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	Fusion Gene Summary
	Fusion Gene ORF analysis
	Fusion Genomic Features
	Fusion Protein Features
	Fusion Gene Sequence
	Fusion Gene PPI analysis
	Related Drugs
	Related Diseases

Fusion gene:SPOCK3-MITF (FusionGDB2 ID:85904)

Fusion Gene Summary for SPOCK3-MITF

Fusion gene summary

Fusion gene information	Fusion gene name: SPOCK3-MITF
	Fusion gene ID: 85904
		Hgene	Tgene
	Gene symbol	SPOCK3	MITF
	Gene ID	50859	4286
	Gene name	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	melanocyte inducing transcription factor
	Synonyms	HSAJ1454\|TES-3\|TICN3	CMM8\|COMMAD\|MI\|WS2\|WS2A\|bHLHe32
	Cytomap	4q32.3	3p13
	Type of gene	protein-coding	protein-coding
	Description	testican-3SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	microphthalmia-associated transcription factorclass E basic helix-loop-helix protein 32melanogenesis associated transcription factormicrophtalmia-associated transcription factor
	Modification date	20200313	20200329
	UniProtAcc	.	O75030
	Ensembl transtripts involved in fusion gene	ENST00000357154, ENST00000357545, ENST00000421836, ENST00000502330, ENST00000504953, ENST00000506886, ENST00000507137, ENST00000510741, ENST00000511269, ENST00000511531, ENST00000512648, ENST00000512681, ENST00000534949, ENST00000535728, ENST00000541354, ENST00000541637,	ENST00000314557, ENST00000314589, ENST00000328528, ENST00000352241, ENST00000394348, ENST00000394351, ENST00000394355, ENST00000448226, ENST00000472437, ENST00000531774,
Fusion gene scores	* DoF score	5 X 5 X 1=25	10 X 9 X 7=630
	# samples	5	10
	** MAII score	log2(5/25*10)=1 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0	log2(10/630*10)=-2.65535182861255 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Context	PubMed: SPOCK3 [Title/Abstract] AND MITF [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint	SPOCK3(168068614)-MITF(69819462), # samples:1
Anticipated loss of major functional domain due to fusion event.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Tgene	MITF	GO:0010628	positive regulation of gene expression	22234890
Tgene	MITF	GO:0045893	positive regulation of transcription, DNA-templated	9647758
Tgene	MITF	GO:0045944	positive regulation of transcription by RNA polymerase II	20530484\|21209915
Tgene	MITF	GO:0065003	protein-containing complex assembly	20530484
Tgene	MITF	GO:2000144	positive regulation of DNA-templated transcription, initiation	8995290\|12204775
Tgene	MITF	GO:2001141	regulation of RNA biosynthetic process	16411896

Fusion gene breakpoints across SPOCK3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across MITF (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChiTaRS5.0	N/A	CD653035	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+

Top

Fusion Gene ORF analysis for SPOCK3-MITF

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
intron-intron	ENST00000357154	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357154	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357154	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357154	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357154	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357154	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357154	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357154	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357154	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357154	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000357545	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000421836	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000502330	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000504953	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000506886	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000507137	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000510741	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511269	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000511531	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512648	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000512681	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000534949	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000535728	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541354	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000314557	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000314589	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000328528	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000352241	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000394348	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000394351	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000394355	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000448226	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000472437	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+
intron-intron	ENST00000541637	ENST00000531774	SPOCK3	chr4	168068614	+	MITF	chr3	69819462	+

ORFfinder result based on the fusion transcript sequence of in-frame fusion genes.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

Seq length
(transcript)

BP loci
(transcript)

Predicted start
(transcript)

Predicted stop
(transcript)

Seq length
(amino acids)

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

No-coding score

Coding score

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Fusion Genomic Features for SPOCK3-MITF

FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

1-p

p (fusion gene breakpoint)

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for SPOCK3-MITF

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:168068614/:69819462)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
.	MITF O75030
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.	FUNCTION: Transcription factor that regulates the expression of genes with essential roles in cell differentiation, proliferation and survival. Binds to M-boxes (5'-TCATGTG-3') and symmetrical DNA sequences (E-boxes) (5'-CACGTG-3') found in the promoters of target genes, such as BCL2 and tyrosinase (TYR). Plays an important role in melanocyte development by regulating the expression of tyrosinase (TYR) and tyrosinase-related protein 1 (TYRP1). Plays a critical role in the differentiation of various cell types, such as neural crest-derived melanocytes, mast cells, osteoclasts and optic cup-derived retinal pigment epithelium. {ECO:0000269\|PubMed:10587587, ECO:0000269\|PubMed:22647378, ECO:0000269\|PubMed:27889061, ECO:0000269\|PubMed:9647758}.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page

* Minus value of BPloci means that the break pointn is located before the CDS.

- In-frame and retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

- In-frame and not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

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Fusion Gene Sequence for SPOCK3-MITF

For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for SPOCK3-MITF

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)

Hgene

Hgene's interactors

Tgene

Tgene's interactors

- Retained PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

- Retained PPIs, but lost function due to frame-shift fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

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Related Drugs for SPOCK3-MITF

Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)

Partner

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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Related Diseases for SPOCK3-MITF

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source