FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:SPATA6-MAD2L2 (FusionGDB2 ID:85582)

Fusion Gene Summary for SPATA6-MAD2L2

check button Fusion gene summary
Fusion gene informationFusion gene name: SPATA6-MAD2L2
Fusion gene ID: 85582
HgeneTgene
Gene symbol

SPATA6

MAD2L2

Gene ID

54558

10459

Gene namespermatogenesis associated 6mitotic arrest deficient 2 like 2
SynonymsHASH|SRF-1|SRF1FANCV|MAD2B|POLZ2|REV7
Cytomap

1p33

1p36.22

Type of geneprotein-codingprotein-coding
Descriptionspermatogenesis-associated protein 6spermatogenesis-related factor-1testicular tissue protein Li 178mitotic spindle assembly checkpoint protein MAD2BMAD2 (mitotic arrest deficient, yeast, homolog)-like 2MAD2 mitotic arrest deficient-like 2MAD2-like protein 2REV7 homologhREV7mitotic arrest deficient 2-like protein 2mitotic arrest deficient homolog
Modification date2020031320200313
UniProtAcc.

Q9UI95

Ensembl transtripts involved in fusion geneENST00000371843, ENST00000371847, 
ENST00000396199, ENST00000463938, 
ENST00000235310, ENST00000376667, 
ENST00000376669, ENST00000376672, 
ENST00000376692, 
Fusion gene scores* DoF score9 X 9 X 7=5672 X 2 X 2=8
# samples 114
** MAII scorelog2(11/567*10)=-2.36584521141757
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/8*10)=2.32192809488736
Context

PubMed: SPATA6 [Title/Abstract] AND MAD2L2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSPATA6(48917224)-MAD2L2(11737005), # samples:3
Anticipated loss of major functional domain due to fusion event.SPATA6-MAD2L2 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneMAD2L2

GO:0000122

negative regulation of transcription by RNA polymerase II

19443654

TgeneMAD2L2

GO:0033138

positive regulation of peptidyl-serine phosphorylation

17296730

TgeneMAD2L2

GO:0042177

negative regulation of protein catabolic process

11459826

TgeneMAD2L2

GO:0042772

DNA damage response, signal transduction resulting in transcription

17296730

TgeneMAD2L2

GO:0043433

negative regulation of DNA-binding transcription factor activity

19443654

TgeneMAD2L2

GO:0045830

positive regulation of isotype switching

29656893

TgeneMAD2L2

GO:1904667

negative regulation of ubiquitin protein ligase activity

11459826

TgeneMAD2L2

GO:2000042

negative regulation of double-strand break repair via homologous recombination

29656893

TgeneMAD2L2

GO:2001034

positive regulation of double-strand break repair via nonhomologous end joining

29656893


check buttonFusion gene breakpoints across SPATA6 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across MAD2L2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-E9-A22A-01ASPATA6chr1

48917224

-MAD2L2chr1

11737005

-
ChimerDB4BRCATCGA-E9-A22ASPATA6chr1

48917223

-MAD2L2chr1

11737005

-


Top

Fusion Gene ORF analysis for SPATA6-MAD2L2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000371843ENST00000235310SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371843ENST00000235310SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371843ENST00000376667SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371843ENST00000376667SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371843ENST00000376669SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371843ENST00000376669SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371843ENST00000376672SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371843ENST00000376672SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371843ENST00000376692SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371843ENST00000376692SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000235310SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000235310SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000376667SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000376667SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000376669SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000376669SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000376672SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000376672SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000376692SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
Frame-shiftENST00000371847ENST00000376692SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000235310SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000235310SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000376667SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000376667SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000376669SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000376669SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000376672SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000376672SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000376692SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
In-frameENST00000396199ENST00000376692SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000235310SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000235310SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000376667SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000376667SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000376669SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000376669SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000376672SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000376672SPATA6chr1

48917223

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000376692SPATA6chr1

48917224

-MAD2L2chr1

11737005

-
intron-3CDSENST00000463938ENST00000376692SPATA6chr1

48917223

-MAD2L2chr1

11737005

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000396199SPATA6chr148917224-ENST00000235310MAD2L2chr111737005-1083383356787143
ENST00000396199SPATA6chr148917224-ENST00000376692MAD2L2chr111737005-1082383356787143
ENST00000396199SPATA6chr148917224-ENST00000376672MAD2L2chr111737005-1077383356826156
ENST00000396199SPATA6chr148917224-ENST00000376669MAD2L2chr111737005-924383356826156
ENST00000396199SPATA6chr148917224-ENST00000376667MAD2L2chr111737005-815383356787143
ENST00000396199SPATA6chr148917223-ENST00000235310MAD2L2chr111737005-1083383356787143
ENST00000396199SPATA6chr148917223-ENST00000376692MAD2L2chr111737005-1082383356787143
ENST00000396199SPATA6chr148917223-ENST00000376672MAD2L2chr111737005-1077383356826156
ENST00000396199SPATA6chr148917223-ENST00000376669MAD2L2chr111737005-924383356826156
ENST00000396199SPATA6chr148917223-ENST00000376667MAD2L2chr111737005-815383356787143

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000396199ENST00000235310SPATA6chr148917224-MAD2L2chr111737005-0.0196916140.9803084
ENST00000396199ENST00000376692SPATA6chr148917224-MAD2L2chr111737005-0.0196290280.980371
ENST00000396199ENST00000376672SPATA6chr148917224-MAD2L2chr111737005-0.0132296190.9867704
ENST00000396199ENST00000376669SPATA6chr148917224-MAD2L2chr111737005-0.0136948540.9863051
ENST00000396199ENST00000376667SPATA6chr148917224-MAD2L2chr111737005-0.0155393520.98446065
ENST00000396199ENST00000235310SPATA6chr148917223-MAD2L2chr111737005-0.0196916140.9803084
ENST00000396199ENST00000376692SPATA6chr148917223-MAD2L2chr111737005-0.0196290280.980371
ENST00000396199ENST00000376672SPATA6chr148917223-MAD2L2chr111737005-0.0132296190.9867704
ENST00000396199ENST00000376669SPATA6chr148917223-MAD2L2chr111737005-0.0136948540.9863051
ENST00000396199ENST00000376667SPATA6chr148917223-MAD2L2chr111737005-0.0155393520.98446065

Top

Fusion Genomic Features for SPATA6-MAD2L2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for SPATA6-MAD2L2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr1:48917224/chr1:11737005)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.MAD2L2

Q9UI95

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Adapter protein able to interact with different proteins and involved in different biological processes (PubMed:11459825, PubMed:11459826, PubMed:17719540, PubMed:17296730, PubMed:19443654, PubMed:29656893). Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis (PubMed:20164194). Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions (PubMed:20164194). Component of the shieldin complex, which plays an important role in repair of DNA double-stranded breaks (DSBs) (PubMed:29656893). During G1 and S phase of the cell cycle, the complex functions downstream of TP53BP1 to promote non-homologous end joining (NHEJ) and suppress DNA end resection (PubMed:29656893). Mediates various NHEJ-dependent processes including immunoglobulin class-switch recombination, and fusion of unprotected telomeres (PubMed:29656893). May also regulate another aspect of cellular response to DNA damage through regulation of the JNK-mediated phosphorylation and activation of the transcriptional activator ELK1 (PubMed:17296730). Inhibits the FZR1- and probably CDC20-mediated activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle (PubMed:11459825, PubMed:17719540). Regulates TCF7L2-mediated gene transcription and may play a role in epithelial-mesenchymal transdifferentiation (PubMed:19443654). {ECO:0000269|PubMed:11459825, ECO:0000269|PubMed:11459826, ECO:0000269|PubMed:17296730, ECO:0000269|PubMed:17719540, ECO:0000269|PubMed:19443654, ECO:0000269|PubMed:20164194, ECO:0000269|PubMed:29656893}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneMAD2L2chr1:48917223chr1:11737005ENST0000023531051113_20377212.0DomainHORMA
TgeneMAD2L2chr1:48917223chr1:11737005ENST000003766673913_20377212.0DomainHORMA
TgeneMAD2L2chr1:48917223chr1:11737005ENST000003766923913_20377212.0DomainHORMA
TgeneMAD2L2chr1:48917224chr1:11737005ENST0000023531051113_20377212.0DomainHORMA
TgeneMAD2L2chr1:48917224chr1:11737005ENST000003766673913_20377212.0DomainHORMA
TgeneMAD2L2chr1:48917224chr1:11737005ENST000003766923913_20377212.0DomainHORMA


Top

Fusion Gene Sequence for SPATA6-MAD2L2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>85582_85582_1_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000235310_length(transcript)=1083nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGCTCAGACTCGCTGTTGTCTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGA
TCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCACAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACA
TGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGCAGGATGTCCACATGCATGACCCCCGGCTGATACCACTAA
AAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCGCTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTG
ATGCCCAAACTGTCAGACTTTGGGGGATCCCCGCCTAGGGCAGTGCTGCATGGCTGCCCTGATTCCAAGTGCTCTTATCGCCTCTGTGTG
TGGATCGCCCGCCCCAGCCCGGGGCCGCTCAGGTCTGCTTGGAGGATGCCTCCCCCAGGAGGGCAGTGAGGGATGCCGCAACCTCGACTT
CTCAGCCTCCTGGGGTTCCGCCGGCCAACACTGTCTGTCTCAAATACTGTGCTGTGAGTTGTTTCAATAAAGGGGCCCCAAGGGCTGGGC

>85582_85582_1_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000235310_length(amino acids)=143AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATR

--------------------------------------------------------------
>85582_85582_2_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376667_length(transcript)=815nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGCTCAGACTCGCTGTTGTCTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGA
TCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCACAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACA
TGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGCAGGATGTCCACATGCATGACCCCCGGCTGATACCACTAA
AAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCGCTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTG

>85582_85582_2_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376667_length(amino acids)=143AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATR

--------------------------------------------------------------
>85582_85582_3_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376669_length(transcript)=924nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGGTGGGCTGCCCCTGCCCCTCGCCCACTAGCTGGCATCAGCTCAGACTCGCTGTTGT
CTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGATCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCA
CAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACATGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGC
AGGATGTCCACATGCATGACCCCCGGCTGATACCACTAAAAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCG
CTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTGATGCCCAAACTGTCAGACTTTGGGGGATCCCCGCCTAGGGCAGTGCTGCAT

>85582_85582_3_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376669_length(amino acids)=156AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSIRWAAPAPRPLAGISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCT

--------------------------------------------------------------
>85582_85582_4_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376672_length(transcript)=1077nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGGTGGGCTGCCCCTGCCCCTCGCCCACTAGCTGGCATCAGCTCAGACTCGCTGTTGT
CTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGATCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCA
CAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACATGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGC
AGGATGTCCACATGCATGACCCCCGGCTGATACCACTAAAAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCG
CTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTGATGCCCAAACTGTCAGACTTTGGGGGATCCCCGCCTAGGGCAGTGCTGCAT
GGCTGCCCTGATTCCAAGTGCTCTTATCGCCTCTGTGTGTGGATCGCCCGCCCCAGCCCGGGGCCGCTCAGGTCTGCTTGGAGGATGCCT

>85582_85582_4_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376672_length(amino acids)=156AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSIRWAAPAPRPLAGISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCT

--------------------------------------------------------------
>85582_85582_5_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376692_length(transcript)=1082nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGCTCAGACTCGCTGTTGTCTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGA
TCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCACAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACA
TGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGCAGGATGTCCACATGCATGACCCCCGGCTGATACCACTAA
AAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCGCTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTG
ATGCCCAAACTGTCAGACTTTGGGGGATCCCCGCCTAGGGCAGTGCTGCATGGCTGCCCTGATTCCAAGTGCTCTTATCGCCTCTGTGTG
TGGATCGCCCGCCCCAGCCCGGGGCCGCTCAGGTCTGCTTGGAGGATGCCTCCCCCAGGAGGGCAGTGAGGGATGCCGCAACCTCGACTT
CTCAGCCTCCTGGGGTTCCGCCGGCCAACACTGTCTGTCTCAAATACTGTGCTGTGAGTTGTTTCAATAAAGGGGCCCCAAGGGCTGGGC

>85582_85582_5_SPATA6-MAD2L2_SPATA6_chr1_48917223_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376692_length(amino acids)=143AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATR

--------------------------------------------------------------
>85582_85582_6_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000235310_length(transcript)=1083nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGCTCAGACTCGCTGTTGTCTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGA
TCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCACAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACA
TGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGCAGGATGTCCACATGCATGACCCCCGGCTGATACCACTAA
AAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCGCTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTG
ATGCCCAAACTGTCAGACTTTGGGGGATCCCCGCCTAGGGCAGTGCTGCATGGCTGCCCTGATTCCAAGTGCTCTTATCGCCTCTGTGTG
TGGATCGCCCGCCCCAGCCCGGGGCCGCTCAGGTCTGCTTGGAGGATGCCTCCCCCAGGAGGGCAGTGAGGGATGCCGCAACCTCGACTT
CTCAGCCTCCTGGGGTTCCGCCGGCCAACACTGTCTGTCTCAAATACTGTGCTGTGAGTTGTTTCAATAAAGGGGCCCCAAGGGCTGGGC

>85582_85582_6_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000235310_length(amino acids)=143AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATR

--------------------------------------------------------------
>85582_85582_7_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376667_length(transcript)=815nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGCTCAGACTCGCTGTTGTCTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGA
TCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCACAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACA
TGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGCAGGATGTCCACATGCATGACCCCCGGCTGATACCACTAA
AAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCGCTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTG

>85582_85582_7_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376667_length(amino acids)=143AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATR

--------------------------------------------------------------
>85582_85582_8_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376669_length(transcript)=924nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGGTGGGCTGCCCCTGCCCCTCGCCCACTAGCTGGCATCAGCTCAGACTCGCTGTTGT
CTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGATCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCA
CAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACATGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGC
AGGATGTCCACATGCATGACCCCCGGCTGATACCACTAAAAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCG
CTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTGATGCCCAAACTGTCAGACTTTGGGGGATCCCCGCCTAGGGCAGTGCTGCAT

>85582_85582_8_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376669_length(amino acids)=156AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSIRWAAPAPRPLAGISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCT

--------------------------------------------------------------
>85582_85582_9_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376672_length(transcript)=1077nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGGTGGGCTGCCCCTGCCCCTCGCCCACTAGCTGGCATCAGCTCAGACTCGCTGTTGT
CTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGATCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCA
CAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACATGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGC
AGGATGTCCACATGCATGACCCCCGGCTGATACCACTAAAAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCG
CTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTGATGCCCAAACTGTCAGACTTTGGGGGATCCCCGCCTAGGGCAGTGCTGCAT
GGCTGCCCTGATTCCAAGTGCTCTTATCGCCTCTGTGTGTGGATCGCCCGCCCCAGCCCGGGGCCGCTCAGGTCTGCTTGGAGGATGCCT

>85582_85582_9_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376672_length(amino acids)=156AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSIRWAAPAPRPLAGISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCT

--------------------------------------------------------------
>85582_85582_10_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376692_length(transcript)=1082nt_BP=383nt
GCTGGACCGCGGGCCCCGGCCTGGGGGCCACTGCTGCCACCGCCGCCGCCACCTCGTCTCCTCCCCGTCCCCGCCCAGCCCCAGGTCTCC
CCGCCTCACTCGGGCCCGTGGCCGGGGTCACTCCCCGCCGCCCCTCCCCGCACGGATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGC
GCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCGTGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAA
AAAGACACAATGTGTCCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGATCCTGG
AGATGTGGTTACACAGCTTGAATAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCCCAGTGGAGAAATTCGTCT
TTGAGATCACCCAGCCTCCACTGCTGTCCATCAGCTCAGACTCGCTGTTGTCTCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGA
TCAGCGTGTGCGATGCCGTCCTGGACCACAACCCCCCAGGCTGTACCTTCACAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACA
TGGAGAAGATCCAGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGCAGGATGTCCACATGCATGACCCCCGGCTGATACCACTAA
AAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCGCTCATAAAGGCAGCTGAGGGGGCACCTGCCACCCCACTG
ATGCCCAAACTGTCAGACTTTGGGGGATCCCCGCCTAGGGCAGTGCTGCATGGCTGCCCTGATTCCAAGTGCTCTTATCGCCTCTGTGTG
TGGATCGCCCGCCCCAGCCCGGGGCCGCTCAGGTCTGCTTGGAGGATGCCTCCCCCAGGAGGGCAGTGAGGGATGCCGCAACCTCGACTT
CTCAGCCTCCTGGGGTTCCGCCGGCCAACACTGTCTGTCTCAAATACTGTGCTGTGAGTTGTTTCAATAAAGGGGCCCCAAGGGCTGGGC

>85582_85582_10_SPATA6-MAD2L2_SPATA6_chr1_48917224_ENST00000396199_MAD2L2_chr1_11737005_ENST00000376692_length(amino acids)=143AA_BP=6
MEMWLHSLNNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATR

--------------------------------------------------------------

Top

Fusion Gene PPI Analysis for SPATA6-MAD2L2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for SPATA6-MAD2L2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for SPATA6-MAD2L2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource