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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SLC34A2-ZCCHC4 (FusionGDB2 ID:82930)

Fusion Gene Summary for SLC34A2-ZCCHC4

check button Fusion gene summary
Fusion gene informationFusion gene name: SLC34A2-ZCCHC4
Fusion gene ID: 82930
HgeneTgene
Gene symbol

SLC34A2

ZCCHC4

Gene ID

10568

29063

Gene namesolute carrier family 34 member 2zinc finger CCHC-type containing 4
SynonymsNAPI-3B|NAPI-IIb|NPTIIb|PULAMHSPC052|ZGRF4
Cytomap

4p15.2

4p15.2

Type of geneprotein-codingprotein-coding
Descriptionsodium-dependent phosphate transport protein 2Bsodium/phosphate cotransporter 2Bsolute carrier family 34 (sodium phosphate), member 2solute carrier family 34 (type II sodium/phosphate cotransporter), member 2type II sodium-dependent phosphate transporrRNA N6-adenosine-methyltransferase ZCCHC4DHHC domain-containing zinc finger proteinzinc finger CCHC domain-containing protein 4zinc finger, CCHC domain containing 4zinc finger, GRF-type containing 4
Modification date2020031320200327
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000382051, ENST00000503434, 
ENST00000504570, ENST00000510033, 
ENST00000302874, ENST00000505451, 
Fusion gene scores* DoF score8 X 10 X 6=4802 X 4 X 3=24
# samples 155
** MAII scorelog2(15/480*10)=-1.67807190511264
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(5/24*10)=1.05889368905357
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: SLC34A2 [Title/Abstract] AND ZCCHC4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSLC34A2(25657512)-ZCCHC4(25363480), # samples:1
SLC34A2(25657512)-ZCCHC4(25351113), # samples:1
SLC34A2(25664234)-ZCCHC4(25363481), # samples:1
SLC34A2(25657512)-ZCCHC4(25363481), # samples:1
SLC34A2(25657512)-ZCCHC4(25351114), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneSLC34A2

GO:0006817

phosphate ion transport

10329428|10610722|12488042

HgeneSLC34A2

GO:0030643

cellular phosphate ion homeostasis

10610722

TgeneZCCHC4

GO:0031167

rRNA methylation

30531910

TgeneZCCHC4

GO:0045727

positive regulation of translation

30531910


check buttonFusion gene breakpoints across SLC34A2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across ZCCHC4 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LUADTCGA-MN-A4N4-01ASLC34A2chr4

25664234

+ZCCHC4chr4

25363481

+
ChimerDB4OVTCGA-24-1553-01ASLC34A2chr4

25657512

+ZCCHC4chr4

25351114

+
ChimerDB4OVTCGA-24-1553-01ASLC34A2chr4

25657512

+ZCCHC4chr4

25363481

+
ChimerDB4OVTCGA-24-1553SLC34A2chr4

25657512

+ZCCHC4chr4

25351113

+
ChimerDB4OVTCGA-24-1553SLC34A2chr4

25657512

+ZCCHC4chr4

25363480

+


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Fusion Gene ORF analysis for SLC34A2-ZCCHC4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000382051ENST00000302874SLC34A2chr4

25664234

+ZCCHC4chr4

25363481

+
5CDS-intronENST00000382051ENST00000505451SLC34A2chr4

25664234

+ZCCHC4chr4

25363481

+
5CDS-intronENST00000503434ENST00000302874SLC34A2chr4

25664234

+ZCCHC4chr4

25363481

+
5CDS-intronENST00000503434ENST00000505451SLC34A2chr4

25664234

+ZCCHC4chr4

25363481

+
5CDS-intronENST00000504570ENST00000302874SLC34A2chr4

25664234

+ZCCHC4chr4

25363481

+
5CDS-intronENST00000504570ENST00000505451SLC34A2chr4

25664234

+ZCCHC4chr4

25363481

+
5UTR-3UTRENST00000382051ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25351114

+
5UTR-3UTRENST00000382051ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25351113

+
5UTR-3UTRENST00000382051ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25351114

+
5UTR-3UTRENST00000382051ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25351113

+
5UTR-3UTRENST00000504570ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25351114

+
5UTR-3UTRENST00000504570ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25351113

+
5UTR-3UTRENST00000504570ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25351114

+
5UTR-3UTRENST00000504570ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25351113

+
5UTR-intronENST00000382051ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25363481

+
5UTR-intronENST00000382051ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25363480

+
5UTR-intronENST00000382051ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25363481

+
5UTR-intronENST00000382051ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25363480

+
5UTR-intronENST00000504570ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25363481

+
5UTR-intronENST00000504570ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25363480

+
5UTR-intronENST00000504570ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25363481

+
5UTR-intronENST00000504570ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25363480

+
intron-3UTRENST00000503434ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25351114

+
intron-3UTRENST00000503434ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25351113

+
intron-3UTRENST00000503434ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25351114

+
intron-3UTRENST00000503434ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25351113

+
intron-3UTRENST00000510033ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25351114

+
intron-3UTRENST00000510033ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25351113

+
intron-3UTRENST00000510033ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25351114

+
intron-3UTRENST00000510033ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25351113

+
intron-intronENST00000503434ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25363481

+
intron-intronENST00000503434ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25363480

+
intron-intronENST00000503434ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25363481

+
intron-intronENST00000503434ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25363480

+
intron-intronENST00000510033ENST00000302874SLC34A2chr4

25664234

+ZCCHC4chr4

25363481

+
intron-intronENST00000510033ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25363481

+
intron-intronENST00000510033ENST00000302874SLC34A2chr4

25657512

+ZCCHC4chr4

25363480

+
intron-intronENST00000510033ENST00000505451SLC34A2chr4

25664234

+ZCCHC4chr4

25363481

+
intron-intronENST00000510033ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25363481

+
intron-intronENST00000510033ENST00000505451SLC34A2chr4

25657512

+ZCCHC4chr4

25363480

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for SLC34A2-ZCCHC4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
SLC34A2chr425664234+ZCCHC4chr425363480+0.73236940.26763058
SLC34A2chr425657512+ZCCHC4chr425363480+0.0003290930.99967086
SLC34A2chr425657512+ZCCHC4chr425363480+0.0003290930.99967086
SLC34A2chr425657512+ZCCHC4chr425351113+1.82E-050.9999819
SLC34A2chr425657512+ZCCHC4chr425351113+1.82E-050.9999819
SLC34A2chr425664234+ZCCHC4chr425363480+0.73236940.26763058
SLC34A2chr425657512+ZCCHC4chr425363480+0.0003290930.99967086
SLC34A2chr425657512+ZCCHC4chr425363480+0.0003290930.99967086
SLC34A2chr425657512+ZCCHC4chr425351113+1.82E-050.9999819
SLC34A2chr425657512+ZCCHC4chr425351113+1.82E-050.9999819

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for SLC34A2-ZCCHC4


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:25657512/:25363480)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for SLC34A2-ZCCHC4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for SLC34A2-ZCCHC4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SLC34A2-ZCCHC4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SLC34A2-ZCCHC4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource