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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SLC45A3-ETV1 (FusionGDB2 ID:83328)

Fusion Gene Summary for SLC45A3-ETV1

check button Fusion gene summary
Fusion gene informationFusion gene name: SLC45A3-ETV1
Fusion gene ID: 83328
HgeneTgene
Gene symbol

SLC45A3

ETV1

Gene ID

85414

2115

Gene namesolute carrier family 45 member 3ETS variant transcription factor 1
SynonymsIPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRSTER81
Cytomap

1q32.1

7p21.2

Type of geneprotein-codingprotein-coding
Descriptionsolute carrier family 45 member 3prostate cancer associated protein 2prostate cancer associated protein 6prostate cancer associated protein 8prostate cancer-associated gene 2prostate cancer-associated gene 6prostate cancer-associated gene 8prosteinETS translocation variant 1ETS variant 1ets variant gene 1ets-related protein 81
Modification date2020031320200313
UniProtAcc.

P50549

Ensembl transtripts involved in fusion geneENST00000367145, ENST00000460934, 
ENST00000242066, ENST00000343495, 
ENST00000399357, ENST00000403527, 
ENST00000403685, ENST00000405192, 
ENST00000405218, ENST00000405358, 
ENST00000420159, ENST00000430479, 
ENST00000476720, 
Fusion gene scores* DoF score21 X 18 X 4=151213 X 27 X 6=2106
# samples 3330
** MAII scorelog2(33/1512*10)=-2.19592020997526
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(30/2106*10)=-2.81147103052984
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SLC45A3 [Title/Abstract] AND ETV1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSLC45A3(205649522)-ETV1(13978871), # samples:15
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneETV1

GO:0045944

positive regulation of transcription by RNA polymerase II

12750007


check buttonFusion gene breakpoints across SLC45A3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across ETV1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4adenocarcinomaEF632109SLC45A3chr1

205649747

ETV1chr7

13978820

ChimerDB4PRADTCGA-2A-A8W3-01ASLC45A3chr1

205649521

-ETV1chr7

13978870

-
ChimerDB4PRADTCGA-2A-A8W3-01ASLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-2A-A8W3SLC45A3chr1

205649521

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-2A-A8W3SLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-G9-6336-01ASLC45A3chr1

205649522

-ETV1chr7

13975521

-
ChimerDB4PRADTCGA-HC-A6AQ-01ASLC45A3chr1

205649521

-ETV1chr7

13978870

-
ChimerDB4PRADTCGA-HC-A6AQ-01ASLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-HC-A6AQSLC45A3chr1

205649521

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-HC-A6AQSLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-HC-A8CY-01ASLC45A3chr1

205649521

-ETV1chr7

13978870

-
ChimerDB4PRADTCGA-HC-A8CY-01ASLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-HC-A8CYSLC45A3chr1

205649521

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-HC-A8CYSLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-J4-A83M-01ASLC45A3chr1

205648939

-ETV1chr7

14017104

-
ChimerDB4PRADTCGA-J4-A83M-01ASLC45A3chr1

205649521

-ETV1chr7

14017104

-
ChimerDB4PRADTCGA-J4-A83M-01ASLC45A3chr1

205649522

-ETV1chr7

14017105

-
ChimerDB4PRADTCGA-J4-A83MSLC45A3chr1

205649521

-ETV1chr7

14017105

-
ChimerDB4PRADTCGA-J4-A83MSLC45A3chr1

205649522

-ETV1chr7

14017105

-
ChimerDB4PRADTCGA-KK-A7AP-01ASLC45A3chr1

205649521

-ETV1chr7

13978870

-
ChimerDB4PRADTCGA-KK-A7AP-01ASLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-KK-A7APSLC45A3chr1

205649521

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-KK-A7APSLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-M7-A71Y-01ASLC45A3chr1

205649521

-ETV1chr7

13978870

-
ChimerDB4PRADTCGA-M7-A71Y-01ASLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-M7-A71YSLC45A3chr1

205649521

-ETV1chr7

13978871

-
ChimerDB4PRADTCGA-M7-A71YSLC45A3chr1

205649522

-ETV1chr7

13978871

-
ChimerKB3..SLC45A3chr1

205649521

-ETV1chr7

13975521

-
ChimerKB3..SLC45A3chr1

25657512

-ETV1chr7

14017105

-
ChiTaRS5.0N/AEF632109SLC45A3chr1

205649522

-ETV1chr7

13978873

-
ChiTaRS5.0N/AFW581623SLC45A3chr1

205649522

-ETV1chr7

13978873

-
ChiTaRS5.0N/AHZ416117SLC45A3chr1

205649522

-ETV1chr7

13978873

-
ChiTaRS5.0N/AJB772364SLC45A3chr1

205649522

-ETV1chr7

13978873

-
ChiTaRS5.0N/ALV708921SLC45A3chr1

205649522

-ETV1chr7

13978873

-
ChiTaRS5.0N/AMA648835SLC45A3chr1

205649522

-ETV1chr7

13978873

-


Top

Fusion Gene ORF analysis for SLC45A3-ETV1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000367145ENST00000242066SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000242066SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-3CDSENST00000367145ENST00000343495SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000343495SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-3CDSENST00000367145ENST00000399357SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-3CDSENST00000367145ENST00000399357SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-3CDSENST00000367145ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-3CDSENST00000367145ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000399357SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-3CDSENST00000367145ENST00000403527SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000403527SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-3CDSENST00000367145ENST00000403685SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000403685SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-3CDSENST00000367145ENST00000405192SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000405192SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-3CDSENST00000367145ENST00000405218SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000405218SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-3CDSENST00000367145ENST00000405358SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000405358SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-3CDSENST00000367145ENST00000420159SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000420159SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649522

-ETV1chr7

13978871

-
5UTR-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

13978871

-
5UTR-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

13978870

-
5UTR-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649522

-ETV1chr7

13978873

-
5UTR-intronENST00000367145ENST00000242066SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-intronENST00000367145ENST00000242066SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000343495SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-intronENST00000367145ENST00000343495SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000399357SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000403527SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-intronENST00000367145ENST00000403527SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000403685SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-intronENST00000367145ENST00000403685SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000405192SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-intronENST00000367145ENST00000405192SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000405218SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-intronENST00000367145ENST00000405218SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000405358SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-intronENST00000367145ENST00000405358SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000420159SLC45A3chr1

205649522

-ETV1chr7

13975521

-
5UTR-intronENST00000367145ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

14017104

-
5UTR-intronENST00000367145ENST00000420159SLC45A3chr1

205649522

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

14017105

-
5UTR-intronENST00000367145ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-3CDSENST00000367145ENST00000242066SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000343495SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000399357SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000399357SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-3CDSENST00000367145ENST00000399357SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-3CDSENST00000367145ENST00000403527SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000403685SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000405192SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000405218SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000405358SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000420159SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000430479SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000367145ENST00000430479SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-3CDSENST00000367145ENST00000430479SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-3CDSENST00000460934ENST00000242066SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000242066SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000242066SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-3CDSENST00000460934ENST00000343495SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000343495SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000343495SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-3CDSENST00000460934ENST00000399357SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-3CDSENST00000460934ENST00000403527SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000403527SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000403527SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-3CDSENST00000460934ENST00000403685SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000403685SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000403685SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-3CDSENST00000460934ENST00000405192SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000405192SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000405192SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-3CDSENST00000460934ENST00000405218SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000405218SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000405218SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-3CDSENST00000460934ENST00000405358SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000405358SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000405358SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-3CDSENST00000460934ENST00000420159SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000420159SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000420159SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649747

ETV1chr7

13978820

intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-3CDSENST00000460934ENST00000430479SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-5UTRENST00000367145ENST00000476720SLC45A3chr1

205649747

ETV1chr7

13978820

intron-5UTRENST00000367145ENST00000476720SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-5UTRENST00000367145ENST00000476720SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649747

ETV1chr7

13978820

intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649522

-ETV1chr7

13978871

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

13978871

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

13978870

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-5UTRENST00000460934ENST00000476720SLC45A3chr1

205649522

-ETV1chr7

13978873

-
intron-intronENST00000367145ENST00000242066SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000367145ENST00000242066SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000367145ENST00000343495SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000367145ENST00000343495SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000367145ENST00000403527SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000367145ENST00000403527SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000367145ENST00000403685SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000367145ENST00000403685SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000367145ENST00000405192SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000367145ENST00000405192SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000367145ENST00000405218SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000367145ENST00000405218SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000367145ENST00000405358SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000367145ENST00000405358SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000367145ENST00000420159SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000367145ENST00000420159SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000242066SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000242066SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000242066SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000242066SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000242066SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000343495SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000343495SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000343495SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000343495SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000343495SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000399357SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000399357SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000403527SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000403527SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000403527SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000403527SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000403527SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000403685SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000403685SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000403685SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000403685SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000403685SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000405192SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000405192SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000405192SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000405192SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000405192SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000405218SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000405218SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000405218SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000405218SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000405218SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000405358SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000405358SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000405358SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000405358SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000405358SLC45A3chr1

25657512

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000420159SLC45A3chr1

205649522

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000420159SLC45A3chr1

205648939

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

14017104

-
intron-intronENST00000460934ENST00000420159SLC45A3chr1

205649522

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

14017105

-
intron-intronENST00000460934ENST00000420159SLC45A3chr1

205649521

-ETV1chr7

13975521

-
intron-intronENST00000460934ENST00000420159SLC45A3chr1

25657512

-ETV1chr7

14017105

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

Top

Fusion Genomic Features for SLC45A3-ETV1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for SLC45A3-ETV1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:205649522/:13978871)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.ETV1

P50549

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator that binds to DNA sequences containing the consensus pentanucleotide 5'-CGGA[AT]-3' (PubMed:7651741). Required for olfactory dopaminergic neuron differentiation; may directly activate expression of tyrosine hydroxylase (TH) (By similarity). {ECO:0000250|UniProtKB:P41164, ECO:0000269|PubMed:7651741}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for SLC45A3-ETV1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for SLC45A3-ETV1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SLC45A3-ETV1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SLC45A3-ETV1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource