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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:RNF10-CCDC60 (FusionGDB2 ID:74675) |
Fusion Gene Summary for RNF10-CCDC60 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RNF10-CCDC60 | Fusion gene ID: 74675 | Hgene | Tgene | Gene symbol | RNF10 | CCDC60 | Gene ID | 9921 | 160777 |
| Gene name | ring finger protein 10 | coiled-coil domain containing 60 | |
| Synonyms | RIE2 | - | |
| Cytomap | 12q24.31 | 12q24.23 | |
| Type of gene | protein-coding | protein-coding | |
| Description | RING finger protein 10epididymis secretory sperm binding protein | coiled-coil domain-containing protein 60 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | Q8IWA6 | |
| Ensembl transtripts involved in fusion gene | ENST00000325954, ENST00000413266, ENST00000542701, | ENST00000546345, ENST00000327554, ENST00000536742, ENST00000539847, | |
| Fusion gene scores | * DoF score | 14 X 13 X 9=1638 | 7 X 5 X 5=175 |
| # samples | 16 | 6 | |
| ** MAII score | log2(16/1638*10)=-3.35579154675365 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/175*10)=-1.54432051622381 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: RNF10 [Title/Abstract] AND CCDC60 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | RNF10(120984404)-CCDC60(119866488), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | RNF10 | GO:0045893 | positive regulation of transcription, DNA-templated | 16335786 |
| Hgene | RNF10 | GO:0051865 | protein autoubiquitination | 24105792 |
| Fusion gene breakpoints across RNF10 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across CCDC60 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | LGG | TCGA-S9-A6WL-01A | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
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Fusion Gene ORF analysis for RNF10-CCDC60 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-3UTR | ENST00000325954 | ENST00000546345 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| 5CDS-3UTR | ENST00000413266 | ENST00000546345 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| In-frame | ENST00000325954 | ENST00000327554 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| In-frame | ENST00000325954 | ENST00000536742 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| In-frame | ENST00000325954 | ENST00000539847 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| In-frame | ENST00000413266 | ENST00000327554 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| In-frame | ENST00000413266 | ENST00000536742 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| In-frame | ENST00000413266 | ENST00000539847 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| intron-3CDS | ENST00000542701 | ENST00000327554 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| intron-3CDS | ENST00000542701 | ENST00000536742 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| intron-3CDS | ENST00000542701 | ENST00000539847 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| intron-3UTR | ENST00000542701 | ENST00000546345 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000325954 | RNF10 | chr12 | 120984404 | - | ENST00000536742 | CCDC60 | chr12 | 119866488 | + | 1146 | 815 | 434 | 1126 | 230 |
| ENST00000325954 | RNF10 | chr12 | 120984404 | - | ENST00000327554 | CCDC60 | chr12 | 119866488 | + | 2710 | 815 | 434 | 2377 | 647 |
| ENST00000325954 | RNF10 | chr12 | 120984404 | - | ENST00000539847 | CCDC60 | chr12 | 119866488 | + | 1058 | 815 | 642 | 85 | 185 |
| ENST00000413266 | RNF10 | chr12 | 120984404 | - | ENST00000536742 | CCDC60 | chr12 | 119866488 | + | 685 | 354 | 0 | 665 | 221 |
| ENST00000413266 | RNF10 | chr12 | 120984404 | - | ENST00000327554 | CCDC60 | chr12 | 119866488 | + | 2249 | 354 | 0 | 1916 | 638 |
| ENST00000413266 | RNF10 | chr12 | 120984404 | - | ENST00000539847 | CCDC60 | chr12 | 119866488 | + | 597 | 354 | 0 | 437 | 145 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000325954 | ENST00000536742 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + | 0.006215582 | 0.9937844 |
| ENST00000325954 | ENST00000327554 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + | 0.007428886 | 0.9925712 |
| ENST00000325954 | ENST00000539847 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + | 0.008071629 | 0.99192834 |
| ENST00000413266 | ENST00000536742 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + | 0.012713033 | 0.9872869 |
| ENST00000413266 | ENST00000327554 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + | 0.00560271 | 0.9943973 |
| ENST00000413266 | ENST00000539847 | RNF10 | chr12 | 120984404 | - | CCDC60 | chr12 | 119866488 | + | 0.012521138 | 0.98747885 |
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Fusion Genomic Features for RNF10-CCDC60 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for RNF10-CCDC60 |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:120984404/chr12:119866488) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | CCDC60 |
| FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | RNF10 | chr12:120984404 | chr12:119866488 | ENST00000325954 | - | 2 | 17 | 19_110 | 118 | 812.0 | Compositional bias | Note=Ser-rich |
| Hgene | RNF10 | chr12:120984404 | chr12:119866488 | ENST00000413266 | - | 2 | 17 | 19_110 | 118 | 817.0 | Compositional bias | Note=Ser-rich |
| Tgene | CCDC60 | chr12:120984404 | chr12:119866488 | ENST00000327554 | 0 | 14 | 71_98 | 30 | 551.0 | Coiled coil | Ontology_term=ECO:0000255 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | RNF10 | chr12:120984404 | chr12:119866488 | ENST00000325954 | - | 2 | 17 | 225_267 | 118 | 812.0 | Zinc finger | RING-type |
| Hgene | RNF10 | chr12:120984404 | chr12:119866488 | ENST00000413266 | - | 2 | 17 | 225_267 | 118 | 817.0 | Zinc finger | RING-type |
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Fusion Gene Sequence for RNF10-CCDC60 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >74675_74675_1_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000325954_CCDC60_chr12_119866488_ENST00000327554_length(transcript)=2710nt_BP=815nt GAGATGCTGTTTGGCGACTCGTCGCCATTCCCGGAGCAGGTCGGCCTCGGCCCAGGGGCGAGTATCCGTTGCTGTGTCGGAGACACTAGT CCCCGACACCGAGACAGCCAGCCCTCTCCCCTGCCTCGCGGCGGGAGAGCGTGTCCGGCCGGCCGGCCGGCGGGGCTCGCGCAACCTCCC TCGCCTCCCCTTCCCCCGCAGCCTCCGCCCCGCCAGGCCCGGCCCGGACTCCCGAGCCCCGGCCTCCTCGTCCTCGGTCGCCGCTGCCGC CGGGCTTAACAGCCCCGTCCGCCGCTTCTCTTCCTAGTTTGAGAAGCCAAGGAAGGAAACAGGGAAAAATGTCGCCATGAAGGCCGAGAA CCGCTGCCGCCGCCGACCCCCGCCGGCCCTGAACGCCATGAGCCTGGGTCCCCGCCGCGCCCGCTCCGCTCCGACTGCCGTCGCCGCCGA GGCCCCCGTTGATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGGCTCCAACAGCTCCTCCGCCT CTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAGCCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACT CCAGTGGATCCAAGCGTTATAATCGCAAACGTGAACTTTCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCAC AGAAAAGCAAGACTTTTAACAAGATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAG ATGAGGTCCCAGACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCGCTTTT TGATCCAGTCTGTGAAGATAGGCCGTGGATATTTTGCTATTCTGAGGGAAGAGACTGCAAAGAAAAAGAAGCAACAACAACTTCAGAAAC TGAAAGAGGAGGAAAGAAATAAATTCCAGCCAGCCGAAAAGATCTCAGAAATCCACTATGGGGACACCTTATTGAGCACATATGATGATG AGAAGTTGAAGACACTGGGAGCTAGAGTCACACGTCGCCCATTCACTCCCATCCACAGCTGCATCATTTCTCCCTCGCTAACCGAGGCTC ACGTCGAGCCCCTCTTCCGCCAGCTCTGTGCTCTCCACTGGCTTCTGGAGGCCCTGACTATTGACCACACCCACCACACCATGAAGCCTG TGATCACCTGCTGGAACCCAAAGGACCCGGGTGGAAGCAAGAGCACCATTAAAAAAATCAATAAGGACAAGTCCATGGGACAGAAATGGG AGCATTTCATCACAGCGCCAAAGACCAAGAAATTCAAAATTCCCACAATGCGAGTCACCAACCGCAAACCAAGCCGGCGAGGCTCCACAC TCAGTCTGAGTCGGGCCAGTGGGGGGTCCTCTCCCCAGAGCAGCATGATCTCTGTGAACCCTGGCTCGGATGAGCCCCCAAGTGTGAACA CCCAGGTGACCAGCAGCAAGGACATTGAGGACAATGAGTCATCTTCAACCAAGCCAGATGAAGAACCTCTGTATATGAATCTGCAGAAGC TCCTGGAGATGGTTCGGGAAGATGCCCGGAGGACAGTCACAATAGAAAATGGGATGCAAAGAAAAGCACCCAGCATCTTGTCAGTGCTGA AACAAAACAAGAGTAATTCTGCTTATAAGGAAATGCAGACCACTCTCAAATCAAGTGAGAGATCCAGCAGTACAAGTGCAGAAAGCCACA TCCAACCAGTCCAGAAGAAGTCTAAAAACCGCACTAATTGTGACATCAACATCCACTACAAGAGTGGGGTGTGTAACACCATGAGGGCCA AGTTTTACAGCGTAGCCCAGGAGGCTGGCTTCTGCCTGCAGGACAAGATGGAAATCCTCATGAAGCGCCAAGAAGAGAGAGGTATCCAGA AGTTCCGTGCTTTTGTCCTTGTCTCAAATTTTCAAAAGGACATAGCAAAAATGAGACATCACATATCTGTAGTAAAAGGAGATGCAGAAG AAATTGCAGACCACTGGTACTTTGATCTGTTGTCCAAACTGCCAGAGGATCTAAAGAACTTCCGCCCCGCCAAAAAGATCCTGGTGAAAC TGCAGAAGTTTGGAGAAAACCTGGACTTGCGGATTCGACCCCATGTCCTCCTGAAGGTGCTGCAGGATCTGAGGATTTGGGAACTGTGCT CCCCTGACATCGCTGTGGCTATTGAGTTTGTGCGAGAACACATCATCCATATGCCTCAAGAGGATTACATCAGCTGGCTGCAGAGCCGGA TCAACATACCCATTGGGCCCTACAGCGCCCTGAGGTAGGCTGGGCCTGGGTTGACCAGCTGTCTCAGTGGAGGAGTGTTTGCCTATATCA TGTTCCTGTATCCTGCCTGTGTTCCTGCCTCCTGACTACCCTCATGGATGCTCTTTATGGATGACCCTTTACAGTAGGGTCATCTGGAGA CTGACTTCCAGCAACATTTTTAGAGGGGGATGGCCCCGGTGGCCCTCCCCTCAATTCCACACCCCAGACCCAACCTACCAGTCTCTGTTC TTCAATGATCCAGCCTGACTCTACCTACTTCCTCTTCAGATTCCTTCACCCTATTTACCTTCCTCAAGTACTGGAGAATAAAATTGAACT >74675_74675_1_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000325954_CCDC60_chr12_119866488_ENST00000327554_length(amino acids)=647AA_BP=127 MPSPPRPPLMPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYPKNESFNNQS RRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVPDKPMKSIKYMDKEIINLKKDLIRSRFLIQSVKIGRGYFAILREETAKKKKQ QQLQKLKEEERNKFQPAEKISEIHYGDTLLSTYDDEKLKTLGARVTRRPFTPIHSCIISPSLTEAHVEPLFRQLCALHWLLEALTIDHTH HTMKPVITCWNPKDPGGSKSTIKKINKDKSMGQKWEHFITAPKTKKFKIPTMRVTNRKPSRRGSTLSLSRASGGSSPQSSMISVNPGSDE PPSVNTQVTSSKDIEDNESSSTKPDEEPLYMNLQKLLEMVREDARRTVTIENGMQRKAPSILSVLKQNKSNSAYKEMQTTLKSSERSSST SAESHIQPVQKKSKNRTNCDINIHYKSGVCNTMRAKFYSVAQEAGFCLQDKMEILMKRQEERGIQKFRAFVLVSNFQKDIAKMRHHISVV KGDAEEIADHWYFDLLSKLPEDLKNFRPAKKILVKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIAVAIEFVREHIIHMPQEDYIS -------------------------------------------------------------- >74675_74675_2_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000325954_CCDC60_chr12_119866488_ENST00000536742_length(transcript)=1146nt_BP=815nt GAGATGCTGTTTGGCGACTCGTCGCCATTCCCGGAGCAGGTCGGCCTCGGCCCAGGGGCGAGTATCCGTTGCTGTGTCGGAGACACTAGT CCCCGACACCGAGACAGCCAGCCCTCTCCCCTGCCTCGCGGCGGGAGAGCGTGTCCGGCCGGCCGGCCGGCGGGGCTCGCGCAACCTCCC TCGCCTCCCCTTCCCCCGCAGCCTCCGCCCCGCCAGGCCCGGCCCGGACTCCCGAGCCCCGGCCTCCTCGTCCTCGGTCGCCGCTGCCGC CGGGCTTAACAGCCCCGTCCGCCGCTTCTCTTCCTAGTTTGAGAAGCCAAGGAAGGAAACAGGGAAAAATGTCGCCATGAAGGCCGAGAA CCGCTGCCGCCGCCGACCCCCGCCGGCCCTGAACGCCATGAGCCTGGGTCCCCGCCGCGCCCGCTCCGCTCCGACTGCCGTCGCCGCCGA GGCCCCCGTTGATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGGCTCCAACAGCTCCTCCGCCT CTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAGCCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACT CCAGTGGATCCAAGCGTTATAATCGCAAACGTGAACTTTCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCAC AGAAAAGCAAGACTTTTAACAAGATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAG ATGAGGTCCCAGACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCGCCTCT CCCACTGCCGGACACAAAGGAGAATGGGGAAAAGGCCAAACAGAGAAGCCACAAGCAAGCAAGAAAGAAACGACAATGAGATGTTCCATC TGGCCACACTTCTGGATCCCACCAACATTAAGGAAGGAATCAGGATTCCCCTTCAGAAGGAAACACCATGTTTTCCAAGGGAAGTCATCT >74675_74675_2_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000325954_CCDC60_chr12_119866488_ENST00000536742_length(amino acids)=230AA_BP=127 MPSPPRPPLMPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYPKNESFNNQS RRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVPDKPMKSIKYMDKEIINLKKDLIRSRLSHCRTQRRMGKRPNREATSKQERND -------------------------------------------------------------- >74675_74675_3_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000325954_CCDC60_chr12_119866488_ENST00000539847_length(transcript)=1058nt_BP=815nt GAGATGCTGTTTGGCGACTCGTCGCCATTCCCGGAGCAGGTCGGCCTCGGCCCAGGGGCGAGTATCCGTTGCTGTGTCGGAGACACTAGT CCCCGACACCGAGACAGCCAGCCCTCTCCCCTGCCTCGCGGCGGGAGAGCGTGTCCGGCCGGCCGGCCGGCGGGGCTCGCGCAACCTCCC TCGCCTCCCCTTCCCCCGCAGCCTCCGCCCCGCCAGGCCCGGCCCGGACTCCCGAGCCCCGGCCTCCTCGTCCTCGGTCGCCGCTGCCGC CGGGCTTAACAGCCCCGTCCGCCGCTTCTCTTCCTAGTTTGAGAAGCCAAGGAAGGAAACAGGGAAAAATGTCGCCATGAAGGCCGAGAA CCGCTGCCGCCGCCGACCCCCGCCGGCCCTGAACGCCATGAGCCTGGGTCCCCGCCGCGCCCGCTCCGCTCCGACTGCCGTCGCCGCCGA GGCCCCCGTTGATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGGCTCCAACAGCTCCTCCGCCT CTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAGCCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACT CCAGTGGATCCAAGCGTTATAATCGCAAACGTGAACTTTCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCAC AGAAAAGCAAGACTTTTAACAAGATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAG ATGAGGTCCCAGACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCGGTGAG TGAGCCCAGCAGGGAATGATCCATAGACAACCCAACAGGCATGAGCAGGCTATGGGGTGTTGCCTACAAGTCCTTGCCCAGTCCCAGCAT >74675_74675_3_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000325954_CCDC60_chr12_119866488_ENST00000539847_length(amino acids)=185AA_BP= MDPLEFFPSLLGLDSPAGPAEAERGGCCPLLLPEEAEELLEPLFLSMSEAVAAALGELSGINGGLGGDGSRSGAGAAGTQAHGVQGRRGS AAAAVLGLHGDIFPCFLPWLLKLGREAADGAVKPGGSGDRGRGGRGSGVRAGPGGAEAAGEGEAREVARAPPAGRPDTLSRREAGERAGC -------------------------------------------------------------- >74675_74675_4_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000413266_CCDC60_chr12_119866488_ENST00000327554_length(transcript)=2249nt_BP=354nt ATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGGCTCCAACAGCTCCTCCGCCTCTTCGGGCAGC AGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAGCCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACTCCAGTGGATCC AAGCGTTATAATCGCAAACGTGAACTTTCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAG ACTTTTAACAAGATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAGATGAGGTCCCA GACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCGCTTTTTGATCCAGTCT GTGAAGATAGGCCGTGGATATTTTGCTATTCTGAGGGAAGAGACTGCAAAGAAAAAGAAGCAACAACAACTTCAGAAACTGAAAGAGGAG GAAAGAAATAAATTCCAGCCAGCCGAAAAGATCTCAGAAATCCACTATGGGGACACCTTATTGAGCACATATGATGATGAGAAGTTGAAG ACACTGGGAGCTAGAGTCACACGTCGCCCATTCACTCCCATCCACAGCTGCATCATTTCTCCCTCGCTAACCGAGGCTCACGTCGAGCCC CTCTTCCGCCAGCTCTGTGCTCTCCACTGGCTTCTGGAGGCCCTGACTATTGACCACACCCACCACACCATGAAGCCTGTGATCACCTGC TGGAACCCAAAGGACCCGGGTGGAAGCAAGAGCACCATTAAAAAAATCAATAAGGACAAGTCCATGGGACAGAAATGGGAGCATTTCATC ACAGCGCCAAAGACCAAGAAATTCAAAATTCCCACAATGCGAGTCACCAACCGCAAACCAAGCCGGCGAGGCTCCACACTCAGTCTGAGT CGGGCCAGTGGGGGGTCCTCTCCCCAGAGCAGCATGATCTCTGTGAACCCTGGCTCGGATGAGCCCCCAAGTGTGAACACCCAGGTGACC AGCAGCAAGGACATTGAGGACAATGAGTCATCTTCAACCAAGCCAGATGAAGAACCTCTGTATATGAATCTGCAGAAGCTCCTGGAGATG GTTCGGGAAGATGCCCGGAGGACAGTCACAATAGAAAATGGGATGCAAAGAAAAGCACCCAGCATCTTGTCAGTGCTGAAACAAAACAAG AGTAATTCTGCTTATAAGGAAATGCAGACCACTCTCAAATCAAGTGAGAGATCCAGCAGTACAAGTGCAGAAAGCCACATCCAACCAGTC CAGAAGAAGTCTAAAAACCGCACTAATTGTGACATCAACATCCACTACAAGAGTGGGGTGTGTAACACCATGAGGGCCAAGTTTTACAGC GTAGCCCAGGAGGCTGGCTTCTGCCTGCAGGACAAGATGGAAATCCTCATGAAGCGCCAAGAAGAGAGAGGTATCCAGAAGTTCCGTGCT TTTGTCCTTGTCTCAAATTTTCAAAAGGACATAGCAAAAATGAGACATCACATATCTGTAGTAAAAGGAGATGCAGAAGAAATTGCAGAC CACTGGTACTTTGATCTGTTGTCCAAACTGCCAGAGGATCTAAAGAACTTCCGCCCCGCCAAAAAGATCCTGGTGAAACTGCAGAAGTTT GGAGAAAACCTGGACTTGCGGATTCGACCCCATGTCCTCCTGAAGGTGCTGCAGGATCTGAGGATTTGGGAACTGTGCTCCCCTGACATC GCTGTGGCTATTGAGTTTGTGCGAGAACACATCATCCATATGCCTCAAGAGGATTACATCAGCTGGCTGCAGAGCCGGATCAACATACCC ATTGGGCCCTACAGCGCCCTGAGGTAGGCTGGGCCTGGGTTGACCAGCTGTCTCAGTGGAGGAGTGTTTGCCTATATCATGTTCCTGTAT CCTGCCTGTGTTCCTGCCTCCTGACTACCCTCATGGATGCTCTTTATGGATGACCCTTTACAGTAGGGTCATCTGGAGACTGACTTCCAG CAACATTTTTAGAGGGGGATGGCCCCGGTGGCCCTCCCCTCAATTCCACACCCCAGACCCAACCTACCAGTCTCTGTTCTTCAATGATCC >74675_74675_4_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000413266_CCDC60_chr12_119866488_ENST00000327554_length(amino acids)=638AA_BP=118 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYPKNESFNNQSRRSSSQKSK TFNKMPPQRGGGSSKLFSSSFNGGRRDEVPDKPMKSIKYMDKEIINLKKDLIRSRFLIQSVKIGRGYFAILREETAKKKKQQQLQKLKEE ERNKFQPAEKISEIHYGDTLLSTYDDEKLKTLGARVTRRPFTPIHSCIISPSLTEAHVEPLFRQLCALHWLLEALTIDHTHHTMKPVITC WNPKDPGGSKSTIKKINKDKSMGQKWEHFITAPKTKKFKIPTMRVTNRKPSRRGSTLSLSRASGGSSPQSSMISVNPGSDEPPSVNTQVT SSKDIEDNESSSTKPDEEPLYMNLQKLLEMVREDARRTVTIENGMQRKAPSILSVLKQNKSNSAYKEMQTTLKSSERSSSTSAESHIQPV QKKSKNRTNCDINIHYKSGVCNTMRAKFYSVAQEAGFCLQDKMEILMKRQEERGIQKFRAFVLVSNFQKDIAKMRHHISVVKGDAEEIAD HWYFDLLSKLPEDLKNFRPAKKILVKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIAVAIEFVREHIIHMPQEDYISWLQSRINIP -------------------------------------------------------------- >74675_74675_5_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000413266_CCDC60_chr12_119866488_ENST00000536742_length(transcript)=685nt_BP=354nt ATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGGCTCCAACAGCTCCTCCGCCTCTTCGGGCAGC AGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAGCCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACTCCAGTGGATCC AAGCGTTATAATCGCAAACGTGAACTTTCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAG ACTTTTAACAAGATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAGATGAGGTCCCA GACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCGCCTCTCCCACTGCCGG ACACAAAGGAGAATGGGGAAAAGGCCAAACAGAGAAGCCACAAGCAAGCAAGAAAGAAACGACAATGAGATGTTCCATCTGGCCACACTT CTGGATCCCACCAACATTAAGGAAGGAATCAGGATTCCCCTTCAGAAGGAAACACCATGTTTTCCAAGGGAAGTCATCTCTCCAAGTGGC >74675_74675_5_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000413266_CCDC60_chr12_119866488_ENST00000536742_length(amino acids)=221AA_BP=118 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYPKNESFNNQSRRSSSQKSK TFNKMPPQRGGGSSKLFSSSFNGGRRDEVPDKPMKSIKYMDKEIINLKKDLIRSRLSHCRTQRRMGKRPNREATSKQERNDNEMFHLATL -------------------------------------------------------------- >74675_74675_6_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000413266_CCDC60_chr12_119866488_ENST00000539847_length(transcript)=597nt_BP=354nt ATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGGCTCCAACAGCTCCTCCGCCTCTTCGGGCAGC AGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAGCCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACTCCAGTGGATCC AAGCGTTATAATCGCAAACGTGAACTTTCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAG ACTTTTAACAAGATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAGATGAGGTCCCA GACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCGGTGAGTGAGCCCAGCA GGGAATGATCCATAGACAACCCAACAGGCATGAGCAGGCTATGGGGTGTTGCCTACAAGTCCTTGCCCAGTCCCAGCATCCCCCAATTCT >74675_74675_6_RNF10-CCDC60_RNF10_chr12_120984404_ENST00000413266_CCDC60_chr12_119866488_ENST00000539847_length(amino acids)=145AA_BP=118 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYPKNESFNNQSRRSSSQKSK -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for RNF10-CCDC60 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Hgene | RNF10 | chr12:120984404 | chr12:119866488 | ENST00000325954 | - | 2 | 17 | 101_185 | 118.0 | 812.0 | MEOX2 |
| Hgene | RNF10 | chr12:120984404 | chr12:119866488 | ENST00000413266 | - | 2 | 17 | 101_185 | 118.0 | 817.0 | MEOX2 |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for RNF10-CCDC60 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for RNF10-CCDC60 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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