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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SIRT7-CCDC57 (FusionGDB2 ID:82011)

Fusion Gene Summary for SIRT7-CCDC57

check button Fusion gene summary
Fusion gene informationFusion gene name: SIRT7-CCDC57
Fusion gene ID: 82011
HgeneTgene
Gene symbol

SIRT7

CCDC57

Gene ID

51547

284001

Gene namesirtuin 7coiled-coil domain containing 57
SynonymsSIR2L7-
Cytomap

17q25.3

17q25.3

Type of geneprotein-codingprotein-coding
DescriptionNAD-dependent protein deacetylase sirtuin-7NAD-dependent deacetylase sirtuin-7SIR2-like protein 7regulatory protein SIR2 homolog 7silent mating type information regulation 2, S.cerevisiae, homolog 7sir2-related protein type 7sirtuin type 7coiled-coil domain-containing protein 57
Modification date2020032020200313
UniProtAcc.

Q2TAC2

Ensembl transtripts involved in fusion geneENST00000328666, ENST00000327026, 
ENST00000392343, ENST00000392346, 
ENST00000389641, ENST00000392347, 
Fusion gene scores* DoF score5 X 5 X 3=7519 X 12 X 13=2964
# samples 422
** MAII scorelog2(4/75*10)=-0.906890595608519
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(22/2964*10)=-3.75197001878117
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SIRT7 [Title/Abstract] AND CCDC57 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSIRT7(79872170)-CCDC57(80059742), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneSIRT7

GO:0000122

negative regulation of transcription by RNA polymerase II

22722849

HgeneSIRT7

GO:0006282

regulation of DNA repair

27436229|30944854

HgeneSIRT7

GO:0006476

protein deacetylation

24207024|26867678|28426094|28790157|28886238|30540930|30944854|31075303

HgeneSIRT7

GO:0006974

cellular response to DNA damage stimulus

27436229|30944854

HgeneSIRT7

GO:0016570

histone modification

27436229

HgeneSIRT7

GO:0031397

negative regulation of protein ubiquitination

28886238

HgeneSIRT7

GO:0036049

peptidyl-lysine desuccinylation

27436229

HgeneSIRT7

GO:0045944

positive regulation of transcription by RNA polymerase II

28426094

HgeneSIRT7

GO:0061698

protein deglutarylation

31542297

HgeneSIRT7

GO:0070932

histone H3 deacetylation

22722849|26907567|28655758|30420520|30653310

HgeneSIRT7

GO:1901836

regulation of transcription of nucleolar large rRNA by RNA polymerase I

24207024

HgeneSIRT7

GO:1990258

histone glutamine methylation

30540930

HgeneSIRT7

GO:2000234

positive regulation of rRNA processing

26867678


check buttonFusion gene breakpoints across SIRT7 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across CCDC57 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-A7-A13D-01ASIRT7chr17

79872170

-CCDC57chr17

80059742

-


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Fusion Gene ORF analysis for SIRT7-CCDC57

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000328666ENST00000327026SIRT7chr17

79872170

-CCDC57chr17

80059742

-
5CDS-intronENST00000328666ENST00000392343SIRT7chr17

79872170

-CCDC57chr17

80059742

-
5CDS-intronENST00000328666ENST00000392346SIRT7chr17

79872170

-CCDC57chr17

80059742

-
In-frameENST00000328666ENST00000389641SIRT7chr17

79872170

-CCDC57chr17

80059742

-
In-frameENST00000328666ENST00000392347SIRT7chr17

79872170

-CCDC57chr17

80059742

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000328666SIRT7chr1779872170-ENST00000392347CCDC57chr1780059742-12768790950316
ENST00000328666SIRT7chr1779872170-ENST00000389641CCDC57chr1780059742-12768790950316

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000328666ENST00000392347SIRT7chr1779872170-CCDC57chr1780059742-0.140428570.8595714
ENST00000328666ENST00000389641SIRT7chr1779872170-CCDC57chr1780059742-0.140428570.8595714

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Fusion Genomic Features for SIRT7-CCDC57


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for SIRT7-CCDC57


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:79872170/chr17:80059742)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.CCDC57

Q2TAC2

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Pleiotropic regulator of centriole duplication, mitosis, and ciliogenesis. Critical interface between centrosome and microtubule-mediated cellular processes. Centriole duplication protein required for recruitment of CEP63, CEP152, and PLK4 to the centrosome. Independent of its centrosomal targeting, localizes to and interacts with microtubules and regulates microtubule nucleation, stability, and mitotic progression. {ECO:0000269|PubMed:32402286}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSIRT7chr17:79872170chr17:80059742ENST00000328666-7108_74272401.0Compositional biasNote=Arg-rich
HgeneSIRT7chr17:79872170chr17:80059742ENST00000328666-710107_126272401.0Nucleotide bindingNAD
HgeneSIRT7chr17:79872170chr17:80059742ENST00000328666-710167_170272401.0Nucleotide bindingNAD
HgeneSIRT7chr17:79872170chr17:80059742ENST00000328666-710268_270272401.0Nucleotide bindingNAD
TgeneCCDC57chr17:79872170chr17:80059742ENST00000392343015214_4220752.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST00000392343015456_4830752.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST00000392343015521_5480752.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST0000039234301592_1730752.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST000003923430151_5020752.0RegionCentrosomal targeting domain
TgeneCCDC57chr17:79872170chr17:80059742ENST00000392343015606_9150752.0RegionMicrotubule binding domain

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSIRT7chr17:79872170chr17:80059742ENST00000328666-71090_331272401.0DomainDeacetylase sirtuin-type
HgeneSIRT7chr17:79872170chr17:80059742ENST00000328666-710297_299272401.0Nucleotide bindingNAD
TgeneCCDC57chr17:79872170chr17:80059742ENST000003896411618214_422855917.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST000003896411618456_483855917.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST000003896411618521_548855917.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST00000389641161892_173855917.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST000003923471517214_422855917.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST000003923471517456_483855917.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST000003923471517521_548855917.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST00000392347151792_173855917.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC57chr17:79872170chr17:80059742ENST0000038964116181_502855917.0RegionCentrosomal targeting domain
TgeneCCDC57chr17:79872170chr17:80059742ENST000003896411618606_915855917.0RegionMicrotubule binding domain
TgeneCCDC57chr17:79872170chr17:80059742ENST0000039234715171_502855917.0RegionCentrosomal targeting domain
TgeneCCDC57chr17:79872170chr17:80059742ENST000003923471517606_915855917.0RegionMicrotubule binding domain


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Fusion Gene Sequence for SIRT7-CCDC57


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>82011_82011_1_SIRT7-CCDC57_SIRT7_chr17_79872170_ENST00000328666_CCDC57_chr17_80059742_ENST00000389641_length(transcript)=1276nt_BP=879nt
ATGCGCCCTGAGCGCGGCCTGCCGTGTGAGGCGGAAGCGGAAGAGCAGGTCTCCAGGGGAGCGATGGCAGCCGGGGGTCTGAGCCGCTCC
GAGCGCAAAGCGGCGGAGCGGGTCCGGAGGTTGCGGGAGGAGCAGCAGAGGGAGCGCCTCCGCCAGGTGTCGCGCATCCTGAGGAAGGCG
GCGGCGGAGCGCAGCGCCGAGGAGGGCCGGCTGCTGGCCGAGAGCGCGGACCTGGTAACGGAGCTGCAGGGCCGGAGCCGGCGGCGCGAG
GGCCTGAAGCGGCGGCAGGAGGAGGTGTGCGACGACCCGGAGGAGCTGCGGGGGAAGGTCCGGGAGCTGGCCAGCGCCGTCCGGAACGCC
AAATACTTGGTCGTCTACACAGGCGCGGGAATCAGCACGGCAGCGTCTATCCCAGACTACCGGGGCCCTAATGGAGTGTGGACACTGCTT
CAGAAAGGGAGAAGCGTTAGTGCTGCCGACCTGAGCGAGGCCGAGCCAACCCTCACCCACATGAGCATCACCCGTCTGCATGAGCAGAAG
CTGGTGCAGCATGTGGTGTCTCAGAACTGTGACGGGCTCCACCTGAGGAGTGGGCTGCCGCGCACGGCCATCTCCGAGCTCCACGGGAAC
ATGTACATTGAAGTCTGTACCTCCTGCGTTCCCAACAGGGAGTACGTGCGGGTGTTCGATGTGACGGAGCGCACTGCCCTCCACAGACAC
CAGACAGGCCGGACCTGCCACAAGTGTGGGACCCAGCTGCGGGACACCATTGTGCACTTTGGGGAGAGGGGGACGTTGGGGCAGCCTTTG
AACTGGGAAGCGGCGACCGAGGCTGCCAGCAGAGCAGACACCATCCTGTGTCTAGGGTCCAGCCTGAAGAGCTCCCAGCTCCTCCAGCAG
CCGACAGGAGGCCCGTCAAGATGCAGGCAGGCATTGCCACCCCAGGGATGAAGACAGCAGCCCAGGCAAAGGCCAAGACCACAGGAGCCT
CCCGGTCTCATCCTGCAAAAGCTAAAGGCTGCCAGAGGCCCCCCAAGATCCGTAACTACAACATTATGGACTGACTTCCTCCCCCCACCC
CGCCCCACTAAGGGGTGCTCGGGGCCTCCGCATGGTGCCTGTGCTTTCACCTACGTGTTGTGGGGGGGTGTGGGCACAGCGTGCAGGGTG
GAGGCAGGGAGCTGCAGGGCAGGCTCCCAAATGCTGCTGAGGCGACCCTGCTGACTGAAGGCCTCCCTGAGCACAGGGCCCATTAAAACC

>82011_82011_1_SIRT7-CCDC57_SIRT7_chr17_79872170_ENST00000328666_CCDC57_chr17_80059742_ENST00000389641_length(amino acids)=316AA_BP=293
MRPERGLPCEAEAEEQVSRGAMAAGGLSRSERKAAERVRRLREEQQRERLRQVSRILRKAAAERSAEEGRLLAESADLVTELQGRSRRRE
GLKRRQEEVCDDPEELRGKVRELASAVRNAKYLVVYTGAGISTAASIPDYRGPNGVWTLLQKGRSVSAADLSEAEPTLTHMSITRLHEQK
LVQHVVSQNCDGLHLRSGLPRTAISELHGNMYIEVCTSCVPNREYVRVFDVTERTALHRHQTGRTCHKCGTQLRDTIVHFGERGTLGQPL

--------------------------------------------------------------
>82011_82011_2_SIRT7-CCDC57_SIRT7_chr17_79872170_ENST00000328666_CCDC57_chr17_80059742_ENST00000392347_length(transcript)=1276nt_BP=879nt
ATGCGCCCTGAGCGCGGCCTGCCGTGTGAGGCGGAAGCGGAAGAGCAGGTCTCCAGGGGAGCGATGGCAGCCGGGGGTCTGAGCCGCTCC
GAGCGCAAAGCGGCGGAGCGGGTCCGGAGGTTGCGGGAGGAGCAGCAGAGGGAGCGCCTCCGCCAGGTGTCGCGCATCCTGAGGAAGGCG
GCGGCGGAGCGCAGCGCCGAGGAGGGCCGGCTGCTGGCCGAGAGCGCGGACCTGGTAACGGAGCTGCAGGGCCGGAGCCGGCGGCGCGAG
GGCCTGAAGCGGCGGCAGGAGGAGGTGTGCGACGACCCGGAGGAGCTGCGGGGGAAGGTCCGGGAGCTGGCCAGCGCCGTCCGGAACGCC
AAATACTTGGTCGTCTACACAGGCGCGGGAATCAGCACGGCAGCGTCTATCCCAGACTACCGGGGCCCTAATGGAGTGTGGACACTGCTT
CAGAAAGGGAGAAGCGTTAGTGCTGCCGACCTGAGCGAGGCCGAGCCAACCCTCACCCACATGAGCATCACCCGTCTGCATGAGCAGAAG
CTGGTGCAGCATGTGGTGTCTCAGAACTGTGACGGGCTCCACCTGAGGAGTGGGCTGCCGCGCACGGCCATCTCCGAGCTCCACGGGAAC
ATGTACATTGAAGTCTGTACCTCCTGCGTTCCCAACAGGGAGTACGTGCGGGTGTTCGATGTGACGGAGCGCACTGCCCTCCACAGACAC
CAGACAGGCCGGACCTGCCACAAGTGTGGGACCCAGCTGCGGGACACCATTGTGCACTTTGGGGAGAGGGGGACGTTGGGGCAGCCTTTG
AACTGGGAAGCGGCGACCGAGGCTGCCAGCAGAGCAGACACCATCCTGTGTCTAGGGTCCAGCCTGAAGAGCTCCCAGCTCCTCCAGCAG
CCGACAGGAGGCCCGTCAAGATGCAGGCAGGCATTGCCACCCCAGGGATGAAGACAGCAGCCCAGGCAAAGGCCAAGACCACAGGAGCCT
CCCGGTCTCATCCTGCAAAAGCTAAAGGCTGCCAGAGGCCCCCCAAGATCCGTAACTACAACATTATGGACTGACTTCCTCCCCCCACCC
CGCCCCACTAAGGGGTGCTCGGGGCCTCCGCATGGTGCCTGTGCTTTCACCTACGTGTTGTGGGGGGGTGTGGGCACAGCGTGCAGGGTG
GAGGCAGGGAGCTGCAGGGCAGGCTCCCAAATGCTGCTGAGGCGACCCTGCTGACTGAAGGCCTCCCTGAGCACAGGGCCCATTAAAACC

>82011_82011_2_SIRT7-CCDC57_SIRT7_chr17_79872170_ENST00000328666_CCDC57_chr17_80059742_ENST00000392347_length(amino acids)=316AA_BP=293
MRPERGLPCEAEAEEQVSRGAMAAGGLSRSERKAAERVRRLREEQQRERLRQVSRILRKAAAERSAEEGRLLAESADLVTELQGRSRRRE
GLKRRQEEVCDDPEELRGKVRELASAVRNAKYLVVYTGAGISTAASIPDYRGPNGVWTLLQKGRSVSAADLSEAEPTLTHMSITRLHEQK
LVQHVVSQNCDGLHLRSGLPRTAISELHGNMYIEVCTSCVPNREYVRVFDVTERTALHRHQTGRTCHKCGTQLRDTIVHFGERGTLGQPL

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Fusion Gene PPI Analysis for SIRT7-CCDC57


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SIRT7-CCDC57


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SIRT7-CCDC57


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource