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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SLC30A6-GNA11 (FusionGDB2 ID:82888)

Fusion Gene Summary for SLC30A6-GNA11

check button Fusion gene summary
Fusion gene informationFusion gene name: SLC30A6-GNA11
Fusion gene ID: 82888
HgeneTgene
Gene symbol

SLC30A6

GNA11

Gene ID

55676

2767

Gene namesolute carrier family 30 member 6G protein subunit alpha 11
SynonymsMST103|MSTP103|ZNT6FBH|FBH2|FHH2|GNA-11|HHC2|HYPOC2
Cytomap

2p22.3

19p13.3

Type of geneprotein-codingprotein-coding
Descriptionzinc transporter 6solute carrier family 30 (zinc transporter), member 6guanine nucleotide-binding protein subunit alpha-11g alpha-11guanine nucleotide binding protein (G protein), alpha 11 (Gq class)guanine nucleotide-binding protein G(y) subunit alpha
Modification date2020031320200313
UniProtAcc.

P29992

Ensembl transtripts involved in fusion geneENST00000282587, ENST00000379343, 
ENST00000435660, ENST00000357055, 
ENST00000406369, ENST00000538303, 
ENST00000586180, ENST00000078429, 
Fusion gene scores* DoF score11 X 11 X 5=6055 X 7 X 5=175
# samples 137
** MAII scorelog2(13/605*10)=-2.2184235191335
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(7/175*10)=-1.32192809488736
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SLC30A6 [Title/Abstract] AND GNA11 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointGNA11(3094785)-SLC30A6(32400388), # samples:2
SLC30A6(32396442)-GNA11(3110147), # samples:2
SLC30A6(32396442)-GNA11(3110146), # samples:2
Anticipated loss of major functional domain due to fusion event.SLC30A6-GNA11 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
SLC30A6-GNA11 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
SLC30A6-GNA11 seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across SLC30A6 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across GNA11 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PRADTCGA-CH-5754-01ASLC30A6chr2

32396442

+GNA11chr19

3110147

+
ChimerDB4PRADTCGA-CH-5754SLC30A6chr2

32396442

+GNA11chr19

3110146

+
ChimerDB4PRADTCGA-CH-5754SLC30A6chr2

32396442

+GNA11chr19

3110147

+


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Fusion Gene ORF analysis for SLC30A6-GNA11

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000282587ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110147

+
5CDS-intronENST00000282587ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110146

+
5CDS-intronENST00000379343ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110147

+
5CDS-intronENST00000379343ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110146

+
5CDS-intronENST00000435660ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110147

+
5CDS-intronENST00000435660ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110146

+
5UTR-3CDSENST00000357055ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110147

+
5UTR-3CDSENST00000357055ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110146

+
5UTR-intronENST00000357055ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110147

+
5UTR-intronENST00000357055ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110146

+
Frame-shiftENST00000282587ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110147

+
Frame-shiftENST00000282587ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110146

+
Frame-shiftENST00000379343ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110147

+
Frame-shiftENST00000379343ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110146

+
Frame-shiftENST00000435660ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110147

+
Frame-shiftENST00000435660ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110146

+
intron-3CDSENST00000406369ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110147

+
intron-3CDSENST00000406369ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110146

+
intron-3CDSENST00000538303ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110147

+
intron-3CDSENST00000538303ENST00000078429SLC30A6chr2

32396442

+GNA11chr19

3110146

+
intron-intronENST00000406369ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110147

+
intron-intronENST00000406369ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110146

+
intron-intronENST00000538303ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110147

+
intron-intronENST00000538303ENST00000586180SLC30A6chr2

32396442

+GNA11chr19

3110146

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for SLC30A6-GNA11


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
SLC30A6chr232396442+GNA11chr193110146+6.27E-121
SLC30A6chr232396442+GNA11chr193110146+6.27E-121
SLC30A6chr232396442+GNA11chr193110146+6.27E-121
SLC30A6chr232396442+GNA11chr193110146+6.27E-121

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for SLC30A6-GNA11


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:3094785/:32400388)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.GNA11

P29992

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. Acts as an activator of phospholipase C. Transduces FFAR4 signaling in response to long-chain fatty acids (LCFAs). {ECO:0000269|PubMed:27852822}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for SLC30A6-GNA11


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for SLC30A6-GNA11


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SLC30A6-GNA11


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SLC30A6-GNA11


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource