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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:RAI14-LAPTM4A (FusionGDB2 ID:71851)

Fusion Gene Summary for RAI14-LAPTM4A

check button Fusion gene summary
Fusion gene informationFusion gene name: RAI14-LAPTM4A
Fusion gene ID: 71851
HgeneTgene
Gene symbol

RAI14

LAPTM4A

Gene ID

26064

9741

Gene nameretinoic acid induced 14lysosomal protein transmembrane 4 alpha
SynonymsNORPEG|RAI13HUMORF13|LAPTM4|MBNT|Mtrp
Cytomap

5p13.2

2p24.1

Type of geneprotein-codingprotein-coding
Descriptionankycorbinankyrin repeat and coiled-coil structure-containing proteinnovel retinal pigment epithelial cell proteinretinoic acid-induced protein 14lysosomal-associated transmembrane protein 4Agolgi 4-transmembrane-spanning transporter MTPlysosomal-associated protein transmembrane 4 alphamembrane nucleoside transporter
Modification date2020031320200313
UniProtAcc.

Q15012

Ensembl transtripts involved in fusion geneENST00000265109, ENST00000397449, 
ENST00000428746, ENST00000503673, 
ENST00000506376, ENST00000512629, 
ENST00000515799, ENST00000507276, 
ENST00000175091, 
Fusion gene scores* DoF score17 X 11 X 6=11229 X 7 X 5=315
# samples 179
** MAII scorelog2(17/1122*10)=-2.72246602447109
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/315*10)=-1.8073549220576
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: RAI14 [Title/Abstract] AND LAPTM4A [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointRAI14(34823850)-LAPTM4A(20237114), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across RAI14 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across LAPTM4A (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/ABE930969RAI14chr5

34823850

-LAPTM4Achr2

20237114

-


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Fusion Gene ORF analysis for RAI14-LAPTM4A

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000265109ENST00000175091RAI14chr5

34823850

-LAPTM4Achr2

20237114

-
In-frameENST00000397449ENST00000175091RAI14chr5

34823850

-LAPTM4Achr2

20237114

-
In-frameENST00000428746ENST00000175091RAI14chr5

34823850

-LAPTM4Achr2

20237114

-
In-frameENST00000503673ENST00000175091RAI14chr5

34823850

-LAPTM4Achr2

20237114

-
In-frameENST00000506376ENST00000175091RAI14chr5

34823850

-LAPTM4Achr2

20237114

-
In-frameENST00000512629ENST00000175091RAI14chr5

34823850

-LAPTM4Achr2

20237114

-
In-frameENST00000515799ENST00000175091RAI14chr5

34823850

-LAPTM4Achr2

20237114

-
intron-3CDSENST00000507276ENST00000175091RAI14chr5

34823850

-LAPTM4Achr2

20237114

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000265109RAI14chr534823850-ENST00000175091LAPTM4Achr220237114-300921462721408378
ENST00000512629RAI14chr534823850-ENST00000175091LAPTM4Achr220237114-27201857701119349
ENST00000428746RAI14chr534823850-ENST00000175091LAPTM4Achr220237114-299721342601396378
ENST00000503673RAI14chr534823850-ENST00000175091LAPTM4Achr220237114-307822153411477378
ENST00000515799RAI14chr534823850-ENST00000175091LAPTM4Achr220237114-322323604831622379
ENST00000506376RAI14chr534823850-ENST00000175091LAPTM4Achr220237114-285019871521249365
ENST00000397449RAI14chr534823850-ENST00000175091LAPTM4Achr220237114-2701183801100366

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000265109ENST00000175091RAI14chr534823850-LAPTM4Achr220237114-0.0018732060.9981268
ENST00000512629ENST00000175091RAI14chr534823850-LAPTM4Achr220237114-0.0009191210.9990809
ENST00000428746ENST00000175091RAI14chr534823850-LAPTM4Achr220237114-0.0018736270.9981263
ENST00000503673ENST00000175091RAI14chr534823850-LAPTM4Achr220237114-0.0019553460.9980446
ENST00000515799ENST00000175091RAI14chr534823850-LAPTM4Achr220237114-0.0015976830.9984023
ENST00000506376ENST00000175091RAI14chr534823850-LAPTM4Achr220237114-0.0022048480.9977952
ENST00000397449ENST00000175091RAI14chr534823850-LAPTM4Achr220237114-0.0015845280.99841547

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Fusion Genomic Features for RAI14-LAPTM4A


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for RAI14-LAPTM4A


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr5:34823850/chr2:20237114)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.LAPTM4A

Q15012

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: May function in the transport of nucleosides and/or nucleoside derivatives between the cytosol and the lumen of an intracellular membrane-bound compartment. {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneLAPTM4Achr5:34823850chr2:20237114ENST0000017509107226_2290234.0Compositional biasNote=Poly-Pro
TgeneLAPTM4Achr5:34823850chr2:20237114ENST0000017509107108_1280234.0TransmembraneHelical
TgeneLAPTM4Achr5:34823850chr2:20237114ENST0000017509107160_1800234.0TransmembraneHelical
TgeneLAPTM4Achr5:34823850chr2:20237114ENST000001750910729_490234.0TransmembraneHelical
TgeneLAPTM4Achr5:34823850chr2:20237114ENST000001750910782_1020234.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-118349_3740981.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-118425_9470981.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-118349_3740981.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-118425_9470981.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-119349_3740981.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-119425_9470981.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-117349_3740973.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-117425_9470973.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-117349_3740952.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-117425_9470952.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-120349_3740984.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-120425_9470984.0Coiled coilOntology_term=ECO:0000255
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-118270_2760981.0MotifNuclear localization signal
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-118270_2760981.0MotifNuclear localization signal
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-119270_2760981.0MotifNuclear localization signal
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-117270_2760973.0MotifNuclear localization signal
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-117270_2760952.0MotifNuclear localization signal
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-120270_2760984.0MotifNuclear localization signal
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-118118_1470981.0RepeatNote=ANK 4
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-118151_1800981.0RepeatNote=ANK 5
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-118184_2130981.0RepeatNote=ANK 6
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-11818_510981.0RepeatNote=ANK 1
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-118217_2470981.0RepeatNote=ANK 7
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-11852_810981.0RepeatNote=ANK 2
HgeneRAI14chr5:34823850chr2:20237114ENST00000265109-11885_1140981.0RepeatNote=ANK 3
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-118118_1470981.0RepeatNote=ANK 4
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-118151_1800981.0RepeatNote=ANK 5
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-118184_2130981.0RepeatNote=ANK 6
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-11818_510981.0RepeatNote=ANK 1
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-118217_2470981.0RepeatNote=ANK 7
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-11852_810981.0RepeatNote=ANK 2
HgeneRAI14chr5:34823850chr2:20237114ENST00000428746-11885_1140981.0RepeatNote=ANK 3
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-119118_1470981.0RepeatNote=ANK 4
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-119151_1800981.0RepeatNote=ANK 5
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-119184_2130981.0RepeatNote=ANK 6
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-11918_510981.0RepeatNote=ANK 1
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-119217_2470981.0RepeatNote=ANK 7
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-11952_810981.0RepeatNote=ANK 2
HgeneRAI14chr5:34823850chr2:20237114ENST00000503673-11985_1140981.0RepeatNote=ANK 3
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-117118_1470973.0RepeatNote=ANK 4
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-117151_1800973.0RepeatNote=ANK 5
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-117184_2130973.0RepeatNote=ANK 6
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-11718_510973.0RepeatNote=ANK 1
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-117217_2470973.0RepeatNote=ANK 7
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-11752_810973.0RepeatNote=ANK 2
HgeneRAI14chr5:34823850chr2:20237114ENST00000506376-11785_1140973.0RepeatNote=ANK 3
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-117118_1470952.0RepeatNote=ANK 4
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-117151_1800952.0RepeatNote=ANK 5
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-117184_2130952.0RepeatNote=ANK 6
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-11718_510952.0RepeatNote=ANK 1
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-117217_2470952.0RepeatNote=ANK 7
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-11752_810952.0RepeatNote=ANK 2
HgeneRAI14chr5:34823850chr2:20237114ENST00000512629-11785_1140952.0RepeatNote=ANK 3
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-120118_1470984.0RepeatNote=ANK 4
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-120151_1800984.0RepeatNote=ANK 5
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-120184_2130984.0RepeatNote=ANK 6
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-12018_510984.0RepeatNote=ANK 1
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-120217_2470984.0RepeatNote=ANK 7
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-12052_810984.0RepeatNote=ANK 2
HgeneRAI14chr5:34823850chr2:20237114ENST00000515799-12085_1140984.0RepeatNote=ANK 3


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Fusion Gene Sequence for RAI14-LAPTM4A


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>71851_71851_1_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000265109_LAPTM4A_chr2_20237114_ENST00000175091_length(transcript)=3009nt_BP=2146nt
ATCCAGGTCGGCGGGGGCCGGCGCCCGGCGGCCACGTGGTGGTGCTGCCGCTGCCCCCGCCCCGCCGGCCTAGCCCGGGAGCTCGGCGCC
CACTGACCCCCGCAGCGGGGGAGGAGGAGGGACTGCGGCGCAGGAAGCCGAGCAGGAAGCGAGCCCGGCGGCCGCGTTTTCCTGGGGAAG
CGGCGGGCGGGGTGGAGCAGCCAGCTGGGTCCGGGGAGCGCCGCCGCCGCCTCGATGGGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAA
GGCTGAATGCACTAAACATGAAGAGCTTGAAAGCGAAGTTCAGGAAGAGTGACACCAATGAGTGGAACAAGAATGATGACCGGCTACTGC
AGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGA
CCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTA
CCGGACACAGCGCCTTACATCTCGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTG
TCGACAGCTCTGGGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCA
TAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATG
GAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAA
TTAAAAAGGGTGCAGACCTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAA
GCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGACCAAGTCTCTAAAATAAGCTCAG
AAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCACCTCCTATCAGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAA
CTTCGACTCCACTATCGGGAAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACA
GACTAAGTGACAGTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAA
AAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCT
GTCACAGCTGTACAAAGAAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAA
AGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAA
AGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAAC
CACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCT
GGAGAAACAACTCTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAG
TGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGT
CTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCA
AGCTCAGGAAGAACTTGCAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAAC
CTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTA
TACCAGCTTTTTGTTTGTTTATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAA
GCATTTATTTTCAAACACTAAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTT
GAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTT
TCCTTTTTAACTGCACTTTCTTTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCG
GGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATG
ATGGTTGCATGTTTCTAGTTTGTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAA
CTGTGTTTGGAACTGCTATAAATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGA
TTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAA

>71851_71851_1_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000265109_LAPTM4A_chr2_20237114_ENST00000175091_length(amino acids)=378AA_BP=
MNALNMKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTT
GHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHG
ADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSE
RSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAK

--------------------------------------------------------------
>71851_71851_2_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000397449_LAPTM4A_chr2_20237114_ENST00000175091_length(transcript)=2701nt_BP=1838nt
ATGGTGAAGGGGAAGACCAATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCA
CTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAA
TGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCTCGCAGCCAAGAACAGC
CACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAGCTTTACATTATGCAGCG
GCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTT
CTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAACT
GCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAAACCTTGTAGATTCTCTT
GGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTA
AAGACCCCAACAAAACCAAAGCAGCATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCA
CCTCCTATCAGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAAAGGAATCGGTATTTTTT
GCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTACAGGTGCTGATAGCTTATTG
GATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAA
GATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAAGCCCAGGCTGAGCTGGAGG
ATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGT
CCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGG
ATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAA
TAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAAGAGAAAGCTGCTATGACTG
ATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTG
TGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACTC
TCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCAGAAATGAAAAGATACGCTG
AGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCAC
CACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTTTATGTTACAGAATGCTGCA
ATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACTAAGGAGCTTTTTGACATCT
GTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTG
TTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTATATAATCGTTTGCA
TTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTC
ATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGTTTGTATATGTTTCCATCTT
TGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTATAAATACATCAACAACCGAA
ACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCA
GCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGCCTATTTGCCAAGAATCAAAGAATATCTGGATCAACT

>71851_71851_2_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000397449_LAPTM4A_chr2_20237114_ENST00000175091_length(amino acids)=366AA_BP=
MVKGKTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTTGHSALHLAAKNS
HHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHGADVNSRNKSGRT
ALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPP
PPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQ

--------------------------------------------------------------
>71851_71851_3_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000428746_LAPTM4A_chr2_20237114_ENST00000175091_length(transcript)=2997nt_BP=2134nt
GATGGGGTGAGTGCGCGGCACGGAGTTGGGAGGCTCCCGGCGCGGGGTCCCGGGCTCGTGTCCCCGCCTTTGTGTCTGGAGCTCGGGCGC
GGGAGGCGCTGGGGACGGCGCCCGGGCGGAGCGGCTGAGCGGGCTGCAGCCGGGGTCCCGCCACCTCTCCCTGGTCCACCGCCGGCAGCC
CACTGTCTGCGGAGAGCAGATCTGGGGACAAGAGGAAGGAGAGGAAGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAAGGCTGAATGCAC
TAAACATGAAGAGCTTGAAAGCGAAGTTCAGGAAGAGTGACACCAATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGA
ATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATC
TTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCG
CCTTACATCTCGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTG
GGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAG
ATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCA
ATTCCAGGAACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTG
CAGACCTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTAT
CAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAA
CTCCAAAAAAACGCAAAGCTCCACCACCTCCTATCAGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCAC
TATCGGGAAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACA
GTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCC
TTACCTTACACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTA
CAAAGAAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGA
GAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGA
GTTGACCCAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGAC
TGCAGCAAAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACT
CTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGT
GTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAA
AAGAGAAAAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGA
ACTTGCAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGC
CGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTT
GTTTGTTTATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTC
AAACACTAAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTA
GGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACT
GCACTTTCTTTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGT
AGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGT
TTCTAGTTTGTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAA
CTGCTATAAATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAA
AGATGACCTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGCCTATTTGCCA

>71851_71851_3_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000428746_LAPTM4A_chr2_20237114_ENST00000175091_length(amino acids)=378AA_BP=
MNALNMKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTT
GHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHG
ADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSE
RSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAK

--------------------------------------------------------------
>71851_71851_4_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000503673_LAPTM4A_chr2_20237114_ENST00000175091_length(transcript)=3078nt_BP=2215nt
ACTCCCGCTGAGGCTGGGAAGATTGAAAGGGGCCATGGAGAGGCTGCAGTCACAATGAGGCCTCCAGATTCATGTCATCAAAGTGCTTCA
TGATGACTGGATTTTCACACCATTTATCCAAGGGCCCTAGTCAATGGCAGCAGCAAGAATGAAAGTAGACACATTGGAAGCTAGAGAGTC
ACTGGGTGACTTTTGGAGGTAGCAACAAGCTCATGAAGAAGGCATTCAGTGGCTTGCACTCCCCACCCATCCTCTCAACTACATGCGAAG
TTTTCACATCTTGTACATTTCCAAATTTAATGAAAAAGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAAGGCTGAATGCACTAAACATGA
AGAGCTTGAAAGCGAAGTTCAGGAAGAGTGACACCAATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATG
CGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTG
CAAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATC
TCGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAG
CTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATG
GGAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGA
ACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAA
ACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCT
CTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAA
AACGCAAAGCTCCACCACCTCCTATCAGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAA
AGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTACAG
GTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTTAC
ACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAAGC
CCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTGAT
GCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCA
GCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAA
AGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAAGA
GAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATC
GAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAA
GGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCAGA
AATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAAAT
GCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTTTA
TGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACTAA
GGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGCA
AGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCT
TTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGGTA
TAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGTTT
GTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTATAA
ATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGACCT
CCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGCCTATTTGCCAAGAATCAAA

>71851_71851_4_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000503673_LAPTM4A_chr2_20237114_ENST00000175091_length(amino acids)=378AA_BP=
MNALNMKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTT
GHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHG
ADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSE
RSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAK

--------------------------------------------------------------
>71851_71851_5_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000506376_LAPTM4A_chr2_20237114_ENST00000175091_length(transcript)=2850nt_BP=1987nt
GGGAGAAAAACATAGCAGAGGGGTTGTACACGATAATATTTTTTTAAAAGGTCACCCCATAAACCCTTCTATGATCCCAGTCTTGTATTA
GCTGCATTCCAGATACTTTGAGCAGAGTTGTGGAGTGGGAGAAATTAATGGAAGGGAATTAGATGGAAGCCAAGACCAATGAGTGGAACA
AGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCA
AACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGG
ATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCTCGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGT
CTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTC
TCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCT
GTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCT
CTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCT
CAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGACC
AAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCACCTCCTATCAGTCCTACCCAGTTGAGTGATG
TCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTT
CTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATC
TTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACT
CAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGT
CACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGA
AATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCAC
AGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAA
GGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAA
ACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGT
TGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGA
ACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGA
TAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTC
TGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTTTATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAA
AATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACTAAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTC
TTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAA
GAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAG
GAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATT
GTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGTTTGTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAA
ATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTATAAATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTT
TGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTT

>71851_71851_5_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000506376_LAPTM4A_chr2_20237114_ENST00000175091_length(amino acids)=365AA_BP=
MEAKTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTTGHSALHLAAKNSH
HECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHGADVNSRNKSGRTA
LMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPPP
PISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQD

--------------------------------------------------------------
>71851_71851_6_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000512629_LAPTM4A_chr2_20237114_ENST00000175091_length(transcript)=2720nt_BP=1857nt
AGCTGGGTCCGGGGAGCGCCGCCGCCGCCTCGATGGGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAAGGCTGAATGCACTAAACATGAA
GAGCTTGAAAGCGAAGTTCAGGAAGAGTGACACCAATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATGC
GGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGC
AAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCT
CGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAGC
TTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATGG
GAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAA
CAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAAA
CCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCTC
TCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGG
AAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTAC
AGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTT
ACACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAA
GCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTG
ATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACC
CAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCA
AAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAA
GAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCA
TCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAA
AAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCA
GAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAA
ATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTT
TATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACT
AAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAG
CAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTT
CTTTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGG
TATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGT
TTGTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTAT
AAATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGAC
CTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGCCTATTTGCCAAGAATCA

>71851_71851_6_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000512629_LAPTM4A_chr2_20237114_ENST00000175091_length(amino acids)=349AA_BP=
MNALNMKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTT
GHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHG
ADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQLSDVSSPRSI

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>71851_71851_7_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000515799_LAPTM4A_chr2_20237114_ENST00000175091_length(transcript)=3223nt_BP=2360nt
GGAGAGGCTGCAGTCACAATGAGGCCTCCAGATTCATGTCATCAAAGTGCTTCATGATGACTGGATTTTCACACCATTTATCCAAGGGCC
CTAGTCAATGGCAGCAGCAAGAATGAAAGTAGACACATTGGAAGCTAGAGAGTCACTGGGTGACTTTTGGAGGTAGCAACAAGCTCATGA
AGAAGGCATTCAGTGGCTTGCACTCCCCACCCATCCTCTCAACTACATGCGAAGTTTTCACATCTTGTACATTTCCAAATTTAATGAAAA
AGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAAGGCTGAATGCACTAAACATGAAGAGCTTGAAAGCGAAGTTCAGGAAGAGTGACGTAA
ATTAAATAAAACTCATAGAGTGCAAAGAGACTTCGACAAAGACAGAAAACTAGCTGTTGGCCAGAGTGAAAGTCCTGGTCATCCGACTTC
CGAGAAACCTCCTTCAACCTCATCGTCTGCTGGCTGTATGTTATGCAGCCTACATATCTCCCGTGGCTTTCAGCTAAGGAGAAAAAGACC
AATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGG
GCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGGGTCATGATT
ACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCTCGCAGCCAAGAACAGCCACCATGAATGCATCAGG
AAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAA
GCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGT
CACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGT
GAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACAT
TATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCA
AAGCAGCATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCACCTCCTATCAGTCCTACC
CAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAG
GCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCT
GACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAAGATAAATTACAGATAGGA
TGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAAT
CTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAG
ATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACT
CTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAAC
ACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGT
CTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGG
TCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGC
AAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGG
AGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTG
CCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTTTATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAAC
TTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACTAAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTT
TTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGG
GTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTATATAATCGTTTGCATTTTGTTACTTGCTACCC
TGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAA
AATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGTTTGTATATGTTTCCATCTTTGTGATAAGATGATTTAA
TAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTATAAATACATCAACAACCGAAACGTGCCGGAGATTGCTG
TGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTG

>71851_71851_7_RAI14-LAPTM4A_RAI14_chr5_34823850_ENST00000515799_LAPTM4A_chr2_20237114_ENST00000175091_length(amino acids)=379AA_BP=
MYVMQPTYLPWLSAKEKKTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDT
TGHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDH
GADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISS
ERSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQA

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Fusion Gene PPI Analysis for RAI14-LAPTM4A


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for RAI14-LAPTM4A


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for RAI14-LAPTM4A


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource