_719490624.0Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714582_604490564.6666666666666TransmembraneHelical%3B Name%3D10
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714614_639490564.6666666666666TransmembraneHelical%3B Name%3D11
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714674_691490564.6666666666666TransmembraneHelical%3B Name%3D12
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613449_472428507.6666666666667TransmembraneHelical%3B Name%3D9
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613582_604428507.6666666666667TransmembraneHelical%3B Name%3D10
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613614_639428507.6666666666667TransmembraneHelical%3B Name%3D11
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613674_691428507.6666666666667TransmembraneHelical%3B Name%3D12
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714582_604490624.0TransmembraneHelical%3B Name%3D10
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714614_639490624.0TransmembraneHelical%3B Name%3D11
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714674_691490624.0TransmembraneHelical%3B Name%3D12

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000335858-37200_20580217.0Compositional biasNote=Poly-Val
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000345365-610200_205192329.0Compositional biasNote=Poly-Val
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000357906-14200_2050119.0Compositional biasNote=Poly-Val
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000360276-59200_205147284.0Compositional biasNote=Poly-Val
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000394589-711200_205192329.0Compositional biasNote=Poly-Val
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000335858-37107_11480217.0Nucleotide bindingATP
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000357906-14107_1140119.0Nucleotide bindingATP
HgeneRAD51Dchr17:33433405chr5:101748847ENST00000357906-141_830119.0RegionNote=preferentially binds ssDNA
TgeneSLCO6A1chr17:33433405chr5:101748847ENST0000037980771489_118490564.6666666666666Compositional biasNote=Cys-rich
TgeneSLCO6A1chr17:33433405chr5:101748847ENST0000038901961389_118428507.6666666666667Compositional biasNote=Cys-rich
TgeneSLCO6A1chr17:33433405chr5:101748847ENST0000050672971489_118490624.0Compositional biasNote=Cys-rich
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714127_145490564.6666666666666Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714167_171490564.6666666666666Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714197_223490564.6666666666666Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST000003798077141_106490564.6666666666666Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714255_274490564.6666666666666Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714296_311490564.6666666666666Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714337_378490564.6666666666666Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714401_420490564.6666666666666Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714445_448490564.6666666666666Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714473_581490564.6666666666666Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613127_145428507.6666666666667Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613167_171428507.6666666666667Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613197_223428507.6666666666667Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST000003890196131_106428507.6666666666667Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613255_274428507.6666666666667Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613296_311428507.6666666666667Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613337_378428507.6666666666667Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613401_420428507.6666666666667Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714127_145490624.0Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714167_171490624.0Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714197_223490624.0Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST000005067297141_106490624.0Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714255_274490624.0Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714296_311490624.0Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714337_378490624.0Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714401_420490624.0Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714445_448490624.0Topological domainCytoplasmic
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714473_581490624.0Topological domainExtracellular
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714107_126490564.6666666666666TransmembraneHelical%3B Name%3D1
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714146_166490564.6666666666666TransmembraneHelical%3B Name%3D2
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714172_196490564.6666666666666TransmembraneHelical%3B Name%3D3
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714224_254490564.6666666666666TransmembraneHelical%3B Name%3D4
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714275_295490564.6666666666666TransmembraneHelical%3B Name%3D5
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714312_336490564.6666666666666TransmembraneHelical%3B Name%3D6
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714379_400490564.6666666666666TransmembraneHelical%3B Name%3D7
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714421_444490564.6666666666666TransmembraneHelical%3B Name%3D8
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000379807714449_472490564.6666666666666TransmembraneHelical%3B Name%3D9
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613107_126428507.6666666666667TransmembraneHelical%3B Name%3D1
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613146_166428507.6666666666667TransmembraneHelical%3B Name%3D2
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613172_196428507.6666666666667TransmembraneHelical%3B Name%3D3
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613224_254428507.6666666666667TransmembraneHelical%3B Name%3D4
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613275_295428507.6666666666667TransmembraneHelical%3B Name%3D5
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613312_336428507.6666666666667TransmembraneHelical%3B Name%3D6
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613379_400428507.6666666666667TransmembraneHelical%3B Name%3D7
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000389019613421_444428507.6666666666667TransmembraneHelical%3B Name%3D8
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714107_126490624.0TransmembraneHelical%3B Name%3D1
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714146_166490624.0TransmembraneHelical%3B Name%3D2
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714172_196490624.0TransmembraneHelical%3B Name%3D3
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714224_254490624.0TransmembraneHelical%3B Name%3D4
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714275_295490624.0TransmembraneHelical%3B Name%3D5
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714312_336490624.0TransmembraneHelical%3B Name%3D6
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714379_400490624.0TransmembraneHelical%3B Name%3D7
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714421_444490624.0TransmembraneHelical%3B Name%3D8
TgeneSLCO6A1chr17:33433405chr5:101748847ENST00000506729714449_472490624.0TransmembraneHelical%3B Name%3D9


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Fusion Gene Sequence for RAD51D-SLCO6A1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>71770_71770_1_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000379807_length(transcript)=1545nt_BP=715nt
CGGTGTGTGTGTTGCGGCAGAAGCCAGCGCGCCTGTGTCCTCTCTAGGAAGGGGTAGGGGAGGGGCGTCTGGAGAGGACCCCCCGCGAAT
GCCCACGTGACGTGCAGTCCCCCTGGGGCTGTTCCGGCCTGCGGGGAACATGGGCGTGCTCAGGGTCGGACTGTGCCCTGGCCTTACCGA
GGAGATGATCCAGCTTCTCAGGAGCCACAGGATCAAGACAGTGGTGGACCTGGTTTCTGCAGACCTGGAAGAGGTAGCTCAGAAATGTGG
CTTGTCTTACAAGGCCCTGGTTGCCCTGAGGCGGGTGCTGCTGGCTCAGTTCTCGGCTTTCCCCGTGAATGGCGCTGATCTCTACGAGGA
ACTGAAGACCTCCACTGCCATCCTGTCCACTGGCATTGGCAGTCTTGATAAACTGCTTGATGCTGGTCTCTATACTGGAGAAGTGACTGA
AATTGTAGGAGGCCCAGGTAGCGGCAAAACTCAGGTATGTCTCTGTATGGCAGCAAATGTGGCCCATGGCCTGCAGCAAAACGTCCTATA
TGTAGATTCCAATGGAGGGCTGACAGCTTCCCGCCTCCTCCAGCTGCTTCAGGCTAAAACCCAGGATGAGGAGGAACAGGCAGAAGCTCT
CCGGAGGATCCAGGTGGTGCATGCATTTGACATCTTCCAGATGCTGGATGTGCTGCAGGAGCTCCGAGGCACTGTGGCCCAGCAGAACAG
GGAAGTTGGGAAACCTCACGGCTCCTTGCAATGAAAAATGTAGATGCTCATCTTCAATTTATTCTTCTATATGTGGAAGAGATGATATTG
AATATTTTTCTCCCTGCTTTGCAGGGTGTACATATTCTAAAGCACAAAACCAAAAAAAGATGTACTACAATTGTTCTTGCATTAAAGAAG
GATTAATAACTGCAGATGCAGAAGGTGATTTTATTGATGCCAGACCCGGGAAATGTGATGCAAAGTGCTATAAGTTACCTTTGTTCATTG
CTTTTATCTTTTCTACACTTATATTTTCTGGTTTTTCTGGTGTACCAATCGTCTTGGCCATGACGCGGGTTGTACCTGACAAACTGCGTT
CTCTGGCCTTGGGTGTAAGCTATGTGATTTTGAGAATATTTGGGACTATTCCTGGACCATCAATCTTTAAAATGTCAGGAGAAACTTCTT
GTATTTTACGGGATGTTAATAAATGTGGACACACAGGACGTTGTTGGATATATAACAAGACAAAAATGGCTTTCTTATTGGTAGGAATAT
GTTTTCTTTGCAAACTATGCACTATCATCTTCACTACTATTGCATTTTTCATATACAAACGTCGTCTAAATGAGAACACTGACTTCCCAG
ATGTAACTGTGAAGAATCCAAAAGTTAAGAAAAAAGAAGAAACTGACTTGTAACTGGATCATCATTGTATTCTCCAAGATTTGTTTCTGT
GCCCAACTTTCAGAAGAGGAAAATCACACATTATGTTTACATAAGTAGCAAAAATATATTTATGGTGATCTGCATTTTCATAATAAAGTG

>71770_71770_1_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000379807_length(amino acids)=265AA_BP=36
MRRNRQKLSGGSRWCMHLTSSRCWMCCRSSEALWPSRTGKLGNLTAPCNEKCRCSSSIYSSICGRDDIEYFSPCFAGCTYSKAQNQKKMY
YNCSCIKEGLITADAEGDFIDARPGKCDAKCYKLPLFIAFIFSTLIFSGFSGVPIVLAMTRVVPDKLRSLALGVSYVILRIFGTIPGPSI

--------------------------------------------------------------
>71770_71770_2_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000379810_length(transcript)=1592nt_BP=715nt
CGGTGTGTGTGTTGCGGCAGAAGCCAGCGCGCCTGTGTCCTCTCTAGGAAGGGGTAGGGGAGGGGCGTCTGGAGAGGACCCCCCGCGAAT
GCCCACGTGACGTGCAGTCCCCCTGGGGCTGTTCCGGCCTGCGGGGAACATGGGCGTGCTCAGGGTCGGACTGTGCCCTGGCCTTACCGA
GGAGATGATCCAGCTTCTCAGGAGCCACAGGATCAAGACAGTGGTGGACCTGGTTTCTGCAGACCTGGAAGAGGTAGCTCAGAAATGTGG
CTTGTCTTACAAGGCCCTGGTTGCCCTGAGGCGGGTGCTGCTGGCTCAGTTCTCGGCTTTCCCCGTGAATGGCGCTGATCTCTACGAGGA
ACTGAAGACCTCCACTGCCATCCTGTCCACTGGCATTGGCAGTCTTGATAAACTGCTTGATGCTGGTCTCTATACTGGAGAAGTGACTGA
AATTGTAGGAGGCCCAGGTAGCGGCAAAACTCAGGTATGTCTCTGTATGGCAGCAAATGTGGCCCATGGCCTGCAGCAAAACGTCCTATA
TGTAGATTCCAATGGAGGGCTGACAGCTTCCCGCCTCCTCCAGCTGCTTCAGGCTAAAACCCAGGATGAGGAGGAACAGGCAGAAGCTCT
CCGGAGGATCCAGGTGGTGCATGCATTTGACATCTTCCAGATGCTGGATGTGCTGCAGGAGCTCCGAGGCACTGTGGCCCAGCAGAACAG
GGAAGTTGGGAAACCTCACGGCTCCTTGCAATGAAAAATGTAGATGCTCATCTTCAATTTATTCTTCTATATGTGGAAGAGATGATATTG
AATATTTTTCTCCCTGCTTTGCAGGGTGTACATATTCTAAAGCACAAAACCAAAAAAAGATGTACTACAATTGTTCTTGCATTAAAGAAG
GATTAATAACTGCAGATGCAGAAGGTGATTTTATTGATGCCAGACCCGGGAAATGTGATGCAAAGTGCTATAAGTTACCTTTGTTCATTG
CTTTTATCTTTTCTACACTTATATTTTCTGGTTTTTCTGGTGTACCAATCGTCTTGGCCATGACGCGGGTTGTACCTGACAAACTGCGTT
CTCTGGCCTTGGGTGTAAGCTATGTGATTTTGAGAATATTTGGGACTATTCCTGGACCATCAATCTTTAAAATGTCAGGAGAAACTTCTT
GTATTTTACGGGATGTTAATAAATGTGGACACACAGGACGTTGTTGGATATATAACAAGACAAAAATGGCTTTCTTATTGGTAGGAATAT
GTTTTCTTTGCAAACTATGCACTATCATCTTCACTACTATTGCATTTTTCATATACAAACGTCGTCTAAATGAGAACACTGACTTCCCAG
ATGTAACTGTGAAGAATCCAAAAGTTAAGAAAAAAGAAGAAACTGACTTGTAACTGGATCATCATTGTGATTGCAGATCATTTGAGGATC
AGAGTGTGAAAACGAGTTTCTCTTTTACAGATTCTCCAAGATTTGTTTCTGTGCCCAACTTTCAGAAGAGGAAAATCACACATTATGTTT

>71770_71770_2_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000379810_length(amino acids)=265AA_BP=36
MRRNRQKLSGGSRWCMHLTSSRCWMCCRSSEALWPSRTGKLGNLTAPCNEKCRCSSSIYSSICGRDDIEYFSPCFAGCTYSKAQNQKKMY
YNCSCIKEGLITADAEGDFIDARPGKCDAKCYKLPLFIAFIFSTLIFSGFSGVPIVLAMTRVVPDKLRSLALGVSYVILRIFGTIPGPSI

--------------------------------------------------------------
>71770_71770_3_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000389019_length(transcript)=1597nt_BP=715nt
CGGTGTGTGTGTTGCGGCAGAAGCCAGCGCGCCTGTGTCCTCTCTAGGAAGGGGTAGGGGAGGGGCGTCTGGAGAGGACCCCCCGCGAAT
GCCCACGTGACGTGCAGTCCCCCTGGGGCTGTTCCGGCCTGCGGGGAACATGGGCGTGCTCAGGGTCGGACTGTGCCCTGGCCTTACCGA
GGAGATGATCCAGCTTCTCAGGAGCCACAGGATCAAGACAGTGGTGGACCTGGTTTCTGCAGACCTGGAAGAGGTAGCTCAGAAATGTGG
CTTGTCTTACAAGGCCCTGGTTGCCCTGAGGCGGGTGCTGCTGGCTCAGTTCTCGGCTTTCCCCGTGAATGGCGCTGATCTCTACGAGGA
ACTGAAGACCTCCACTGCCATCCTGTCCACTGGCATTGGCAGTCTTGATAAACTGCTTGATGCTGGTCTCTATACTGGAGAAGTGACTGA
AATTGTAGGAGGCCCAGGTAGCGGCAAAACTCAGGTATGTCTCTGTATGGCAGCAAATGTGGCCCATGGCCTGCAGCAAAACGTCCTATA
TGTAGATTCCAATGGAGGGCTGACAGCTTCCCGCCTCCTCCAGCTGCTTCAGGCTAAAACCCAGGATGAGGAGGAACAGGCAGAAGCTCT
CCGGAGGATCCAGGTGGTGCATGCATTTGACATCTTCCAGATGCTGGATGTGCTGCAGGAGCTCCGAGGCACTGTGGCCCAGCAGAACAG
GGAAGTTGGGAAACCTCACGGCTCCTTGCAATGAAAAATGTAGATGCTCATCTTCAATTTATTCTTCTATATGTGGAAGAGATGATATTG
AATATTTTTCTCCCTGCTTTGCAGGGTGTACATATTCTAAAGCACAAAACCAAAAAAAGATGTACTACAATTGTTCTTGCATTAAAGAAG
GATTAATAACTGCAGATGCAGAAGGTGATTTTATTGATGCCAGACCCGGGAAATGTGATGCAAAGTGCTATAAGTTACCTTTGTTCATTG
CTTTTATCTTTTCTACACTTATATTTTCTGGTTTTTCTGGTGTACCAATCGTCTTGGCCATGACGCGGGTTGTACCTGACAAACTGCGTT
CTCTGGCCTTGGGTGTAAGCTATGTGATTTTGAGAATATTTGGGACTATTCCTGGACCATCAATCTTTAAAATGTCAGGAGAAACTTCTT
GTATTTTACGGGATGTTAATAAATGTGGACACACAGGACGTTGTTGGATATATAACAAGACAAAAATGGCTTTCTTATTGGTAGGAATAT
GTTTTCTTTGCAAACTATGCACTATCATCTTCACTACTATTGCATTTTTCATATACAAACGTCGTCTAAATGAGAACACTGACTTCCCAG
ATGTAACTGTGAAGAATCCAAAAGTTAAGAAAAAAGAAGAAACTGACTTGTAACTGGATCATCATTGTGATTGCAGATCATTTGAGGATC
AGAGTGTGAAAACGAGTTTCTCTTTTACAGATTCTCCAAGATTTGTTTCTGTGCCCAACTTTCAGAAGAGGAAAATCACACATTATGTTT

>71770_71770_3_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000389019_length(amino acids)=265AA_BP=36
MRRNRQKLSGGSRWCMHLTSSRCWMCCRSSEALWPSRTGKLGNLTAPCNEKCRCSSSIYSSICGRDDIEYFSPCFAGCTYSKAQNQKKMY
YNCSCIKEGLITADAEGDFIDARPGKCDAKCYKLPLFIAFIFSTLIFSGFSGVPIVLAMTRVVPDKLRSLALGVSYVILRIFGTIPGPSI

--------------------------------------------------------------
>71770_71770_4_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000506729_length(transcript)=1760nt_BP=715nt
CGGTGTGTGTGTTGCGGCAGAAGCCAGCGCGCCTGTGTCCTCTCTAGGAAGGGGTAGGGGAGGGGCGTCTGGAGAGGACCCCCCGCGAAT
GCCCACGTGACGTGCAGTCCCCCTGGGGCTGTTCCGGCCTGCGGGGAACATGGGCGTGCTCAGGGTCGGACTGTGCCCTGGCCTTACCGA
GGAGATGATCCAGCTTCTCAGGAGCCACAGGATCAAGACAGTGGTGGACCTGGTTTCTGCAGACCTGGAAGAGGTAGCTCAGAAATGTGG
CTTGTCTTACAAGGCCCTGGTTGCCCTGAGGCGGGTGCTGCTGGCTCAGTTCTCGGCTTTCCCCGTGAATGGCGCTGATCTCTACGAGGA
ACTGAAGACCTCCACTGCCATCCTGTCCACTGGCATTGGCAGTCTTGATAAACTGCTTGATGCTGGTCTCTATACTGGAGAAGTGACTGA
AATTGTAGGAGGCCCAGGTAGCGGCAAAACTCAGGTATGTCTCTGTATGGCAGCAAATGTGGCCCATGGCCTGCAGCAAAACGTCCTATA
TGTAGATTCCAATGGAGGGCTGACAGCTTCCCGCCTCCTCCAGCTGCTTCAGGCTAAAACCCAGGATGAGGAGGAACAGGCAGAAGCTCT
CCGGAGGATCCAGGTGGTGCATGCATTTGACATCTTCCAGATGCTGGATGTGCTGCAGGAGCTCCGAGGCACTGTGGCCCAGCAGAACAG
GGAAGTTGGGAAACCTCACGGCTCCTTGCAATGAAAAATGTAGATGCTCATCTTCAATTTATTCTTCTATATGTGGAAGAGATGATATTG
AATATTTTTCTCCCTGCTTTGCAGGGTGTACATATTCTAAAGCACAAAACCAAAAAAAGATGTACTACAATTGTTCTTGCATTAAAGAAG
GATTAATAACTGCAGATGCAGAAGGTGATTTTATTGATGCCAGACCCGGGAAATGTGATGCAAAGTGCTATAAGTTACCTTTGTTCATTG
CTTTTATCTTTTCTACACTTATATTTTCTGGTTTTTCTGGTGTACCAATCGTCTTGGCCATGACGCGGGTTGTACCTGACAAACTGCGTT
CTCTGGCCTTGGGTGTAAGCTATGTGATTTTGAGAATATTTGGGACTATTCCTGGACCATCAATCTTTAAAATGTCAGGAGAAACTTCTT
GTATTTTACGGGATGTTAATAAATGTGGACACACAGGACGTTGTTGGATATATAACAAGACAAAAATGGCTTTCTTATTGGTAGGAATAT
GTTTTCTTTGCAAACTATGCACTATCATCTTCACTACTATTGCATTTTTCATATACAAACGTCGTCTAAATGAGAACACTGACTTCCCAG
ATGTAACTGTGAAGAATCCAAAAGTTAAGAAAAAAGAAGAAACTGACTTGTAACTGGATCATCATTGTGATTGCAGATCATTTGAGGATC
AGAGTGTGAAAACGAGTTTCTCTTTTACAGATTCTCCAAGATTTGTTTCTGTGCCCAACTTTCAGAAGAGGAAAATCACACATTATGTTT
ACATAAGTAGCAAAAATATATTTATGGTGATCTGCATTTTCATAATAAAGTGTCCTATTGTGAAACATTTCTGATAATGTTTTTAATGTA
TGTAGAATTTTTAGGATTTACTGGGAGAATTAAAGTTTAATAATTTTAGATTATTTACATTTCTTCTTAATATTCTGCTGTCTAGAAATA

>71770_71770_4_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000506729_length(amino acids)=265AA_BP=36
MRRNRQKLSGGSRWCMHLTSSRCWMCCRSSEALWPSRTGKLGNLTAPCNEKCRCSSSIYSSICGRDDIEYFSPCFAGCTYSKAQNQKKMY
YNCSCIKEGLITADAEGDFIDARPGKCDAKCYKLPLFIAFIFSTLIFSGFSGVPIVLAMTRVVPDKLRSLALGVSYVILRIFGTIPGPSI

--------------------------------------------------------------
>71770_71770_5_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000513675_length(transcript)=1544nt_BP=715nt
CGGTGTGTGTGTTGCGGCAGAAGCCAGCGCGCCTGTGTCCTCTCTAGGAAGGGGTAGGGGAGGGGCGTCTGGAGAGGACCCCCCGCGAAT
GCCCACGTGACGTGCAGTCCCCCTGGGGCTGTTCCGGCCTGCGGGGAACATGGGCGTGCTCAGGGTCGGACTGTGCCCTGGCCTTACCGA
GGAGATGATCCAGCTTCTCAGGAGCCACAGGATCAAGACAGTGGTGGACCTGGTTTCTGCAGACCTGGAAGAGGTAGCTCAGAAATGTGG
CTTGTCTTACAAGGCCCTGGTTGCCCTGAGGCGGGTGCTGCTGGCTCAGTTCTCGGCTTTCCCCGTGAATGGCGCTGATCTCTACGAGGA
ACTGAAGACCTCCACTGCCATCCTGTCCACTGGCATTGGCAGTCTTGATAAACTGCTTGATGCTGGTCTCTATACTGGAGAAGTGACTGA
AATTGTAGGAGGCCCAGGTAGCGGCAAAACTCAGGTATGTCTCTGTATGGCAGCAAATGTGGCCCATGGCCTGCAGCAAAACGTCCTATA
TGTAGATTCCAATGGAGGGCTGACAGCTTCCCGCCTCCTCCAGCTGCTTCAGGCTAAAACCCAGGATGAGGAGGAACAGGCAGAAGCTCT
CCGGAGGATCCAGGTGGTGCATGCATTTGACATCTTCCAGATGCTGGATGTGCTGCAGGAGCTCCGAGGCACTGTGGCCCAGCAGAACAG
GGAAGTTGGGAAACCTCACGGCTCCTTGCAATGAAAAATGTAGATGCTCATCTTCAATTTATTCTTCTATATGTGGAAGAGATGATATTG
AATATTTTTCTCCCTGCTTTGCAGGGTGTACATATTCTAAAGCACAAAACCAAAAAAAGATGTACTACAATTGTTCTTGCATTAAAGAAG
GATTAATAACTGCAGATGCAGAAGGTGATTTTATTGATGCCAGACCCGGGAAATGTGATGCAAAGTGCTATAAGTTACCTTTGTTCATTG
CTTTTATCTTTTCTACACTTATATTTTCTGGTTTTTCTGGTGTACCAATCGTCTTGGCCATGACGCGGGTTGTACCTGACAAACTGCGTT
CTCTGGCCTTGGGTGTAAGCTATGTGATTTTGAGAATATTTGGGACTATTCCTGGACCATCAATCTTTAAAATGTCAGGAGAAACTTCTT
GTATTTTACGGGATGTTAATAAATGTGGACACACAGGACGTTGTTGGATATATAACAAGACAAAAATGGCTTTCTTATTGGTAGGAATAT
GTTTTCTTTGCAAACTATGCACTATCATCTTCACTACTATTGCATTTTTCATATACAAACGTCGTCTAAATGAGAACACTGACTTCCCAG
ATGTAACTGTGAAGAATCCAAAAGTTAAGAAAAAAGAAGAAACTGACTTGTAACTGGATCATCATTGTATTCTCCAAGATTTGTTTCTGT
GCCCAACTTTCAGAAGAGGAAAATCACACATTATGTTTACATAAGTAGCAAAAATATATTTATGGTGATCTGCATTTTCATAATAAAGTG

>71770_71770_5_RAD51D-SLCO6A1_RAD51D_chr17_33433405_ENST00000394589_SLCO6A1_chr5_101748847_ENST00000513675_length(amino acids)=265AA_BP=36
MRRNRQKLSGGSRWCMHLTSSRCWMCCRSSEALWPSRTGKLGNLTAPCNEKCRCSSSIYSSICGRDDIEYFSPCFAGCTYSKAQNQKKMY
YNCSCIKEGLITADAEGDFIDARPGKCDAKCYKLPLFIAFIFSTLIFSGFSGVPIVLAMTRVVPDKLRSLALGVSYVILRIFGTIPGPSI

--------------------------------------------------------------

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Fusion Gene PPI Analysis for RAD51D-SLCO6A1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for RAD51D-SLCO6A1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for RAD51D-SLCO6A1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource