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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:RANGAP1-CERK (FusionGDB2 ID:72107)

Fusion Gene Summary for RANGAP1-CERK

check button Fusion gene summary
Fusion gene informationFusion gene name: RANGAP1-CERK
Fusion gene ID: 72107
HgeneTgene
Gene symbol

RANGAP1

CERK

Gene ID

5905

64781

Gene nameRan GTPase activating protein 1ceramide kinase
SynonymsFug1|RANGAP|SDLK4|dA59H18.2|dA59H18.3|hCERK
Cytomap

22q13.2

22q13.31

Type of geneprotein-codingprotein-coding
Descriptionran GTPase-activating protein 1segregation distorter homologsegregation distortionceramide kinaseacylsphingosine kinaselipid kinase 4lipid kinase LK4
Modification date2020031320200313
UniProtAcc.

Q49MI3

Ensembl transtripts involved in fusion geneENST00000356244, ENST00000405486, 
ENST00000407260, ENST00000455915, 
ENST00000471929, ENST00000216264, 
ENST00000541677, 
Fusion gene scores* DoF score16 X 14 X 7=156816 X 13 X 6=1248
# samples 1817
** MAII scorelog2(18/1568*10)=-3.12285674778553
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(17/1248*10)=-2.87601128272455
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: RANGAP1 [Title/Abstract] AND CERK [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointRANGAP1(41664101)-CERK(47083103), # samples:2
Anticipated loss of major functional domain due to fusion event.RANGAP1-CERK seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
RANGAP1-CERK seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
RANGAP1-CERK seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
RANGAP1-CERK seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneRANGAP1

GO:0046826

negative regulation of protein export from nucleus

16449645

HgeneRANGAP1

GO:0090630

activation of GTPase activity

16428860

TgeneCERK

GO:0006672

ceramide metabolic process

19501188


check buttonFusion gene breakpoints across RANGAP1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across CERK (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SKCMTCGA-FS-A4F4-06ARANGAP1chr22

41664101

-CERKchr22

47083103

-


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Fusion Gene ORF analysis for RANGAP1-CERK

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000356244ENST00000471929RANGAP1chr22

41664101

-CERKchr22

47083103

-
5CDS-intronENST00000405486ENST00000471929RANGAP1chr22

41664101

-CERKchr22

47083103

-
5CDS-intronENST00000407260ENST00000471929RANGAP1chr22

41664101

-CERKchr22

47083103

-
5CDS-intronENST00000455915ENST00000471929RANGAP1chr22

41664101

-CERKchr22

47083103

-
Frame-shiftENST00000356244ENST00000216264RANGAP1chr22

41664101

-CERKchr22

47083103

-
Frame-shiftENST00000356244ENST00000541677RANGAP1chr22

41664101

-CERKchr22

47083103

-
Frame-shiftENST00000407260ENST00000216264RANGAP1chr22

41664101

-CERKchr22

47083103

-
Frame-shiftENST00000407260ENST00000541677RANGAP1chr22

41664101

-CERKchr22

47083103

-
Frame-shiftENST00000455915ENST00000216264RANGAP1chr22

41664101

-CERKchr22

47083103

-
Frame-shiftENST00000455915ENST00000541677RANGAP1chr22

41664101

-CERKchr22

47083103

-
In-frameENST00000405486ENST00000216264RANGAP1chr22

41664101

-CERKchr22

47083103

-
In-frameENST00000405486ENST00000541677RANGAP1chr22

41664101

-CERKchr22

47083103

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000405486RANGAP1chr2241664101-ENST00000216264CERKchr2247083103-3809101316192224201
ENST00000405486RANGAP1chr2241664101-ENST00000541677CERKchr2247083103-12321013252632126

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000405486ENST00000216264RANGAP1chr2241664101-CERKchr2247083103-0.46822290.53177714
ENST00000405486ENST00000541677RANGAP1chr2241664101-CERKchr2247083103-0.0306016080.96939844

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Fusion Genomic Features for RANGAP1-CERK


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for RANGAP1-CERK


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr22:41664101/chr22:47083103)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.CERK

Q49MI3

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Has no detectable ceramide-kinase activity. Overexpression of CERKL protects cells from apoptosis in oxidative stress conditions. {ECO:0000269|PubMed:15708351, ECO:0000269|PubMed:19158957}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000356244-41648_71100588.0RepeatNote=LRR 1
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000405486-51748_71100588.0RepeatNote=LRR 1
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000455915-31548_71100588.0RepeatNote=LRR 1

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000356244-416359_397100588.0Compositional biasNote=Asp/Glu-rich (highly acidic)
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000356244-416359_399100588.0Compositional biasNote=Asp/Glu-rich (highly acidic)
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000405486-517359_397100588.0Compositional biasNote=Asp/Glu-rich (highly acidic)
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000405486-517359_399100588.0Compositional biasNote=Asp/Glu-rich (highly acidic)
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000455915-315359_397100588.0Compositional biasNote=Asp/Glu-rich (highly acidic)
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000455915-315359_399100588.0Compositional biasNote=Asp/Glu-rich (highly acidic)
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000356244-416523_526100588.0MotifNote=SUMO conjugation
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000405486-517523_526100588.0MotifNote=SUMO conjugation
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000455915-315523_526100588.0MotifNote=SUMO conjugation
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000356244-416111_134100588.0RepeatNote=LRR 2
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000356244-416207_230100588.0RepeatNote=LRR 3
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000356244-416235_258100588.0RepeatNote=LRR 4
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000356244-416292_319100588.0RepeatNote=LRR 5
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000356244-416320_343100588.0RepeatNote=LRR 6
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000405486-517111_134100588.0RepeatNote=LRR 2
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000405486-517207_230100588.0RepeatNote=LRR 3
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000405486-517235_258100588.0RepeatNote=LRR 4
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000405486-517292_319100588.0RepeatNote=LRR 5
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000405486-517320_343100588.0RepeatNote=LRR 6
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000455915-315111_134100588.0RepeatNote=LRR 2
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000455915-315207_230100588.0RepeatNote=LRR 3
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000455915-315235_258100588.0RepeatNote=LRR 4
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000455915-315292_319100588.0RepeatNote=LRR 5
HgeneRANGAP1chr22:41664101chr22:47083103ENST00000455915-315320_343100588.0RepeatNote=LRR 6
TgeneCERKchr22:41664101chr22:47083103ENST000002162641113128_278513538.0DomainDAGKc
TgeneCERKchr22:41664101chr22:47083103ENST000002162641113138_140513538.0Nucleotide bindingATP
TgeneCERKchr22:41664101chr22:47083103ENST000002162641113170_174513538.0Nucleotide bindingATP
TgeneCERKchr22:41664101chr22:47083103ENST000002162641113239_241513538.0Nucleotide bindingATP
TgeneCERKchr22:41664101chr22:47083103ENST000002162641113502_504513538.0Nucleotide bindingATP
TgeneCERKchr22:41664101chr22:47083103ENST000002162641113195_198513538.0RegionSubstrate binding
TgeneCERKchr22:41664101chr22:47083103ENST0000021626411131_115513538.0RegionEssential for enzyme activity
TgeneCERKchr22:41664101chr22:47083103ENST0000021626411131_125513538.0RegionRequired for binding to sulfatide and phosphoinositides


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Fusion Gene Sequence for RANGAP1-CERK


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>72107_72107_1_RANGAP1-CERK_RANGAP1_chr22_41664101_ENST00000405486_CERK_chr22_47083103_ENST00000216264_length(transcript)=3809nt_BP=1013nt
CTTTCCCCGTCACCTGCCTGGAACAGGGGTGCGGGGCGAGGAGGGCGTGGCGCCCGTGTGCGCCTTCTGCCTGCCCCCTCGGCCTTCTTC
ACTTAGCCTTCGACGGCCGAGCGCCCCAGGGGTGGCGGTGGGAGTGGGGTTGTTGAGCGGCGCTGGCTCCTTTCACAAATGGGGAAACTG
AGGCTTAAAGGGCGTCTGACTCGCCAGAGCAGCTCAGCCTGCAGCTGCTAGCAGTGGCGTCTCATATTAGCATTGTTGTCAACCGGAGGC
GGTGCGAGTCCGCCGGGGATTCCAGATGGGGCTCCTGCGCCGCCCGCCTATCATTTGCGGCCTGTATTCGCGCGTCGCTCCCGCAGAGCC
ACCTCCCAGCAGGCCCACGCCCGCGGGGGCCCCGGGCTGGCGCCGCTGTCCCTGGAATCGATAGACGGTCTCCTTCTGTCACCCAGGCTG
GAGTGTAGTGGAACGATCACCGCTGAACTGCAGCGTCGGCTTCCTGGGCTCAAGCGATCCTCCCACCTCAACCTCCCAAGTCATGGGGAC
TACAGATGCCATCACACCTGGCTAATTTTTAAATTTTTCTGTGGAGACAGGGTCTCATTCTGTTGCCCAGGCTTGTCTCGAACCCTGGTC
TAAAGTGATCTTCCCGCCTAGCCTCCCAAAATGTTGGAATTACAGTCTGCAGATCTCCAGGGGAGCCCACCAGCCTAGTCAACATGGCCT
CGGAAGACATTGCCAAGCTGGCAGAGACACTTGCCAAGACTCAGGTGGCCGGGGGACAGCTGAGTTTCAAAGGCAAGAGCCTCAAACTCA
ACACTGCAGAAGATGCTAAAGATGTGATTAAAGAGATTGAAGACTTTGACAGCTTGGAGGCTCTGCGTCTGGAAGGCAACACAGTGGGCG
TGGAAGCAGCCAGGGTCATCGCCAAGGCCTTAGAGAAGAAGTCGGAGTTGAAGCGCTGCCACTGGAGTGACATGTTCACGGGAAGGCTGC
GGACCGAGATCCCACCAGCCCTGAGTCCACTGCCAGCTGGTTCGACTCTTTGCACGAGGAATTGAAGAGAATCCGAAGCCAGACTCACAC
AGCTGAGAAGCCGGCGTCCTGCTCACAAACTGGGAAAGTGTGAAAACTATTTAAGATAATTATTACAGACCAATTATGTTGATATATACA
TTTAAATGTAGAAATTTATTTTTGATAGTTAAATCTTGATTTTAGAAGAAAACCCTTTTGTCAACAATTTTGTGTACATATTTGGCATTT
TCAGTTCTGTACGCATCTGCGGGTTGCAGCCCACGCCGCTTACTCTCAGCGGATGCAGCTGCTCACTTGGGGGCACTGGCCTCTTAGGTT
TTAACGATGTCAACAGTGTAGTTTAGAAAATGGCCCGTTAGTGGCTCTATTGCAATAATGTTAGGGACATTATATGATTTCCACGCAGGT
CACACCATCTGGGCCTGAGGTAGCAGTGGGTCACTTTGATCCACTTTGCAGGACTTATTCTGTAACGGTTTGTGGCCAAGTTTTGGGAAG
TGGTTGATTCTCTTTGCCTTCATTTCACCTTCCTCTTCGTTTACGGTTAGGACATCGCTGCTTGATCCTTACAATACTGTGCAACTGCAA
TGCAACGTGGCCCTGCTTCAGGTGATCCGCGGGAGGGGCCTCCACGCCAGCGCCGGGAAGGCTGCTGGGGCCTCCACACCTGCCTCATCA
CGGCGGCGAGGCTACGACAATCCGGCTGGGAGCATGACCTTGGCGTCTGTTCTGGGAGCACGGATGATAAGCTCTGGAAGCTGGCAGTGT
GTAAAGCACTGGCAAGTTTGTTACTGTTAAAATGTCAAATACCAATGCTTTATATCGACGCGAAGTGCTTAACACAGCCGGGCTTGGGGG
CAGTCAGGAGGAAGCTGGCCATCCGTGGAGGAGGGGCCGGTCCTGGACTCCCGCAGGACTCCTCTGAGGCAGGGCCTGAAGTCTGTACAC
GTGGTCCAGATTTGTCCTTGTCTTTTCTTCACACTGAGTTCTCTATATTTATTGAACATCTTGTCCTTTTAAGCCAGAGTAGTGTAAACT
GCGTCTCGGATGTCTGTCTTTTGCCTCGAAGCCACGATGGATCGCTGGTTTCCTCTGCAGCGCGAGGGCTCCGGCGACCAGAGGATTCTT
CCCGGAAGGCATTCCTGCCGCGCTCCCCGGGGCACCCCTCAATTGTGTACTACGTCCTTGTTTAGTGTGTATCCGTGCCCACGTAGATGA
TGTCTGTAACGTAGTTTTGTTTGAAATATGAGAATATGCGGCTTAAACTTTGATCTGTAAGGAGCGGGGCCGTGGCCGTTTGGAGCACGC
TGTAGACACCGTTCCTCATGCTGCCGGGTGGGTTTTGCAGAAGCTCCCTTAGTGATTTCATGTTTAACAGGCAGCATCCATTTTCAGAAT
TTCCTGGCATTGATTTATATTTTGAAGCATACAGGAAACTTCTCGTTTCCTCGTTTAGCCCCACCCAGATCAGGTGAAAGGGCAGCTTTA
ATGGTGGTTTTTATGGACCACATTATCAGAGAGCACTGTGCAAGCCAAATGGTTCAATAATGAATGAAAATTCTGGGTGTAAAGAGTAAA
TATGCCCTGGCTCTTTCTACCAATGTTTGCTCCTGGTTGGAAAGAAACCAAAGATTTAAGACGGGCTGCTCTTCCAGACTGGCTGTGCCT
GCCTGTGCCCAGCAACCTGTGCAGCCGGCAGTGTGCCTGGTGTCACGCCAGGAGGCTGTGGCTGCTGTGGGCCCTCTGGAATTGTGCTCC
TCACAAAGTTTCCCCAAAAGGTTCTTCTAAGCCTTTATTGTCCCTGGTAAATGTTTCCCGGCTGGGCGCGGTGGCTCACGCCTGTAATCC
CAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTAAGGTCAGGAGTTTGAGATCAGCCTGCCCAACATGGTGAAACCTCGTCTCTACTA
AAAATACACAACTTAGCCAGTCTTGTTGGCGCACGCCTGTAATCTCAGCTACTAGGGATGCTGAGGCAGGAGAATCGCTTGAACCCAAGA
AAGAGGTGGAGGTTGCGGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCAAACAGAGGGAGACTCCATCGCCCCCCCCAACAAAA
AAAAAAGTTTCCCATACACTGGCCTGCCCCAAAACCCACTAACAATTTTAGCAAAACAGTCCAGGCCAAAGAGGAAGCATTTCATGTTCA
ATAAGAAACCCAGCCATTCCGCATGGCTGGTTCCTGAGTGGCTCTGGTGATACTCTCCAGCCACCTGCTGACATTCAGAATCTCAGACCT
CGGGACTGCTGTTGCGGTACCGTGTGTCTGACACCTGCCAGCAGCCCTTTGCTATCTGCGCGCAGGATGGGGGTGACTGCCCAGACATTC
CCGCTAGATAGGCTCTGATTTCCGGGGCAGCCTTTCAGATGCGGCAGACATACAACACCTGTACTTTAGAGTTTTAAGGGAAAAAAAATC
AGAAGTGCTGGTTAGATAGTAAAAACTTAGGATAACTTAGAAAGGCTAGTTTTAGCTTCCTTTGTGGCTCCCTGGTGCAAAACAATTAGC
AGTTATGCAATGGACCTGATTCTAGTTTATTCTAATTAAGAAGTGAGGCCGAGTTTGACTTCGTTCCTGAATACAATCTTGAGTAACTGG
GAAAGTCTGAGTGAAAGGATGGCCTCATTCTCTTTCTAATCTTGCTGGTTTCAAGATTAGAAAATGGCATTATTTGATCTGAAATGTTTG

>72107_72107_1_RANGAP1-CERK_RANGAP1_chr22_41664101_ENST00000405486_CERK_chr22_47083103_ENST00000216264_length(amino acids)=201AA_BP=
MQRGPASGDPREGPPRQRREGCWGLHTCLITAARLRQSGWEHDLGVCSGSTDDKLWKLAVCKALASLLLLKCQIPMLYIDAKCLTQPGLG
AVRRKLAIRGGGAGPGLPQDSSEAGPEVCTRGPDLSLSFLHTEFSIFIEHLVLLSQSSVNCVSDVCLLPRSHDGSLVSSAARGLRRPEDS

--------------------------------------------------------------
>72107_72107_2_RANGAP1-CERK_RANGAP1_chr22_41664101_ENST00000405486_CERK_chr22_47083103_ENST00000541677_length(transcript)=1232nt_BP=1013nt
CTTTCCCCGTCACCTGCCTGGAACAGGGGTGCGGGGCGAGGAGGGCGTGGCGCCCGTGTGCGCCTTCTGCCTGCCCCCTCGGCCTTCTTC
ACTTAGCCTTCGACGGCCGAGCGCCCCAGGGGTGGCGGTGGGAGTGGGGTTGTTGAGCGGCGCTGGCTCCTTTCACAAATGGGGAAACTG
AGGCTTAAAGGGCGTCTGACTCGCCAGAGCAGCTCAGCCTGCAGCTGCTAGCAGTGGCGTCTCATATTAGCATTGTTGTCAACCGGAGGC
GGTGCGAGTCCGCCGGGGATTCCAGATGGGGCTCCTGCGCCGCCCGCCTATCATTTGCGGCCTGTATTCGCGCGTCGCTCCCGCAGAGCC
ACCTCCCAGCAGGCCCACGCCCGCGGGGGCCCCGGGCTGGCGCCGCTGTCCCTGGAATCGATAGACGGTCTCCTTCTGTCACCCAGGCTG
GAGTGTAGTGGAACGATCACCGCTGAACTGCAGCGTCGGCTTCCTGGGCTCAAGCGATCCTCCCACCTCAACCTCCCAAGTCATGGGGAC
TACAGATGCCATCACACCTGGCTAATTTTTAAATTTTTCTGTGGAGACAGGGTCTCATTCTGTTGCCCAGGCTTGTCTCGAACCCTGGTC
TAAAGTGATCTTCCCGCCTAGCCTCCCAAAATGTTGGAATTACAGTCTGCAGATCTCCAGGGGAGCCCACCAGCCTAGTCAACATGGCCT
CGGAAGACATTGCCAAGCTGGCAGAGACACTTGCCAAGACTCAGGTGGCCGGGGGACAGCTGAGTTTCAAAGGCAAGAGCCTCAAACTCA
ACACTGCAGAAGATGCTAAAGATGTGATTAAAGAGATTGAAGACTTTGACAGCTTGGAGGCTCTGCGTCTGGAAGGCAACACAGTGGGCG
TGGAAGCAGCCAGGGTCATCGCCAAGGCCTTAGAGAAGAAGTCGGAGTTGAAGCGCTGCCACTGGAGTGACATGTTCACGGGAAGGCTGC
GGACCGAGATCCCACCAGCCCTGAGTCCACTGCCAGCTGGTTCGACTCTTTGCACGAGGAATTGAAGAGAATCCGAAGCCAGACTCACAC
AGCTGAGAAGCCGGCGTCCTGCTCACAAACTGGGAAAGTGTGAAAACTATTTAAGATAATTATTACAGACCAATTATGTTGATATATACA

>72107_72107_2_RANGAP1-CERK_RANGAP1_chr22_41664101_ENST00000405486_CERK_chr22_47083103_ENST00000541677_length(amino acids)=126AA_BP=
MLSTGGGASPPGIPDGAPAPPAYHLRPVFARRSRRATSQQAHARGGPGLAPLSLESIDGLLLSPRLECSGTITAELQRRLPGLKRSSHLN

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Fusion Gene PPI Analysis for RANGAP1-CERK


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for RANGAP1-CERK


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for RANGAP1-CERK


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource