FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:SLC12A7-CLPTM1L (FusionGDB2 ID:82233)

Fusion Gene Summary for SLC12A7-CLPTM1L

check button Fusion gene summary
Fusion gene informationFusion gene name: SLC12A7-CLPTM1L
Fusion gene ID: 82233
HgeneTgene
Gene symbol

SLC12A7

CLPTM1L

Gene ID

10723

81037

Gene namesolute carrier family 12 member 7CLPTM1 like
SynonymsKCC4CRR9
Cytomap

5p15.33

5p15.33

Type of geneprotein-codingprotein-coding
Descriptionsolute carrier family 12 member 7K-Cl cotransporter 4SUCO/SLC12A7 fusionelectroneutral potassium-chloride cotransporter 4potassium/chloride transporter KCC4solute carrier family 12 (potassium/chloride transporter), member 7solute carrier family 12 (cleft lip and palate transmembrane protein 1-like proteinCLPTM1-like proteincisplatin resistance related protein CRR9pcisplatin resistance-related protein 9
Modification date2020031320200313
UniProtAcc.

Q96KA5

Ensembl transtripts involved in fusion geneENST00000264930, ENST00000506641, 
ENST00000320895, ENST00000320927, 
ENST00000507807, 
Fusion gene scores* DoF score17 X 16 X 8=217615 X 11 X 8=1320
# samples 2117
** MAII scorelog2(21/2176*10)=-3.37321732358422
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(17/1320*10)=-2.95693127810811
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SLC12A7 [Title/Abstract] AND CLPTM1L [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSLC12A7(1073748)-CLPTM1L(1331998), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across SLC12A7 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across CLPTM1L (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LIHCTCGA-BC-A10R-01ASLC12A7chr5

1073748

-CLPTM1Lchr5

1331998

-


Top

Fusion Gene ORF analysis for SLC12A7-CLPTM1L

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000264930ENST00000506641SLC12A7chr5

1073748

-CLPTM1Lchr5

1331998

-
In-frameENST00000264930ENST00000320895SLC12A7chr5

1073748

-CLPTM1Lchr5

1331998

-
In-frameENST00000264930ENST00000320927SLC12A7chr5

1073748

-CLPTM1Lchr5

1331998

-
In-frameENST00000264930ENST00000507807SLC12A7chr5

1073748

-CLPTM1Lchr5

1331998

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000264930SLC12A7chr51073748-ENST00000320895CLPTM1Lchr51331998-36362285323010992
ENST00000264930SLC12A7chr51073748-ENST00000507807CLPTM1Lchr51331998-35192285322902956
ENST00000264930SLC12A7chr51073748-ENST00000320927CLPTM1Lchr51331998-34042285322902956

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000264930ENST00000320895SLC12A7chr51073748-CLPTM1Lchr51331998-0.0008169060.9991831
ENST00000264930ENST00000507807SLC12A7chr51073748-CLPTM1Lchr51331998-0.0009001310.99909985
ENST00000264930ENST00000320927SLC12A7chr51073748-CLPTM1Lchr51331998-0.0010392990.99896073

Top

Fusion Genomic Features for SLC12A7-CLPTM1L


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for SLC12A7-CLPTM1L


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr5:1073748/chr5:1331998)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.CLPTM1L

Q96KA5

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Enhances cisplatin-mediated apoptosis, when overexpressed. {ECO:0000269|PubMed:11162647}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724162_2147471084.0Topological domainCytoplasmic
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-17241_1187471084.0Topological domainCytoplasmic
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724274_2757471084.0Topological domainCytoplasmic
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724437_4567471084.0Topological domainCytoplasmic
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724515_5537471084.0Topological domainCytoplasmic
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724599_6247471084.0Topological domainCytoplasmic
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724119_1397471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724141_1617471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724215_2357471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724253_2737471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724276_2967471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724416_4367471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724457_4777471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724494_5147471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724554_5747471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724578_5987471084.0TransmembraneHelical
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724625_6457471084.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617306_324297539.0Topological domainCytoplasmic
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617343_346297539.0Topological domainExtracellular
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617365_402297539.0Topological domainCytoplasmic
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617424_428297539.0Topological domainExtracellular
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617450_538297539.0Topological domainCytoplasmic
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616306_324297503.0Topological domainCytoplasmic
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616343_346297503.0Topological domainExtracellular
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616365_402297503.0Topological domainCytoplasmic
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616424_428297503.0Topological domainExtracellular
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616450_538297503.0Topological domainCytoplasmic
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617325_342297539.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617347_364297539.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617403_423297539.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617429_449297539.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616325_342297503.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616347_364297503.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616403_423297503.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616429_449297503.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724866_10837471084.0Topological domainCytoplasmic
HgeneSLC12A7chr5:1073748chr5:1331998ENST00000264930-1724845_8657471084.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST000003208956171_10297539.0Topological domainCytoplasmic
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST0000032089561732_284297539.0Topological domainExtracellular
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST000003209276161_10297503.0Topological domainCytoplasmic
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST0000032092761632_284297503.0Topological domainExtracellular
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST0000032089561711_31297539.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320895617285_305297539.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST0000032092761611_31297503.0TransmembraneHelical
TgeneCLPTM1Lchr5:1073748chr5:1331998ENST00000320927616285_305297503.0TransmembraneHelical


Top

Fusion Gene Sequence for SLC12A7-CLPTM1L


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>82233_82233_1_SLC12A7-CLPTM1L_SLC12A7_chr5_1073748_ENST00000264930_CLPTM1L_chr5_1331998_ENST00000320895_length(transcript)=3636nt_BP=2285nt
AGCGCGGGCCGGGCCGGGACGGGGACTGTCGGCTGCAGGCGGCCATGCCCACCAACTTCACCGTGGTGCCCGTGGAGGCTCACGCCGACG
GCGGCGGGGACGAGACTGCCGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGGGAGATGGAAATC
CAAGAGAAAACAGCCCATTCCTCAACAATGTCGAGGTGGAACAAGAGAGCTTCTTTGAAGGGAAGAACATGGCACTTTTCGAGGAGGAGA
TGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACG
AGGAGAGCCGGCGGCGGGAGGCCAAGGCTCCGCGCATGGGCACCTTCATCGGCGTCTACCTGCCGTGCCTGCAGAACATCCTGGGCGTCA
TCCTCTTCCTGCGCCTGACGTGGATCGTGGGGGTGGCTGGTGTCCTGGAGTCCTTCCTCATCGTGGCCATGTGCTGCACATGTACAATGC
TGACCGCCATTTCCATGAGTGCGATCGCTACCAACGGTGTGGTCCCAGCTGGCGGGTCCTACTACATGATATCGCGCTCGCTGGGACCCG
AGTTTGGAGGCGCTGTCGGCCTCTGCTTCTACCTGGGCACGACGTTTGCAGGGGCCATGTATATTTTGGGGACCATCGAGATTTTTCTGA
CGTACATCTCCCCGGGTGCGGCCATCTTCCAGGCGGAGGCTGCAGGTGGCGAGGCGGCCGCCATGCTGCACAACATGCGTGTGTACGGCA
CGTGCACGCTCGTGCTCATGGCCCTGGTGGTCTTCGTGGGCGTCAAGTATGTCAACAAGCTGGCGCTGGTCTTCCTGGCCTGCGTCGTGC
TGTCCATCCTGGCCATCTATGCCGGCGTCATCAAGTCTGCCTTCGACCCCCCGGACATCCCGGTCTGCCTCCTGGGGAACCGCACGCTGT
CACGGCGCAGCTTCGATGCCTGCGTCAAGGCCTACGGCATCCACAACAACTCAGCCACCTCCGCGCTCTGGGGCCTCTTCTGCAACGGCT
CCCAGCCCAGCGCCGCCTGTGACGAGTACTTCATCCAGAACAACGTCACCGAAATCCAGGGCATCCCGGGCGCGGCCAGTGGTGTCTTCC
TGGAGAACCTGTGGAGTACGTACGCGCACGCGGGGGCGTTTGTGGAGAAGAAAGGTGTGCCCTCGGTGCCCGTGGCAGAGGAGAGCCGTG
CCAGCGCACTGCCCTACGTGCTCACCGACATCGCGGCCTCCTTCACCCTGCTGGTTGGCATCTACTTCCCTTCCGTGACCGGTATCATGG
CGGGTTCAAACCGGTCCGGGGACCTCAAGGATGCACAGAAGTCCATCCCCACGGGGACCATCCTGGCCATAGTGACGACGTCTTTCATCT
ATCTCTCCTGCATTGTGCTGTTTGGGGCCTGCATTGAAGGCGTGGTCTTACGAGATAAGTTCGGGGAGGCCCTGCAGGGGAACCTGGTCA
TCGGCATGCTGGCCTGGCCCTCCCCCTGGGTCATCGTCATCGGCTCCTTCTTCTCCACCTGCGGTGCCGGCCTGCAGAGCCTCACGGGGG
CACCGCGCCTACTGCAGGCCATTGCCCGTGACGGCATCGTCCCCTTCCTGCAGGTGTTTGGCCACGGGAAGGCCAACGGGGAGCCCACGT
GGGCGCTGCTGCTGACAGTCCTCATCTGCGAGACTGGCATCCTCATCGCCTCTCTGGACAGCGTGGCCCCGATCCTCTCCATGTTCTTCC
TCATGTGCTACCTGTTCGTGAACCTGGCCTGCGCCGTGCAGACCCTGCTACGTACCCCCAACTGGCGTCCACGCTTCAAGTTCTACCACT
GGACCCTGTCCTTTCTGGGTATGAGCCTGTGCCTGGCGCTGATGTTCATCTGCTCCTGGTACTACGCGCTGTCCGCCATGCTCATCGCTG
GCTGCATCTACAAGTACATCGAGTACCGCGGGGCCGAGAAGGAGTGGGGCGATGGCATCCGTGGCCTATCCCTGAACGCCGCCCGCTACG
CCCTGCTGCGCGTGGAGCACGGTCCCCCCCACACCAAGAACTGGAGGCCCCAGGTGCTGGTGATGCTGAACCTGGACGCGGAGCAGGCCG
TGAAGCACCCCCGCCTGCTGTCCTTCACGTCGCAGCTGAAGGCCGGCAAGGGCCTGACCATCGTGGGCTCGGTGCTGGAGGGGACGTACC
TGGACAAGCACATGGAGGCTCAGCGGGCCGAGGAGCTTCTCTTTGATTTCCTGGCCTTTAAAAATGACATCAGTTTCTGGAAGAAGAAGA
AGAGCATGATCGGCATGTCCACCAAGGCAGTGCTCTGGCGCTGCTTCAGCACCGTGGTCATCTTTCTGTTCCTGCTGGACGAGCAGACGA
GCCTGCTGGTGCTGGTCCCGGCGGGTGTTGGAGCCGCCATTGAGCTGTGGAAAGTGAAGAAGGCATTGAAGATGACTATTTTTTGGAGAG
GCCTGATGCCCGAATTTCAGTTTGGCACTTACAGCGAATCTGAGAGGAAAACCGAGGAGTACGATACTCAGGCCATGAAGTACTTGTCAT
ACCTGCTGTACCCTCTCTGTGTCGGGGGTGCTGTCTATTCACTCCTGAATATCAAATATAAGAGCTGGTACTCCTGGTTAATCAACAGCT
TCGTCAACGGGGTCTATGCCTTTGGTTTCCTCTTCATGCTGCCCCAGCTCTTTGTGAACTACAAGTTGAAGTCAGTGGCACATCTGCCCT
GGAAGGCCTTCACCTACAAGGCTTTCAACACCTTCATTGATGACGTCTTTGCCTTCATCATCACCATGCCCACGTCTCACCGGCTGGCCT
GCTTCCGGGACGACGTGGTGTTTCTGGTCTACCTGTACCAGCGGTGGCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGT
CCTACGAGGAGAAGGCCACGCGGGCGCCCCACACGGACTGAAGGCCGCCCGGGCTGCCGCCAGCCAAGTGCAACTTGAATTGTCAATGAG
TATTTTTGGAAGCATTTGGAGGAATTCCTAGACATTGCGTTTTCTGTGTTGCCAAAATCCCTTCGGACATTTCTCAGACATCTCCCAAGT
TCCCATCACGTCAGATTTGGAGCTGGTAGCGCTTACGATGCCCCCACGTGTGAACATCTGTCTTGGTCACAGAGCTGGGTGCTGCCGGTC
ACCTTGAGCTGTGGTGGCTCCCGGCACACGAGTGTCCGGGGTTCGGCCATGTCCTCACGCGGGCAGGGGTGGGAGCCCTCACAGGCAAGG
GGGCTGTTGGATTTCCATTTCAGGTGGTTTTCTAAGTGCTCCTTATGTGAATTTCAAACACGTATGGAATTCATTCCGCATGGACTCTGG
GATCAAAGGCTCTTTCCTCTTTTGTTTGAGAGTTGGTTGTTTTAAAGCTTAATGTATGTTTCTATTTTAAAATAAATTTTTCTGGCTGTG
GCATTTTTCTTGACCTGGTATAATGAAAGTATTTCGGATATTTGAGTTTAACCCTTTTCCAGAAAGTAATACATGATATGGATTTATTTA

>82233_82233_1_SLC12A7-CLPTM1L_SLC12A7_chr5_1073748_ENST00000264930_CLPTM1L_chr5_1331998_ENST00000320895_length(amino acids)=992AA_BP=751
MQAAMPTNFTVVPVEAHADGGGDETAERTEAPGTPEGPEPERPSPGDGNPRENSPFLNNVEVEQESFFEGKNMALFEEEMDSNPMVSSLL
NKLANYTNLSQGVVEHEEDEESRRREAKAPRMGTFIGVYLPCLQNILGVILFLRLTWIVGVAGVLESFLIVAMCCTCTMLTAISMSAIAT
NGVVPAGGSYYMISRSLGPEFGGAVGLCFYLGTTFAGAMYILGTIEIFLTYISPGAAIFQAEAAGGEAAAMLHNMRVYGTCTLVLMALVV
FVGVKYVNKLALVFLACVVLSILAIYAGVIKSAFDPPDIPVCLLGNRTLSRRSFDACVKAYGIHNNSATSALWGLFCNGSQPSAACDEYF
IQNNVTEIQGIPGAASGVFLENLWSTYAHAGAFVEKKGVPSVPVAEESRASALPYVLTDIAASFTLLVGIYFPSVTGIMAGSNRSGDLKD
AQKSIPTGTILAIVTTSFIYLSCIVLFGACIEGVVLRDKFGEALQGNLVIGMLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARD
GIVPFLQVFGHGKANGEPTWALLLTVLICETGILIASLDSVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLC
LALMFICSWYYALSAMLIAGCIYKYIEYRGAEKEWGDGIRGLSLNAARYALLRVEHGPPHTKNWRPQVLVMLNLDAEQAVKHPRLLSFTS
QLKAGKGLTIVGSVLEGTYLDKHMEAQRAEELLFDFLAFKNDISFWKKKKSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLVLVPAGVG
AAIELWKVKKALKMTIFWRGLMPEFQFGTYSESERKTEEYDTQAMKYLSYLLYPLCVGGAVYSLLNIKYKSWYSWLINSFVNGVYAFGFL
FMLPQLFVNYKLKSVAHLPWKAFTYKAFNTFIDDVFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYPVDKRRVNEFGESYEEKATRAPH

--------------------------------------------------------------
>82233_82233_2_SLC12A7-CLPTM1L_SLC12A7_chr5_1073748_ENST00000264930_CLPTM1L_chr5_1331998_ENST00000320927_length(transcript)=3404nt_BP=2285nt
AGCGCGGGCCGGGCCGGGACGGGGACTGTCGGCTGCAGGCGGCCATGCCCACCAACTTCACCGTGGTGCCCGTGGAGGCTCACGCCGACG
GCGGCGGGGACGAGACTGCCGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGGGAGATGGAAATC
CAAGAGAAAACAGCCCATTCCTCAACAATGTCGAGGTGGAACAAGAGAGCTTCTTTGAAGGGAAGAACATGGCACTTTTCGAGGAGGAGA
TGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACG
AGGAGAGCCGGCGGCGGGAGGCCAAGGCTCCGCGCATGGGCACCTTCATCGGCGTCTACCTGCCGTGCCTGCAGAACATCCTGGGCGTCA
TCCTCTTCCTGCGCCTGACGTGGATCGTGGGGGTGGCTGGTGTCCTGGAGTCCTTCCTCATCGTGGCCATGTGCTGCACATGTACAATGC
TGACCGCCATTTCCATGAGTGCGATCGCTACCAACGGTGTGGTCCCAGCTGGCGGGTCCTACTACATGATATCGCGCTCGCTGGGACCCG
AGTTTGGAGGCGCTGTCGGCCTCTGCTTCTACCTGGGCACGACGTTTGCAGGGGCCATGTATATTTTGGGGACCATCGAGATTTTTCTGA
CGTACATCTCCCCGGGTGCGGCCATCTTCCAGGCGGAGGCTGCAGGTGGCGAGGCGGCCGCCATGCTGCACAACATGCGTGTGTACGGCA
CGTGCACGCTCGTGCTCATGGCCCTGGTGGTCTTCGTGGGCGTCAAGTATGTCAACAAGCTGGCGCTGGTCTTCCTGGCCTGCGTCGTGC
TGTCCATCCTGGCCATCTATGCCGGCGTCATCAAGTCTGCCTTCGACCCCCCGGACATCCCGGTCTGCCTCCTGGGGAACCGCACGCTGT
CACGGCGCAGCTTCGATGCCTGCGTCAAGGCCTACGGCATCCACAACAACTCAGCCACCTCCGCGCTCTGGGGCCTCTTCTGCAACGGCT
CCCAGCCCAGCGCCGCCTGTGACGAGTACTTCATCCAGAACAACGTCACCGAAATCCAGGGCATCCCGGGCGCGGCCAGTGGTGTCTTCC
TGGAGAACCTGTGGAGTACGTACGCGCACGCGGGGGCGTTTGTGGAGAAGAAAGGTGTGCCCTCGGTGCCCGTGGCAGAGGAGAGCCGTG
CCAGCGCACTGCCCTACGTGCTCACCGACATCGCGGCCTCCTTCACCCTGCTGGTTGGCATCTACTTCCCTTCCGTGACCGGTATCATGG
CGGGTTCAAACCGGTCCGGGGACCTCAAGGATGCACAGAAGTCCATCCCCACGGGGACCATCCTGGCCATAGTGACGACGTCTTTCATCT
ATCTCTCCTGCATTGTGCTGTTTGGGGCCTGCATTGAAGGCGTGGTCTTACGAGATAAGTTCGGGGAGGCCCTGCAGGGGAACCTGGTCA
TCGGCATGCTGGCCTGGCCCTCCCCCTGGGTCATCGTCATCGGCTCCTTCTTCTCCACCTGCGGTGCCGGCCTGCAGAGCCTCACGGGGG
CACCGCGCCTACTGCAGGCCATTGCCCGTGACGGCATCGTCCCCTTCCTGCAGGTGTTTGGCCACGGGAAGGCCAACGGGGAGCCCACGT
GGGCGCTGCTGCTGACAGTCCTCATCTGCGAGACTGGCATCCTCATCGCCTCTCTGGACAGCGTGGCCCCGATCCTCTCCATGTTCTTCC
TCATGTGCTACCTGTTCGTGAACCTGGCCTGCGCCGTGCAGACCCTGCTACGTACCCCCAACTGGCGTCCACGCTTCAAGTTCTACCACT
GGACCCTGTCCTTTCTGGGTATGAGCCTGTGCCTGGCGCTGATGTTCATCTGCTCCTGGTACTACGCGCTGTCCGCCATGCTCATCGCTG
GCTGCATCTACAAGTACATCGAGTACCGCGGGGCCGAGAAGGAGTGGGGCGATGGCATCCGTGGCCTATCCCTGAACGCCGCCCGCTACG
CCCTGCTGCGCGTGGAGCACGGTCCCCCCCACACCAAGAACTGGAGGCCCCAGGTGCTGGTGATGCTGAACCTGGACGCGGAGCAGGCCG
TGAAGCACCCCCGCCTGCTGTCCTTCACGTCGCAGCTGAAGGCCGGCAAGGGCCTGACCATCGTGGGCTCGGTGCTGGAGGGGACGTACC
TGGACAAGCACATGGAGGCTCAGCGGGCCGAGGAGCTTCTCTTTGATTTCCTGGCCTTTAAAAATGACATCAGTTTCTGGAAGAAGAAGA
AGAGCATGATCGGCATGTCCACCAAGCTGTGGAAAGTGAAGAAGGCATTGAAGATGACTATTTTTTGGAGAGGCCTGATGCCCGAATTTC
AGTTTGGCACTTACAGCGAATCTGAGAGGAAAACCGAGGAGTACGATACTCAGGCCATGAAGTACTTGTCATACCTGCTGTACCCTCTCT
GTGTCGGGGGTGCTGTCTATTCACTCCTGAATATCAAATATAAGAGCTGGTACTCCTGGTTAATCAACAGCTTCGTCAACGGGGTCTATG
CCTTTGGTTTCCTCTTCATGCTGCCCCAGCTCTTTGTGAACTACAAGTTGAAGTCAGTGGCACATCTGCCCTGGAAGGCCTTCACCTACA
AGGCTTTCAACACCTTCATTGATGACGTCTTTGCCTTCATCATCACCATGCCCACGTCTCACCGGCTGGCCTGCTTCCGGGACGACGTGG
TGTTTCTGGTCTACCTGTACCAGCGGTGGCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGGCCA
CGCGGGCGCCCCACACGGACTGAAGGCCGCCCGGGCTGCCGCCAGCCAAGTGCAACTTGAATTGTCAATGAGTATTTTTGGAAGCATTTG
GAGGAATTCCTAGACATTGCGTTTTCTGTGTTGCCAAAATCCCTTCGGACATTTCTCAGACATCTCCCAAGTTCCCATCACGTCAGATTT
GGAGCTGGTAGCGCTTACGATGCCCCCACGTGTGAACATCTGTCTTGGTCACAGAGCTGGGTGCTGCCGGTCACCTTGAGCTGTGGTGGC
TCCCGGCACACGAGTGTCCGGGGTTCGGCCATGTCCTCACGCGGGCAGGGGTGGGAGCCCTCACAGGCAAGGGGGCTGTTGGATTTCCAT
TTCAGGTGGTTTTCTAAGTGCTCCTTATGTGAATTTCAAACACGTATGGAATTCATTCCGCATGGACTCTGGGATCAAAGGCTCTTTCCT

>82233_82233_2_SLC12A7-CLPTM1L_SLC12A7_chr5_1073748_ENST00000264930_CLPTM1L_chr5_1331998_ENST00000320927_length(amino acids)=956AA_BP=751
MQAAMPTNFTVVPVEAHADGGGDETAERTEAPGTPEGPEPERPSPGDGNPRENSPFLNNVEVEQESFFEGKNMALFEEEMDSNPMVSSLL
NKLANYTNLSQGVVEHEEDEESRRREAKAPRMGTFIGVYLPCLQNILGVILFLRLTWIVGVAGVLESFLIVAMCCTCTMLTAISMSAIAT
NGVVPAGGSYYMISRSLGPEFGGAVGLCFYLGTTFAGAMYILGTIEIFLTYISPGAAIFQAEAAGGEAAAMLHNMRVYGTCTLVLMALVV
FVGVKYVNKLALVFLACVVLSILAIYAGVIKSAFDPPDIPVCLLGNRTLSRRSFDACVKAYGIHNNSATSALWGLFCNGSQPSAACDEYF
IQNNVTEIQGIPGAASGVFLENLWSTYAHAGAFVEKKGVPSVPVAEESRASALPYVLTDIAASFTLLVGIYFPSVTGIMAGSNRSGDLKD
AQKSIPTGTILAIVTTSFIYLSCIVLFGACIEGVVLRDKFGEALQGNLVIGMLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARD
GIVPFLQVFGHGKANGEPTWALLLTVLICETGILIASLDSVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLC
LALMFICSWYYALSAMLIAGCIYKYIEYRGAEKEWGDGIRGLSLNAARYALLRVEHGPPHTKNWRPQVLVMLNLDAEQAVKHPRLLSFTS
QLKAGKGLTIVGSVLEGTYLDKHMEAQRAEELLFDFLAFKNDISFWKKKKSMIGMSTKLWKVKKALKMTIFWRGLMPEFQFGTYSESERK
TEEYDTQAMKYLSYLLYPLCVGGAVYSLLNIKYKSWYSWLINSFVNGVYAFGFLFMLPQLFVNYKLKSVAHLPWKAFTYKAFNTFIDDVF

--------------------------------------------------------------
>82233_82233_3_SLC12A7-CLPTM1L_SLC12A7_chr5_1073748_ENST00000264930_CLPTM1L_chr5_1331998_ENST00000507807_length(transcript)=3519nt_BP=2285nt
AGCGCGGGCCGGGCCGGGACGGGGACTGTCGGCTGCAGGCGGCCATGCCCACCAACTTCACCGTGGTGCCCGTGGAGGCTCACGCCGACG
GCGGCGGGGACGAGACTGCCGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGGGAGATGGAAATC
CAAGAGAAAACAGCCCATTCCTCAACAATGTCGAGGTGGAACAAGAGAGCTTCTTTGAAGGGAAGAACATGGCACTTTTCGAGGAGGAGA
TGGACAGTAACCCCATGGTGTCCTCGCTGCTCAACAAGCTGGCCAACTACACCAACCTGAGCCAGGGCGTGGTGGAGCACGAGGAGGACG
AGGAGAGCCGGCGGCGGGAGGCCAAGGCTCCGCGCATGGGCACCTTCATCGGCGTCTACCTGCCGTGCCTGCAGAACATCCTGGGCGTCA
TCCTCTTCCTGCGCCTGACGTGGATCGTGGGGGTGGCTGGTGTCCTGGAGTCCTTCCTCATCGTGGCCATGTGCTGCACATGTACAATGC
TGACCGCCATTTCCATGAGTGCGATCGCTACCAACGGTGTGGTCCCAGCTGGCGGGTCCTACTACATGATATCGCGCTCGCTGGGACCCG
AGTTTGGAGGCGCTGTCGGCCTCTGCTTCTACCTGGGCACGACGTTTGCAGGGGCCATGTATATTTTGGGGACCATCGAGATTTTTCTGA
CGTACATCTCCCCGGGTGCGGCCATCTTCCAGGCGGAGGCTGCAGGTGGCGAGGCGGCCGCCATGCTGCACAACATGCGTGTGTACGGCA
CGTGCACGCTCGTGCTCATGGCCCTGGTGGTCTTCGTGGGCGTCAAGTATGTCAACAAGCTGGCGCTGGTCTTCCTGGCCTGCGTCGTGC
TGTCCATCCTGGCCATCTATGCCGGCGTCATCAAGTCTGCCTTCGACCCCCCGGACATCCCGGTCTGCCTCCTGGGGAACCGCACGCTGT
CACGGCGCAGCTTCGATGCCTGCGTCAAGGCCTACGGCATCCACAACAACTCAGCCACCTCCGCGCTCTGGGGCCTCTTCTGCAACGGCT
CCCAGCCCAGCGCCGCCTGTGACGAGTACTTCATCCAGAACAACGTCACCGAAATCCAGGGCATCCCGGGCGCGGCCAGTGGTGTCTTCC
TGGAGAACCTGTGGAGTACGTACGCGCACGCGGGGGCGTTTGTGGAGAAGAAAGGTGTGCCCTCGGTGCCCGTGGCAGAGGAGAGCCGTG
CCAGCGCACTGCCCTACGTGCTCACCGACATCGCGGCCTCCTTCACCCTGCTGGTTGGCATCTACTTCCCTTCCGTGACCGGTATCATGG
CGGGTTCAAACCGGTCCGGGGACCTCAAGGATGCACAGAAGTCCATCCCCACGGGGACCATCCTGGCCATAGTGACGACGTCTTTCATCT
ATCTCTCCTGCATTGTGCTGTTTGGGGCCTGCATTGAAGGCGTGGTCTTACGAGATAAGTTCGGGGAGGCCCTGCAGGGGAACCTGGTCA
TCGGCATGCTGGCCTGGCCCTCCCCCTGGGTCATCGTCATCGGCTCCTTCTTCTCCACCTGCGGTGCCGGCCTGCAGAGCCTCACGGGGG
CACCGCGCCTACTGCAGGCCATTGCCCGTGACGGCATCGTCCCCTTCCTGCAGGTGTTTGGCCACGGGAAGGCCAACGGGGAGCCCACGT
GGGCGCTGCTGCTGACAGTCCTCATCTGCGAGACTGGCATCCTCATCGCCTCTCTGGACAGCGTGGCCCCGATCCTCTCCATGTTCTTCC
TCATGTGCTACCTGTTCGTGAACCTGGCCTGCGCCGTGCAGACCCTGCTACGTACCCCCAACTGGCGTCCACGCTTCAAGTTCTACCACT
GGACCCTGTCCTTTCTGGGTATGAGCCTGTGCCTGGCGCTGATGTTCATCTGCTCCTGGTACTACGCGCTGTCCGCCATGCTCATCGCTG
GCTGCATCTACAAGTACATCGAGTACCGCGGGGCCGAGAAGGAGTGGGGCGATGGCATCCGTGGCCTATCCCTGAACGCCGCCCGCTACG
CCCTGCTGCGCGTGGAGCACGGTCCCCCCCACACCAAGAACTGGAGGCCCCAGGTGCTGGTGATGCTGAACCTGGACGCGGAGCAGGCCG
TGAAGCACCCCCGCCTGCTGTCCTTCACGTCGCAGCTGAAGGCCGGCAAGGGCCTGACCATCGTGGGCTCGGTGCTGGAGGGGACGTACC
TGGACAAGCACATGGAGGCTCAGCGGGCCGAGGAGCTTCTCTTTGATTTCCTGGCCTTTAAAAATGACATCAGTTTCTGGAAGAAGAAGA
AGAGCATGATCGGCATGTCCACCAAGCTGTGGAAAGTGAAGAAGGCATTGAAGATGACTATTTTTTGGAGAGGCCTGATGCCCGAATTTC
AGTTTGGCACTTACAGCGAATCTGAGAGGAAAACCGAGGAGTACGATACTCAGGCCATGAAGTACTTGTCATACCTGCTGTACCCTCTCT
GTGTCGGGGGTGCTGTCTATTCACTCCTGAATATCAAATATAAGAGCTGGTACTCCTGGTTAATCAACAGCTTCGTCAACGGGGTCTATG
CCTTTGGTTTCCTCTTCATGCTGCCCCAGCTCTTTGTGAACTACAAGTTGAAGTCAGTGGCACATCTGCCCTGGAAGGCCTTCACCTACA
AGGCTTTCAACACCTTCATTGATGACGTCTTTGCCTTCATCATCACCATGCCCACGTCTCACCGGCTGGCCTGCTTCCGGGACGACGTGG
TGTTTCTGGTCTACCTGTACCAGCGGTGGCTTTATCCTGTGGATAAACGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGGCCA
CGCGGGCGCCCCACACGGACTGAAGGCCGCCCGGGCTGCCGCCAGCCAAGTGCAACTTGAATTGTCAATGAGTATTTTTGGAAGCATTTG
GAGGAATTCCTAGACATTGCGTTTTCTGTGTTGCCAAAATCCCTTCGGACATTTCTCAGACATCTCCCAAGTTCCCATCACGTCAGATTT
GGAGCTGGTAGCGCTTACGATGCCCCCACGTGTGAACATCTGTCTTGGTCACAGAGCTGGGTGCTGCCGGTCACCTTGAGCTGTGGTGGC
TCCCGGCACACGAGTGTCCGGGGTTCGGCCATGTCCTCACGCGGGCAGGGGTGGGAGCCCTCACAGGCAAGGGGGCTGTTGGATTTCCAT
TTCAGGTGGTTTTCTAAGTGCTCCTTATGTGAATTTCAAACACGTATGGAATTCATTCCGCATGGACTCTGGGATCAAAGGCTCTTTCCT
CTTTTGTTTGAGAGTTGGTTGTTTTAAAGCTTAATGTATGTTTCTATTTTAAAATAAATTTTTCTGGCTGTGGCATTTTTCTTGACCTGG
TATAATGAAAGTATTTCGGATATTTGAGTTTAACCCTTTTCCAGAAAGTAATACATGATATGGATTTATTTATGCATTAAAAGAGCAAAT

>82233_82233_3_SLC12A7-CLPTM1L_SLC12A7_chr5_1073748_ENST00000264930_CLPTM1L_chr5_1331998_ENST00000507807_length(amino acids)=956AA_BP=751
MQAAMPTNFTVVPVEAHADGGGDETAERTEAPGTPEGPEPERPSPGDGNPRENSPFLNNVEVEQESFFEGKNMALFEEEMDSNPMVSSLL
NKLANYTNLSQGVVEHEEDEESRRREAKAPRMGTFIGVYLPCLQNILGVILFLRLTWIVGVAGVLESFLIVAMCCTCTMLTAISMSAIAT
NGVVPAGGSYYMISRSLGPEFGGAVGLCFYLGTTFAGAMYILGTIEIFLTYISPGAAIFQAEAAGGEAAAMLHNMRVYGTCTLVLMALVV
FVGVKYVNKLALVFLACVVLSILAIYAGVIKSAFDPPDIPVCLLGNRTLSRRSFDACVKAYGIHNNSATSALWGLFCNGSQPSAACDEYF
IQNNVTEIQGIPGAASGVFLENLWSTYAHAGAFVEKKGVPSVPVAEESRASALPYVLTDIAASFTLLVGIYFPSVTGIMAGSNRSGDLKD
AQKSIPTGTILAIVTTSFIYLSCIVLFGACIEGVVLRDKFGEALQGNLVIGMLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIARD
GIVPFLQVFGHGKANGEPTWALLLTVLICETGILIASLDSVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLC
LALMFICSWYYALSAMLIAGCIYKYIEYRGAEKEWGDGIRGLSLNAARYALLRVEHGPPHTKNWRPQVLVMLNLDAEQAVKHPRLLSFTS
QLKAGKGLTIVGSVLEGTYLDKHMEAQRAEELLFDFLAFKNDISFWKKKKSMIGMSTKLWKVKKALKMTIFWRGLMPEFQFGTYSESERK
TEEYDTQAMKYLSYLLYPLCVGGAVYSLLNIKYKSWYSWLINSFVNGVYAFGFLFMLPQLFVNYKLKSVAHLPWKAFTYKAFNTFIDDVF

--------------------------------------------------------------

Top

Fusion Gene PPI Analysis for SLC12A7-CLPTM1L


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for SLC12A7-CLPTM1L


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for SLC12A7-CLPTM1L


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource