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	Fusion Gene Summary
	Fusion Gene ORF analysis
	Fusion Genomic Features
	Fusion Protein Features
	Fusion Gene Sequence
	Fusion Gene PPI analysis
	Related Drugs
	Related Diseases

Fusion gene:SLC38A9-SNX13 (FusionGDB2 ID:83124)

Fusion Gene Summary for SLC38A9-SNX13

Fusion gene summary

Fusion gene information	Fusion gene name: SLC38A9-SNX13
	Fusion gene ID: 83124
		Hgene	Tgene
	Gene symbol	SLC38A9	SNX13
	Gene ID	153129	23161
	Gene name	solute carrier family 38 member 9	sorting nexin 13
	Synonyms	URLC11	RGS-PX1
	Cytomap	5q11.2	7p21.1
	Type of gene	protein-coding	protein-coding
	Description	sodium-coupled neutral amino acid transporter 9putative sodium-coupled neutral amino acid transporter 9up-regulated in lung cancer 11	sorting nexin-13rgs domain- and phox domain-containing protein
	Modification date	20200313	20200313
	UniProtAcc	.	.
	Ensembl transtripts involved in fusion gene	ENST00000318672, ENST00000396865, ENST00000539768, ENST00000416547, ENST00000504880, ENST00000512595, ENST00000515629,	ENST00000496855, ENST00000409604, ENST00000409389, ENST00000428135,
Fusion gene scores	* DoF score	2 X 2 X 2=8	5 X 5 X 4=100
	# samples	2	6
	** MAII score	log2(2/8*10)=1.32192809488736	log2(6/100*10)=-0.736965594166206 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Context	PubMed: SLC38A9 [Title/Abstract] AND SNX13 [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint	SLC38A9(54993674)-SNX13(17838777), # samples:1
Anticipated loss of major functional domain due to fusion event.	SLC38A9-SNX13 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. SLC38A9-SNX13 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Hgene	SLC38A9	GO:0003333	amino acid transmembrane transport	25567906\|29053970
Hgene	SLC38A9	GO:0032008	positive regulation of TOR signaling	25561175\|25567906
Hgene	SLC38A9	GO:0071230	cellular response to amino acid stimulus	25561175\|25567906\|29053970
Tgene	SNX13	GO:0043547	positive regulation of GTPase activity	11729322

Fusion gene breakpoints across SLC38A9 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across SNX13 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChimerDB4	STAD	TCGA-BR-8284-01A	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-

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Fusion Gene ORF analysis for SLC38A9-SNX13

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
5CDS-5UTR	ENST00000318672	ENST00000496855	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5CDS-5UTR	ENST00000396865	ENST00000496855	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5CDS-5UTR	ENST00000539768	ENST00000496855	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5CDS-intron	ENST00000318672	ENST00000409604	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5CDS-intron	ENST00000396865	ENST00000409604	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5CDS-intron	ENST00000539768	ENST00000409604	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5UTR-3CDS	ENST00000416547	ENST00000409389	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5UTR-3CDS	ENST00000416547	ENST00000428135	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5UTR-3CDS	ENST00000504880	ENST00000409389	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5UTR-3CDS	ENST00000504880	ENST00000428135	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5UTR-5UTR	ENST00000416547	ENST00000496855	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5UTR-5UTR	ENST00000504880	ENST00000496855	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5UTR-intron	ENST00000416547	ENST00000409604	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
5UTR-intron	ENST00000504880	ENST00000409604	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
Frame-shift	ENST00000396865	ENST00000409389	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
Frame-shift	ENST00000396865	ENST00000428135	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
In-frame	ENST00000318672	ENST00000409389	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
In-frame	ENST00000318672	ENST00000428135	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
In-frame	ENST00000539768	ENST00000409389	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
In-frame	ENST00000539768	ENST00000428135	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
intron-3CDS	ENST00000512595	ENST00000409389	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
intron-3CDS	ENST00000512595	ENST00000428135	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
intron-3CDS	ENST00000515629	ENST00000409389	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
intron-3CDS	ENST00000515629	ENST00000428135	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
intron-5UTR	ENST00000512595	ENST00000496855	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
intron-5UTR	ENST00000515629	ENST00000496855	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
intron-intron	ENST00000512595	ENST00000409604	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-
intron-intron	ENST00000515629	ENST00000409604	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-

ORFfinder result based on the fusion transcript sequence of in-frame fusion genes.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	Seq length (transcript)	BP loci (transcript)	Predicted start (transcript)	Predicted stop (transcript)	Seq length (amino acids)
ENST00000539768	SLC38A9	chr5	54993674	-	ENST00000428135	SNX13	chr7	17838777	-	3973	113	140	688	182
ENST00000539768	SLC38A9	chr5	54993674	-	ENST00000409389	SNX13	chr7	17838777	-	4425	113	2868	3221	117
ENST00000318672	SLC38A9	chr5	54993674	-	ENST00000428135	SNX13	chr7	17838777	-	4009	149	176	724	182
ENST00000318672	SLC38A9	chr5	54993674	-	ENST00000409389	SNX13	chr7	17838777	-	4461	149	2904	3257	117

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	No-coding score	Coding score
ENST00000539768	ENST00000428135	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-	0.001593962	0.9984061
ENST00000539768	ENST00000409389	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-	0.08042258	0.9195774
ENST00000318672	ENST00000428135	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-	0.001639753	0.9983602
ENST00000318672	ENST00000409389	SLC38A9	chr5	54993674	-	SNX13	chr7	17838777	-	0.08203083	0.91796917

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Fusion Genomic Features for SLC38A9-SNX13

FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

1-p

p (fusion gene breakpoint)

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for SLC38A9-SNX13

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr5:54993674/chr7:17838777)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
.	.
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.	FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page

* Minus value of BPloci means that the break pointn is located before the CDS.

- In-frame and retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

- In-frame and not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

129_134

562.0

Region

Important for arginine binding and amino acid transport

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

129_134

562.0

Region

Important for arginine binding and amino acid transport

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

129_134

499.0

Region

Important for arginine binding and amino acid transport

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

129_134

499.0

Region

Important for arginine binding and amino acid transport

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

129_134

1295.3333333333333

Region

Important for arginine binding and amino acid transport

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

141_146

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

168_198

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

1_119

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

226_283

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

301_309

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

335_356

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

378_394

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

416_437

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

459_479

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

501_507

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

529_540

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

141_146

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

168_198

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

1_119

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

226_283

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

301_309

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

335_356

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

378_394

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

416_437

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

459_479

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

501_507

562.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

529_540

562.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

141_146

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

168_198

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

1_119

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

226_283

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

301_309

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

335_356

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

378_394

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

416_437

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

459_479

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

501_507

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

529_540

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

141_146

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

168_198

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

1_119

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

226_283

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

301_309

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

335_356

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

378_394

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

416_437

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

459_479

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

501_507

499.0

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

529_540

499.0

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

141_146

1295.3333333333333

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

168_198

1295.3333333333333

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

1_119

1295.3333333333333

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

226_283

1295.3333333333333

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

301_309

1295.3333333333333

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

335_356

1295.3333333333333

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

378_394

1295.3333333333333

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

416_437

1295.3333333333333

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

459_479

1295.3333333333333

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

501_507

1295.3333333333333

Topological domain

Lumenal

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

529_540

1295.3333333333333

Topological domain

Cytoplasmic

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

120_140

562.0

Transmembrane

Helical%3B Name%3D1

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

147_167

562.0

Transmembrane

Helical%3B Name%3D2

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

199_225

562.0

Transmembrane

Helical%3B Name%3D3

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

284_300

562.0

Transmembrane

Helical%3B Name%3D4

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

310_334

562.0

Transmembrane

Helical%3B Name%3D5

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

357_377

562.0

Transmembrane

Helical%3B Name%3D6

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

395_415

562.0

Transmembrane

Helical%3B Name%3D7

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

438_458

562.0

Transmembrane

Helical%3B Name%3D8

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

480_500

562.0

Transmembrane

Helical%3B Name%3D9

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

508_528

562.0

Transmembrane

Helical%3B Name%3D10

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000318672

541_561

562.0

Transmembrane

Helical%3B Name%3D11

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

120_140

562.0

Transmembrane

Helical%3B Name%3D1

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

147_167

562.0

Transmembrane

Helical%3B Name%3D2

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

199_225

562.0

Transmembrane

Helical%3B Name%3D3

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

284_300

562.0

Transmembrane

Helical%3B Name%3D4

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

310_334

562.0

Transmembrane

Helical%3B Name%3D5

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

357_377

562.0

Transmembrane

Helical%3B Name%3D6

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

395_415

562.0

Transmembrane

Helical%3B Name%3D7

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

438_458

562.0

Transmembrane

Helical%3B Name%3D8

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

480_500

562.0

Transmembrane

Helical%3B Name%3D9

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

508_528

562.0

Transmembrane

Helical%3B Name%3D10

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000396865

541_561

562.0

Transmembrane

Helical%3B Name%3D11

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

120_140

499.0

Transmembrane

Helical%3B Name%3D1

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

147_167

499.0

Transmembrane

Helical%3B Name%3D2

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

199_225

499.0

Transmembrane

Helical%3B Name%3D3

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

284_300

499.0

Transmembrane

Helical%3B Name%3D4

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

310_334

499.0

Transmembrane

Helical%3B Name%3D5

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

357_377

499.0

Transmembrane

Helical%3B Name%3D6

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

395_415

499.0

Transmembrane

Helical%3B Name%3D7

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

438_458

499.0

Transmembrane

Helical%3B Name%3D8

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

480_500

499.0

Transmembrane

Helical%3B Name%3D9

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

508_528

499.0

Transmembrane

Helical%3B Name%3D10

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000512595

541_561

499.0

Transmembrane

Helical%3B Name%3D11

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

120_140

499.0

Transmembrane

Helical%3B Name%3D1

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

147_167

499.0

Transmembrane

Helical%3B Name%3D2

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

199_225

499.0

Transmembrane

Helical%3B Name%3D3

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

284_300

499.0

Transmembrane

Helical%3B Name%3D4

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

310_334

499.0

Transmembrane

Helical%3B Name%3D5

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

357_377

499.0

Transmembrane

Helical%3B Name%3D6

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

395_415

499.0

Transmembrane

Helical%3B Name%3D7

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

438_458

499.0

Transmembrane

Helical%3B Name%3D8

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

480_500

499.0

Transmembrane

Helical%3B Name%3D9

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

508_528

499.0

Transmembrane

Helical%3B Name%3D10

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000515629

541_561

499.0

Transmembrane

Helical%3B Name%3D11

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

120_140

1295.3333333333333

Transmembrane

Helical%3B Name%3D1

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

147_167

1295.3333333333333

Transmembrane

Helical%3B Name%3D2

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

199_225

1295.3333333333333

Transmembrane

Helical%3B Name%3D3

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

284_300

1295.3333333333333

Transmembrane

Helical%3B Name%3D4

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

310_334

1295.3333333333333

Transmembrane

Helical%3B Name%3D5

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

357_377

1295.3333333333333

Transmembrane

Helical%3B Name%3D6

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

395_415

1295.3333333333333

Transmembrane

Helical%3B Name%3D7

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

438_458

1295.3333333333333

Transmembrane

Helical%3B Name%3D8

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

480_500

1295.3333333333333

Transmembrane

Helical%3B Name%3D9

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

508_528

1295.3333333333333

Transmembrane

Helical%3B Name%3D10

Hgene

SLC38A9

chr5:54993674

chr7:17838777

ENST00000539768

541_561

1295.3333333333333

Transmembrane

Helical%3B Name%3D11

Tgene

SNX13

chr5:54993674

chr7:17838777

ENST00000428135

373_496

766

958.0

Domain

RGS

Tgene

SNX13

chr5:54993674

chr7:17838777

ENST00000428135

570_691

766

958.0

Domain

Tgene

SNX13

chr5:54993674

chr7:17838777

ENST00000428135

97_284

766

958.0

Domain

PXA

Top

Fusion Gene Sequence for SLC38A9-SNX13

For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

>83124_83124_1_SLC38A9-SNX13_SLC38A9_chr5_54993674_ENST00000318672_SNX13_chr7_17838777_ENST00000409389_length(transcript)=4461nt_BP=149nt
AGGACTAACTTCTTCAGTGCTTAGAGTGTGAGAAAAATGGCAAATATGAATAGTGATTCTAGGCATCTTGGCACCTCTGAGGTAGATCAT
GAAAGAGATCCTGGACCTATGAATATCCAGTTTGAGCCATCGGATCTAAGATCCAAAAGGTGGATGACAATATTCCACTTAGGGTAATGC
TGCTTCTCATGGATGAAGTATTCGACTTAAAAGAAAGAAATCAGTGGTTGCGAAGGAATATCAAAAACCTACTTCAACAGCTTATTAGAG
CTACATATGGCGATACTATTAATAGAAAAATAGTTGACCATGTTGACTGGATGACTTCACCTGAACAAGTAGCCGACTCAGTGAAACGTT
TCAGAGATGCATTTTGGCCAAATGGCATTTTAGCAGAGGCTGTTCCATGCAGAGATAAAAGTATTCGAATGAGAACAAGAGTAGCAGGAA
AAACGAAATTACTTGCAATTATGCCAGGTGAGTGAGCATGTATAGTTAAAAATCTTTATAATTTGTCATTCTTCTGAGTTTTTAGCATTC
ATCATGCCAGTGTAACTGCCTTTTGATTATAACAACTACCTTTTGATGGCTTAATACATATCAGGCACTGTACTAGGCATTTCTCATATG
TTCTTAATCAGTCCTCATGACAGTACTGTAAAGCTAAGGACTGTTAACATCACCGCTTTATATGTGAGGAAACGGAAGCTCAGAGAGGTT
AAATAACCTATCCAAGGTTTATAGCTACTAAGCAACAGTTGGTATTCTGACTTGGCTTTAAGTGATGTGAAAGCTTATGCTTTTAGCCAC
TTCGCTCTGCTGCCTTGAAACATATTGGGAGTTAAGTTAAATAAATAAAATACATGACAGGTGAAAGGGCTAATAAAATATAAAGTATGA
ATTTTTCAGGAAGAATATTTGTTGTACTTAGGAAAACAAGTTATTTCAAAAACTCCATTTACATAGAAAGAACTGATTGGCTGATTATTA
ATCTTTATTACTTAAAATACAATCCCAAACAAAGTATACTTAGTAGCATTTTGTTGGTCTGATTTTGGTTGCTTCATTAGGGTATAGCTA
TCTCACTACCTTAGATTTACTTTTTCTCGTTTTTCTTCTTTCAATCAGAGAAGTTATATAATGTAAAAAGCAATTTAATGCGGCTGGGAG
GTGGTGATGGTTGTTTTGCCCCTTGTTAATGAGTATCTTTGAAAATGCCTGCATGTCTTTTCTCTGTATTTTAATTCTGGATGTAGAGAA
TGAACAGACATATTTGTACATTCTTTAATATCACACAATACCAATTTTTTTCTCTAATTTTGTTTTCTTACCTGTATTTTCTCTATAAAT
TTTAATGACCAGCCTTCTCTTCTGTCAATTAAATTAAAAATTTGCCACAATTTTAATTCTTACCTATATACCGTTTCATTTGCTGATAAA
AAAGCAAATTATAGAAATGACATTTTAGAAAAATAAGAAACAATTGCTTAGGATATTATTTAATATACTATTATAGTAAACCTGATTGTG
CTATATGGACTGACTCAGTTATCTAGCTGGAAGAAATCTTTATTCACTAAATATTTATTGAAAGTTATTATGTGCCAGGTGCTGTTCTTT
GCACTTATGTTTGCCTTCTTGGAGCTTACTTTCCAGTAGAAATAGAGAGACTCAAAAACACACAGAACAAATAAATGGAACGTAGTTTGT
TAGATAAGTGGTAAGTACTAAAGAGAAAGATACTGCAGGAAAATGGAATAGATAGTGTCAGATGAGTTGCAGTTTTAGATGGGGTGGCCA
GGCAGGCCTCACTGAGATGATGATGGTGGTGTGAAGATCTGAAGGAAGTGAGGGTAAATATGAAAGCATATAAATTTATATATACATAAT
CCTTGCCTATTTTTTAGTAAATTCTCAAAATTTTTGCTTTAAATTATATCTTACCCCTAGTTAGATAAAGACTTTTTGGAAATTGCATGT
TTCTTTCCAAAGCAGCAAAATAATATCTATATTATCAGTATTATGAATAATTATTTGTAATTATGAATAAGAATATGAATAATTAATAAT
CATACATGTTGGTCTCATAACTTGGTGTTATTTATGATTAAACACCAAATTTGCTCACTCTTAGTCACAGCACCATCGGTTTTCTATTTT
CTTTGCTTTCTTCACTTTGAATTTAAATAAAATTCAACCCAACTTGTACTATCCCTATTTCTTGAGCATGCTTTGTTATTCTAGTTACTG
CTTATTTGCTCATTCATGTTCTTTTCACCAAGGCTAATCCTTCATCTCATTGCACCTATCAAAATCCTGCCCAAGTAGAAAGTCTCCTTT
ACCTGCCACTTCCTTAAAGGGAACTTTTCTTTGTTATCGCATCTGAAAGTCTCCCCACTACCAATATTCTTATACTTTTAGCATTTTTAT
GGTATAGTTACTATGCCAGGGGTTTTTGTAGATCAGGGATTAATTTTTTTTTTTCCTGTGTTCCAATGAAACTTTATTCACCATCATGGA
TTAGTTTGTTTCCTTACAGCATTTGTCACTATTCATTAGGCCTACTAAGAATATTTGTATAATATTACAAAGTTTACAGATCACTTTTTA
CATTATTTCATTAAAGACTTATAAATCCTTATAAGGATGTTATTATAAATCCTCCTTTTCAGATGAGAAAAGAGAGTCAGGGTGGTGGGT
AAGTATCACATGGGTATTAAGGGACATGTTTGTAATCATAGTTTGGGATCTTTGAGACTGTTTTTTATTTTTTATCTCTTACACCTGTGC
TATATTGTCTCCCAGTAGCTTTTGCATTAAGTGCGTAAATAGATGCATGCATGCAAAGATGCATATTAAGTTTCAGCTATAGTACATAGC
TGAAATGCATTAACTGGTTACCTACTGTTCATCAGTTACTCTGCTGTGTACCTTAATTTAAGAACATTTAAGAGTTTAGGCCTTGTGTTT
CCTTTGAATAATTATGTGTGTTTTCCTCCACTTCATTTAGATGAGCTGAAGCACATTATTGGGGCTGAGACAACACGGAAAGGTATTCTT
CGTGTTTTTGAAATGTTTCAGCACAACCAATTAAATAGGAGAATGGTTTATGTCTTCTTGGAAGGCTTTTTAGAAACCTTATTTCCACAG
TATAAATTCCGTGAACTTTTCAACAAACTGCATTCACGGTCAAAGCAGATGCAGAAATATAAACAGAAACTTCAAACTACTCAAGCGCCT
TCTTTGCAGAAAAGGTGACACTCCACTCTATGAAGCTGGTGTTCATTTTGTCCAGGACTAATGGTATGGACAGATCTTCTGGGGCTTAAC
TCAAATACTGTTGTGTCTGCACCAGTCTTTTAGTGTCTCAAAATAGATTATTAATACATCCATAAGTCTGTGGTTCTTCTCATTCTCATC
TATAATCCACCACTACCAAGAGAGATTTCTGTGTCTTAAATGATTTGGTGCATATTTTGCAACATTGAGAGAAAACTGCCCCCATCTCAA
GCAAGAATGGCGTTGGTTTCTTCCATTTCAAACTAATCAGCATTCTCCAGCAATGACAAAGTGCCAGAGTGTATATATGAAAGCTAAGGA
AAGCACAAAACAATGGTTCAGAGATAAATTGGCTAATTTGTTTAACAGTTGGAGACTGTGCAATGTACGACTTGGAGGAGTTTGTTTGGC
ATAATGATTTTGTAGGTCTGTCAGCATTTTGATATATTGTGGATTAGCCAGGTGAATGATCCTTGAAACATCTCTTTCAGGTCTGGAGAA
AGAGACAGAATGCCCTTAAAGTGTGAAATAACCTTATACCTGAATTACAGTTTTGTGATATAAAATAAAGCTGAGTATAAAATAAAACCA
ATCAAACACAGAATTTGATTGGATTTGTTATTCATTGGTATACAACAATTTTTATTCTTATGTGTGCTTTAAGGGCTGTGTTTTGCTCTT
AGGGTACTCAATTTTATGTTTCCTTTTGGCATTCTTTGTGCAAAAAGAAGCATGTGGTGGCTCTCATTTAAATTTCAAAATTATTAGTTT
TATCTTTAACAGATTACTGATTATACAGAAGATATAATTTATTGGAAGAACTGCCAAATACATTTTGTCCTTCTAAAAATATGGAAATTT
AAATAGTAGTCTGGAAAGTTACCATATGATAATTTTTAATTGTGTGATCTAGACATGCCTTAGGTAACTGCAGAAATAGCAAATTAAATG
ATTAATGAGCTTATTAGTCATAGTAAACATACAGATTCCTAATTCTATGACAGTGTACATATATGAAAATAAATGATGAAAAAAGAACTA
TAATATTTTTAAAAATATGCTTTTATTTATATTTCACATAATGTAAAGTTCTACAAAATAAAGCTAGTAGGCAAGACCCCTCAGTGTATA

>83124_83124_1_SLC38A9-SNX13_SLC38A9_chr5_54993674_ENST00000318672_SNX13_chr7_17838777_ENST00000409389_length(amino acids)=117AA_BP=
MFISYSAVYLNLRTFKSLGLVFPLNNYVCFPPLHLDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVYVFLEGFLETLFPQYKFRELFN

--------------------------------------------------------------
>83124_83124_2_SLC38A9-SNX13_SLC38A9_chr5_54993674_ENST00000318672_SNX13_chr7_17838777_ENST00000428135_length(transcript)=4009nt_BP=149nt
AGGACTAACTTCTTCAGTGCTTAGAGTGTGAGAAAAATGGCAAATATGAATAGTGATTCTAGGCATCTTGGCACCTCTGAGGTAGATCAT
GAAAGAGATCCTGGACCTATGAATATCCAGTTTGAGCCATCGGATCTAAGATCCAAAAGGTGGATGACAATATTCCACTTAGGGTAATGC
TGCTTCTCATGGATGAAGTATTCGACTTAAAAGAAAGAAATCAGTGGTTGCGAAGGAATATCAAAAACCTACTTCAACAGCTTATTAGAG
CTACATATGGCGATACTATTAATAGAAAAATAGTTGACCATGTTGACTGGATGACTTCACCTGAACAAGTAGCCGACTCAGTGAAACGTT
TCAGAGATGCATTTTGGCCAAATGGCATTTTAGCAGAGGCTGTTCCATGCAGAGATAAAAGTATTCGAATGAGAACAAGAGTAGCAGGAA
AAACGAAATTACTTGCAATTATGCCAGATGAGCTGAAGCACATTATTGGGGCTGAGACAACACGGAAAGGTATTCTTCGTGTTTTTGAAA
TGTTTCAGCACAACCAATTAAATAGGAGAATGGTTTATGTCTTCTTGGAAGGCTTTTTAGAAACCTTATTTCCACAGTATAAATTCCGTG
AACTTTTCAACAAACTGCATTCACGGTCAAAGCAGATGCAGAAATATAAACAGAAACTTCAAACTACTCAAGCGCCTTCTTTGCAGAAAA
GGTGACACTCCACTCTATGAAGCTGGTGTTCATTTTGTCCAGGACTAATGGTATGGACAGATCTTCTGGGGCTTAACTCAAATACTGTTG
TGTCTGCACCAGTCTTTTAGTGTCTCAAAATAGATTATTAATACATCCATAAGTCTGTGGTTCTTCTCATTCTCATCTATAATCCACCAC
TACCAAGAGAGATTTCTGTGTCTTAAATGATTTGGTGCATATTTTGCAACATTGAGAGAAAACTGCCCCCATCTCAAGCAAGAATGGCGT
TGGTTTCTTCCATTTCAAACTAATCAGCATTCTCCAGCAATGACAAAGTGCCAGAGTGTATATATGAAAGCTAAGGAAAGCACAAAACAA
TGGTTCAGAGATAAATTGGCTAATTTGTTTAACAGTTGGAGACTGTGCAATGTACGACTTGGAGGAGTTTGTTTGGCATAATGATTTTGT
AGGTCTGTCAGCATTTTGATATATTGTGGATTAGCCAGGTGAATGATCCTTGAAACATCTCTTTCAGGTCTGGAGAAAGAGACAGAATGC
CCTTAAAGTGTGAAATAACCTTATACCTGAATTACAGTTTTGTGATATAAAATAAAGCTGAGTATAAAATAAAACCAATCAAACACAGAA
TTTGATTGGATTTGTTATTCATTGGTATACAACAATTTTTATTCTTATGTGTGCTTTAAGGGCTGTGTTTTGCTCTTAGGGTACTCAATT
TTATGTTTCCTTTTGGCATTCTTTGTGCAAAAAGAAGCATGTGGTGGCTCTCATTTAAATTTCAAAATTATTAGTTTTATCTTTAACAGA
TTACTGATTATACAGAAGATATAATTTATTGGAAGAACTGCCAAATACATTTTGTCCTTCTAAAAATATGGAAATTTAAATAGTAGTCTG
GAAAGTTACCATATGATAATTTTTAATTGTGTGATCTAGACATGCCTTAGGTAACTGCAGAAATAGCAAATTAAATGATTAATGAGCTTA
TTAGTCATAGTAAACATACAGATTCCTAATTCTATGACAGTGTACATATATGAAAATAAATGATGAAAAAAGAACTATAATATTTTTAAA
AATATGCTTTTATTTATATTTCACATAATGTAAAGTTCTACAAAATAAAGCTAGTAGGCAAGACCCCTCAGTGTATACCTTTAAACCCAT
AAATTAATTTTATATCAATAAAATAAAATACTTTCTCTAGTTTTGGAGCTTCTGTATTTCCTATAGTTTTCTGACTGTCCATTTTATCCA
TCTTAGAAGTATTCACATCCCTTCTATGCAGGATTTCTGCATAGTTTTAAATACTTTCATTGCCTAAGGGTTTGGGTGTGTCAGCTTTTT
TTGTTTTAAAAATATTTAACACTAAAACCTTAAAATAATGAAGCTACTTATCAGACCACTGAGCCAAGATCCTGGTATTAAAAGAAAGTC
TGGGTGCTTAAGATAAAGGGACAGAGTATTGGTATCCCAGTTATTTGGGAGCTTTAAGATTGGAACAAGATATCACTGTCTTGTTTTCAC
TTAGATCCTACTTACAAAGTGAGGGTTATTAACAGAATAAAGCCTTCCTTTAAAGCTTTATAATAATCATATTTATTAATAATGCTGTTG
TGCATACTTATAGTATGCATATATTCAGCATATGTTGCATGTCTTCAGAATTACATAAAATGAAATCCCTTTCATTGCAACTTGCAAGTG
AGAAAAGATCCTTAGTGGCTCTGGTGGAAGAAATAGTATTTCTTCTTCTCAGGGTGTCTCCCTGCCTTGGCCCCTCCCTGAGCCCCAGGC
TTTAAAAGTGAAAATGTTTGAAACATGAAACATGTCTGTAGGAAGCATCAGCATGGCCATAAGTGCAGTGATTTTCATATATGCCTCTGC
CCATTTCAAATATATTTTTGACATGAATAAATCTAACAGTATACAGAATAATTCATGTAAGACCCTAACGTGTACATGTGAAAAAGCATT
TCTATATAATGTGAGGAGCACTGGCCATCAATTAGGGAAATAAAGGTCATGTAATATTGCAAATTTTCAAAATAGAGCCCTGCAAGATAA
CTGCAATCATACCAAAAACTATTTGAGTAAATGGATTTTTAAAGTAATTTTTGTTTAGAAGAGTTTATATTTCAGAAGCAGAAAATGTCA
AATGATAGTCTTTGTAAATGGTGGTGCACCTTCTCTATGCACATCTGTCTTTTACATCAGAAAGAGCTGTGGTCATGCTAAAATTAGAGA
TAACTTTTTGAATGACTTGGTCAAGCTGTGTGTAAAATATTTAACCATAAGTCAAGTACAGTGTACTATGTTTAATAAAGTTACATTTAA
TGCATTTATTGCATATATGAATATATACATGAAGAGGCTTTATGTCTTCTGGTATTTGATTTTGAATGTTTTTTAAGTCAGTGGTGCCTT
TAGGCAAGAACTTTCGAAATTAATCATTCTTTGTGTTTTCTGATTTTTCAGGTAACATGTACACTATTTAGAAACCATCATAGTTTATTC
ACCTTAAAAAATTGATTGTATTATTTAAATATATCACTTAGATGGGCATTTCCTATAATTAGGATATTCCAAATAGTTGCTGAAATCAAT
TGTGCCATTGACCAATGGATGCACTTGGTTAGCCTTAATTTTTTTAAAAAAAAAAAAAACAAAAACTTTCTTGAATATTTCAGTTTGTTC
ATTTTAAGTTTGTGCTGCTGGTATTTGGGAAGAAAAATCAATCAGTTAAGTGCTACCAGAAAGTGTACCAATTTTTATAAAAATTAAGAA
TGATATAAATTTCACAATCTAAAATTTTAATTTTGTGCAATATTTTCATTTAATGCATGTGTATTTGAGTAATTGTAAGATAAATGAATT
TTTAATTTTTTGAGATGTAGCTTAAACTGTCTTCTTAATCCAACAACTTACATTCCGTTGTTGCTGCATCCTTTTATTTAAGGACTTGTT
TTAAAAGTCTTTTTGTCACTCCTTGGAAAATTCTTTTATTAGTAGTAAATTTTGCTTTTAGGAGCATGGCTCCTGTATTACAAGGGAAAA
AATATGAAGAGCACATTTTAGGATTATAATTGTTAAAAGATAATGTGTGCATATCATTGTACAGTAAGTGTCAACTGTGTGCCTAACTGT
TCTATCAATACTTTCTTTCTTTAACAAAGAAGAAACAACAATCAGAATGTCAGTTATTTTTATTCAACTAAAAGGATTAAAAAATTTATT

>83124_83124_2_SLC38A9-SNX13_SLC38A9_chr5_54993674_ENST00000318672_SNX13_chr7_17838777_ENST00000428135_length(amino acids)=182AA_BP=
MLLLMDEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDAFWPNGILAEAVPCRDKSIRMRTRVA
GKTKLLAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVYVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQ

--------------------------------------------------------------
>83124_83124_3_SLC38A9-SNX13_SLC38A9_chr5_54993674_ENST00000539768_SNX13_chr7_17838777_ENST00000409389_length(transcript)=4425nt_BP=113nt
ATGGCAAATATGAATAGTGATTCTAGGCATCTTGGCACCTCTGAGGTAGATCATGAAAGAGATCCTGGACCTATGAATATCCAGTTTGAG
CCATCGGATCTAAGATCCAAAAGGTGGATGACAATATTCCACTTAGGGTAATGCTGCTTCTCATGGATGAAGTATTCGACTTAAAAGAAA
GAAATCAGTGGTTGCGAAGGAATATCAAAAACCTACTTCAACAGCTTATTAGAGCTACATATGGCGATACTATTAATAGAAAAATAGTTG
ACCATGTTGACTGGATGACTTCACCTGAACAAGTAGCCGACTCAGTGAAACGTTTCAGAGATGCATTTTGGCCAAATGGCATTTTAGCAG
AGGCTGTTCCATGCAGAGATAAAAGTATTCGAATGAGAACAAGAGTAGCAGGAAAAACGAAATTACTTGCAATTATGCCAGGTGAGTGAG
CATGTATAGTTAAAAATCTTTATAATTTGTCATTCTTCTGAGTTTTTAGCATTCATCATGCCAGTGTAACTGCCTTTTGATTATAACAAC
TACCTTTTGATGGCTTAATACATATCAGGCACTGTACTAGGCATTTCTCATATGTTCTTAATCAGTCCTCATGACAGTACTGTAAAGCTA
AGGACTGTTAACATCACCGCTTTATATGTGAGGAAACGGAAGCTCAGAGAGGTTAAATAACCTATCCAAGGTTTATAGCTACTAAGCAAC
AGTTGGTATTCTGACTTGGCTTTAAGTGATGTGAAAGCTTATGCTTTTAGCCACTTCGCTCTGCTGCCTTGAAACATATTGGGAGTTAAG
TTAAATAAATAAAATACATGACAGGTGAAAGGGCTAATAAAATATAAAGTATGAATTTTTCAGGAAGAATATTTGTTGTACTTAGGAAAA
CAAGTTATTTCAAAAACTCCATTTACATAGAAAGAACTGATTGGCTGATTATTAATCTTTATTACTTAAAATACAATCCCAAACAAAGTA
TACTTAGTAGCATTTTGTTGGTCTGATTTTGGTTGCTTCATTAGGGTATAGCTATCTCACTACCTTAGATTTACTTTTTCTCGTTTTTCT
TCTTTCAATCAGAGAAGTTATATAATGTAAAAAGCAATTTAATGCGGCTGGGAGGTGGTGATGGTTGTTTTGCCCCTTGTTAATGAGTAT
CTTTGAAAATGCCTGCATGTCTTTTCTCTGTATTTTAATTCTGGATGTAGAGAATGAACAGACATATTTGTACATTCTTTAATATCACAC
AATACCAATTTTTTTCTCTAATTTTGTTTTCTTACCTGTATTTTCTCTATAAATTTTAATGACCAGCCTTCTCTTCTGTCAATTAAATTA
AAAATTTGCCACAATTTTAATTCTTACCTATATACCGTTTCATTTGCTGATAAAAAAGCAAATTATAGAAATGACATTTTAGAAAAATAA
GAAACAATTGCTTAGGATATTATTTAATATACTATTATAGTAAACCTGATTGTGCTATATGGACTGACTCAGTTATCTAGCTGGAAGAAA
TCTTTATTCACTAAATATTTATTGAAAGTTATTATGTGCCAGGTGCTGTTCTTTGCACTTATGTTTGCCTTCTTGGAGCTTACTTTCCAG
TAGAAATAGAGAGACTCAAAAACACACAGAACAAATAAATGGAACGTAGTTTGTTAGATAAGTGGTAAGTACTAAAGAGAAAGATACTGC
AGGAAAATGGAATAGATAGTGTCAGATGAGTTGCAGTTTTAGATGGGGTGGCCAGGCAGGCCTCACTGAGATGATGATGGTGGTGTGAAG
ATCTGAAGGAAGTGAGGGTAAATATGAAAGCATATAAATTTATATATACATAATCCTTGCCTATTTTTTAGTAAATTCTCAAAATTTTTG
CTTTAAATTATATCTTACCCCTAGTTAGATAAAGACTTTTTGGAAATTGCATGTTTCTTTCCAAAGCAGCAAAATAATATCTATATTATC
AGTATTATGAATAATTATTTGTAATTATGAATAAGAATATGAATAATTAATAATCATACATGTTGGTCTCATAACTTGGTGTTATTTATG
ATTAAACACCAAATTTGCTCACTCTTAGTCACAGCACCATCGGTTTTCTATTTTCTTTGCTTTCTTCACTTTGAATTTAAATAAAATTCA
ACCCAACTTGTACTATCCCTATTTCTTGAGCATGCTTTGTTATTCTAGTTACTGCTTATTTGCTCATTCATGTTCTTTTCACCAAGGCTA
ATCCTTCATCTCATTGCACCTATCAAAATCCTGCCCAAGTAGAAAGTCTCCTTTACCTGCCACTTCCTTAAAGGGAACTTTTCTTTGTTA
TCGCATCTGAAAGTCTCCCCACTACCAATATTCTTATACTTTTAGCATTTTTATGGTATAGTTACTATGCCAGGGGTTTTTGTAGATCAG
GGATTAATTTTTTTTTTTCCTGTGTTCCAATGAAACTTTATTCACCATCATGGATTAGTTTGTTTCCTTACAGCATTTGTCACTATTCAT
TAGGCCTACTAAGAATATTTGTATAATATTACAAAGTTTACAGATCACTTTTTACATTATTTCATTAAAGACTTATAAATCCTTATAAGG
ATGTTATTATAAATCCTCCTTTTCAGATGAGAAAAGAGAGTCAGGGTGGTGGGTAAGTATCACATGGGTATTAAGGGACATGTTTGTAAT
CATAGTTTGGGATCTTTGAGACTGTTTTTTATTTTTTATCTCTTACACCTGTGCTATATTGTCTCCCAGTAGCTTTTGCATTAAGTGCGT
AAATAGATGCATGCATGCAAAGATGCATATTAAGTTTCAGCTATAGTACATAGCTGAAATGCATTAACTGGTTACCTACTGTTCATCAGT
TACTCTGCTGTGTACCTTAATTTAAGAACATTTAAGAGTTTAGGCCTTGTGTTTCCTTTGAATAATTATGTGTGTTTTCCTCCACTTCAT
TTAGATGAGCTGAAGCACATTATTGGGGCTGAGACAACACGGAAAGGTATTCTTCGTGTTTTTGAAATGTTTCAGCACAACCAATTAAAT
AGGAGAATGGTTTATGTCTTCTTGGAAGGCTTTTTAGAAACCTTATTTCCACAGTATAAATTCCGTGAACTTTTCAACAAACTGCATTCA
CGGTCAAAGCAGATGCAGAAATATAAACAGAAACTTCAAACTACTCAAGCGCCTTCTTTGCAGAAAAGGTGACACTCCACTCTATGAAGC
TGGTGTTCATTTTGTCCAGGACTAATGGTATGGACAGATCTTCTGGGGCTTAACTCAAATACTGTTGTGTCTGCACCAGTCTTTTAGTGT
CTCAAAATAGATTATTAATACATCCATAAGTCTGTGGTTCTTCTCATTCTCATCTATAATCCACCACTACCAAGAGAGATTTCTGTGTCT
TAAATGATTTGGTGCATATTTTGCAACATTGAGAGAAAACTGCCCCCATCTCAAGCAAGAATGGCGTTGGTTTCTTCCATTTCAAACTAA
TCAGCATTCTCCAGCAATGACAAAGTGCCAGAGTGTATATATGAAAGCTAAGGAAAGCACAAAACAATGGTTCAGAGATAAATTGGCTAA
TTTGTTTAACAGTTGGAGACTGTGCAATGTACGACTTGGAGGAGTTTGTTTGGCATAATGATTTTGTAGGTCTGTCAGCATTTTGATATA
TTGTGGATTAGCCAGGTGAATGATCCTTGAAACATCTCTTTCAGGTCTGGAGAAAGAGACAGAATGCCCTTAAAGTGTGAAATAACCTTA
TACCTGAATTACAGTTTTGTGATATAAAATAAAGCTGAGTATAAAATAAAACCAATCAAACACAGAATTTGATTGGATTTGTTATTCATT
GGTATACAACAATTTTTATTCTTATGTGTGCTTTAAGGGCTGTGTTTTGCTCTTAGGGTACTCAATTTTATGTTTCCTTTTGGCATTCTT
TGTGCAAAAAGAAGCATGTGGTGGCTCTCATTTAAATTTCAAAATTATTAGTTTTATCTTTAACAGATTACTGATTATACAGAAGATATA
ATTTATTGGAAGAACTGCCAAATACATTTTGTCCTTCTAAAAATATGGAAATTTAAATAGTAGTCTGGAAAGTTACCATATGATAATTTT
TAATTGTGTGATCTAGACATGCCTTAGGTAACTGCAGAAATAGCAAATTAAATGATTAATGAGCTTATTAGTCATAGTAAACATACAGAT
TCCTAATTCTATGACAGTGTACATATATGAAAATAAATGATGAAAAAAGAACTATAATATTTTTAAAAATATGCTTTTATTTATATTTCA
CATAATGTAAAGTTCTACAAAATAAAGCTAGTAGGCAAGACCCCTCAGTGTATACCTTTAAACCCATAAATTAATTTTATATCAATAAAA

>83124_83124_3_SLC38A9-SNX13_SLC38A9_chr5_54993674_ENST00000539768_SNX13_chr7_17838777_ENST00000409389_length(amino acids)=117AA_BP=
MFISYSAVYLNLRTFKSLGLVFPLNNYVCFPPLHLDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVYVFLEGFLETLFPQYKFRELFN

--------------------------------------------------------------
>83124_83124_4_SLC38A9-SNX13_SLC38A9_chr5_54993674_ENST00000539768_SNX13_chr7_17838777_ENST00000428135_length(transcript)=3973nt_BP=113nt
ATGGCAAATATGAATAGTGATTCTAGGCATCTTGGCACCTCTGAGGTAGATCATGAAAGAGATCCTGGACCTATGAATATCCAGTTTGAG
CCATCGGATCTAAGATCCAAAAGGTGGATGACAATATTCCACTTAGGGTAATGCTGCTTCTCATGGATGAAGTATTCGACTTAAAAGAAA
GAAATCAGTGGTTGCGAAGGAATATCAAAAACCTACTTCAACAGCTTATTAGAGCTACATATGGCGATACTATTAATAGAAAAATAGTTG
ACCATGTTGACTGGATGACTTCACCTGAACAAGTAGCCGACTCAGTGAAACGTTTCAGAGATGCATTTTGGCCAAATGGCATTTTAGCAG
AGGCTGTTCCATGCAGAGATAAAAGTATTCGAATGAGAACAAGAGTAGCAGGAAAAACGAAATTACTTGCAATTATGCCAGATGAGCTGA
AGCACATTATTGGGGCTGAGACAACACGGAAAGGTATTCTTCGTGTTTTTGAAATGTTTCAGCACAACCAATTAAATAGGAGAATGGTTT
ATGTCTTCTTGGAAGGCTTTTTAGAAACCTTATTTCCACAGTATAAATTCCGTGAACTTTTCAACAAACTGCATTCACGGTCAAAGCAGA
TGCAGAAATATAAACAGAAACTTCAAACTACTCAAGCGCCTTCTTTGCAGAAAAGGTGACACTCCACTCTATGAAGCTGGTGTTCATTTT
GTCCAGGACTAATGGTATGGACAGATCTTCTGGGGCTTAACTCAAATACTGTTGTGTCTGCACCAGTCTTTTAGTGTCTCAAAATAGATT
ATTAATACATCCATAAGTCTGTGGTTCTTCTCATTCTCATCTATAATCCACCACTACCAAGAGAGATTTCTGTGTCTTAAATGATTTGGT
GCATATTTTGCAACATTGAGAGAAAACTGCCCCCATCTCAAGCAAGAATGGCGTTGGTTTCTTCCATTTCAAACTAATCAGCATTCTCCA
GCAATGACAAAGTGCCAGAGTGTATATATGAAAGCTAAGGAAAGCACAAAACAATGGTTCAGAGATAAATTGGCTAATTTGTTTAACAGT
TGGAGACTGTGCAATGTACGACTTGGAGGAGTTTGTTTGGCATAATGATTTTGTAGGTCTGTCAGCATTTTGATATATTGTGGATTAGCC
AGGTGAATGATCCTTGAAACATCTCTTTCAGGTCTGGAGAAAGAGACAGAATGCCCTTAAAGTGTGAAATAACCTTATACCTGAATTACA
GTTTTGTGATATAAAATAAAGCTGAGTATAAAATAAAACCAATCAAACACAGAATTTGATTGGATTTGTTATTCATTGGTATACAACAAT
TTTTATTCTTATGTGTGCTTTAAGGGCTGTGTTTTGCTCTTAGGGTACTCAATTTTATGTTTCCTTTTGGCATTCTTTGTGCAAAAAGAA
GCATGTGGTGGCTCTCATTTAAATTTCAAAATTATTAGTTTTATCTTTAACAGATTACTGATTATACAGAAGATATAATTTATTGGAAGA
ACTGCCAAATACATTTTGTCCTTCTAAAAATATGGAAATTTAAATAGTAGTCTGGAAAGTTACCATATGATAATTTTTAATTGTGTGATC
TAGACATGCCTTAGGTAACTGCAGAAATAGCAAATTAAATGATTAATGAGCTTATTAGTCATAGTAAACATACAGATTCCTAATTCTATG
ACAGTGTACATATATGAAAATAAATGATGAAAAAAGAACTATAATATTTTTAAAAATATGCTTTTATTTATATTTCACATAATGTAAAGT
TCTACAAAATAAAGCTAGTAGGCAAGACCCCTCAGTGTATACCTTTAAACCCATAAATTAATTTTATATCAATAAAATAAAATACTTTCT
CTAGTTTTGGAGCTTCTGTATTTCCTATAGTTTTCTGACTGTCCATTTTATCCATCTTAGAAGTATTCACATCCCTTCTATGCAGGATTT
CTGCATAGTTTTAAATACTTTCATTGCCTAAGGGTTTGGGTGTGTCAGCTTTTTTTGTTTTAAAAATATTTAACACTAAAACCTTAAAAT
AATGAAGCTACTTATCAGACCACTGAGCCAAGATCCTGGTATTAAAAGAAAGTCTGGGTGCTTAAGATAAAGGGACAGAGTATTGGTATC
CCAGTTATTTGGGAGCTTTAAGATTGGAACAAGATATCACTGTCTTGTTTTCACTTAGATCCTACTTACAAAGTGAGGGTTATTAACAGA
ATAAAGCCTTCCTTTAAAGCTTTATAATAATCATATTTATTAATAATGCTGTTGTGCATACTTATAGTATGCATATATTCAGCATATGTT
GCATGTCTTCAGAATTACATAAAATGAAATCCCTTTCATTGCAACTTGCAAGTGAGAAAAGATCCTTAGTGGCTCTGGTGGAAGAAATAG
TATTTCTTCTTCTCAGGGTGTCTCCCTGCCTTGGCCCCTCCCTGAGCCCCAGGCTTTAAAAGTGAAAATGTTTGAAACATGAAACATGTC
TGTAGGAAGCATCAGCATGGCCATAAGTGCAGTGATTTTCATATATGCCTCTGCCCATTTCAAATATATTTTTGACATGAATAAATCTAA
CAGTATACAGAATAATTCATGTAAGACCCTAACGTGTACATGTGAAAAAGCATTTCTATATAATGTGAGGAGCACTGGCCATCAATTAGG
GAAATAAAGGTCATGTAATATTGCAAATTTTCAAAATAGAGCCCTGCAAGATAACTGCAATCATACCAAAAACTATTTGAGTAAATGGAT
TTTTAAAGTAATTTTTGTTTAGAAGAGTTTATATTTCAGAAGCAGAAAATGTCAAATGATAGTCTTTGTAAATGGTGGTGCACCTTCTCT
ATGCACATCTGTCTTTTACATCAGAAAGAGCTGTGGTCATGCTAAAATTAGAGATAACTTTTTGAATGACTTGGTCAAGCTGTGTGTAAA
ATATTTAACCATAAGTCAAGTACAGTGTACTATGTTTAATAAAGTTACATTTAATGCATTTATTGCATATATGAATATATACATGAAGAG
GCTTTATGTCTTCTGGTATTTGATTTTGAATGTTTTTTAAGTCAGTGGTGCCTTTAGGCAAGAACTTTCGAAATTAATCATTCTTTGTGT
TTTCTGATTTTTCAGGTAACATGTACACTATTTAGAAACCATCATAGTTTATTCACCTTAAAAAATTGATTGTATTATTTAAATATATCA
CTTAGATGGGCATTTCCTATAATTAGGATATTCCAAATAGTTGCTGAAATCAATTGTGCCATTGACCAATGGATGCACTTGGTTAGCCTT
AATTTTTTTAAAAAAAAAAAAAACAAAAACTTTCTTGAATATTTCAGTTTGTTCATTTTAAGTTTGTGCTGCTGGTATTTGGGAAGAAAA
ATCAATCAGTTAAGTGCTACCAGAAAGTGTACCAATTTTTATAAAAATTAAGAATGATATAAATTTCACAATCTAAAATTTTAATTTTGT
GCAATATTTTCATTTAATGCATGTGTATTTGAGTAATTGTAAGATAAATGAATTTTTAATTTTTTGAGATGTAGCTTAAACTGTCTTCTT
AATCCAACAACTTACATTCCGTTGTTGCTGCATCCTTTTATTTAAGGACTTGTTTTAAAAGTCTTTTTGTCACTCCTTGGAAAATTCTTT
TATTAGTAGTAAATTTTGCTTTTAGGAGCATGGCTCCTGTATTACAAGGGAAAAAATATGAAGAGCACATTTTAGGATTATAATTGTTAA
AAGATAATGTGTGCATATCATTGTACAGTAAGTGTCAACTGTGTGCCTAACTGTTCTATCAATACTTTCTTTCTTTAACAAAGAAGAAAC
AACAATCAGAATGTCAGTTATTTTTATTCAACTAAAAGGATTAAAAAATTTATTTGGTTTGTGTTCTGTCCATTAGAAAATACTAATAAA

>83124_83124_4_SLC38A9-SNX13_SLC38A9_chr5_54993674_ENST00000539768_SNX13_chr7_17838777_ENST00000428135_length(amino acids)=182AA_BP=
MLLLMDEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDAFWPNGILAEAVPCRDKSIRMRTRVA
GKTKLLAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVYVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQTTQAPSLQ

--------------------------------------------------------------

Top

Fusion Gene PPI Analysis for SLC38A9-SNX13

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)

Hgene

Hgene's interactors

Tgene

Tgene's interactors

- Retained PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

- Retained PPIs, but lost function due to frame-shift fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

Top

Related Drugs for SLC38A9-SNX13

Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)

Partner

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

Related Diseases for SLC38A9-SNX13

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source