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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:BAZ2A-CKAP5 (FusionGDB2 ID:9040) |
Fusion Gene Summary for BAZ2A-CKAP5 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: BAZ2A-CKAP5 | Fusion gene ID: 9040 | Hgene | Tgene | Gene symbol | BAZ2A | CKAP5 | Gene ID | 11176 | 9793 |
| Gene name | bromodomain adjacent to zinc finger domain 2A | cytoskeleton associated protein 5 | |
| Synonyms | TIP5|WALp3 | CHTOG|MSPS|TOG|TOGp|ch-TOG | |
| Cytomap | 12q13.3 | 11p11.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | bromodomain adjacent to zinc finger domain protein 2ATTF-I interacting peptide 5TTF-I-interacting protein 5transcription termination factor I-interacting protein 5 | cytoskeleton-associated protein 5colonic and hepatic tumor over-expressed gene proteincolonic and hepatic tumor overexpressed gene protein | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | Q9UIF9 | Q14008 | |
| Ensembl transtripts involved in fusion gene | ENST00000179765, ENST00000379441, ENST00000549884, ENST00000551812, ENST00000553222, | ENST00000312055, ENST00000354558, ENST00000415402, ENST00000529230, ENST00000532321, | |
| Fusion gene scores | * DoF score | 16 X 18 X 8=2304 | 12 X 11 X 5=660 |
| # samples | 20 | 13 | |
| ** MAII score | log2(20/2304*10)=-3.52606881166759 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(13/660*10)=-2.34395440121736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: BAZ2A [Title/Abstract] AND CKAP5 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | BAZ2A(56995496)-CKAP5(46801828), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | CKAP5 | GO:0090063 | positive regulation of microtubule nucleation | 26414402 |
| Fusion gene breakpoints across BAZ2A (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across CKAP5 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS5.0 | N/A | BI049504 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
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Fusion Gene ORF analysis for BAZ2A-CKAP5 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000179765 | ENST00000312055 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000179765 | ENST00000354558 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000179765 | ENST00000415402 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000179765 | ENST00000529230 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000379441 | ENST00000312055 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000379441 | ENST00000354558 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000379441 | ENST00000415402 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000379441 | ENST00000529230 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000549884 | ENST00000312055 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000549884 | ENST00000354558 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000549884 | ENST00000415402 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000549884 | ENST00000529230 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000551812 | ENST00000312055 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000551812 | ENST00000354558 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000551812 | ENST00000415402 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000551812 | ENST00000529230 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000553222 | ENST00000312055 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000553222 | ENST00000354558 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000553222 | ENST00000415402 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-3CDS | ENST00000553222 | ENST00000529230 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-intron | ENST00000179765 | ENST00000532321 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-intron | ENST00000379441 | ENST00000532321 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-intron | ENST00000549884 | ENST00000532321 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-intron | ENST00000551812 | ENST00000532321 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| intron-intron | ENST00000553222 | ENST00000532321 | BAZ2A | chr12 | 56995496 | + | CKAP5 | chr11 | 46801828 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for BAZ2A-CKAP5 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for BAZ2A-CKAP5 |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:56995496/:46801828) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| BAZ2A | CKAP5 |
| FUNCTION: Essential component of the NoRC (nucleolar remodeling complex) complex, a complex that mediates silencing of a fraction of rDNA by recruiting histone-modifying enzymes and DNA methyltransferases, leading to heterochromatin formation and transcriptional silencing. In the complex, it plays a central role by being recruited to rDNA and by targeting chromatin modifying enzymes such as HDAC1, leading to repress RNA polymerase I transcription. Recruited to rDNA via its interaction with TTF1 and its ability to recognize and bind histone H4 acetylated on 'Lys-16' (H4K16ac), leading to deacetylation of H4K5ac, H4K8ac, H4K12ac but not H4K16ac. Specifically binds pRNAs, 150-250 nucleotide RNAs that are complementary in sequence to the rDNA promoter; pRNA-binding is required for heterochromatin formation and rDNA silencing (By similarity). {ECO:0000250}. | FUNCTION: Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Acts as processive microtubule polymerase. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. In spindle formation protects kinetochore microtubules from depolymerization by KIF2C and has an essential role in centrosomal microtubule assembly independently of KIF2C activity. Contributes to centrosome integrity. Acts as component of the TACC3/ch-TOG/clathrin complex proposed to contribute to stabilization of kinetochore fibers of the mitotic spindle by acting as inter-microtubule bridge. The TACC3/ch-TOG/clathrin complex is required for the maintenance of kinetochore fiber tension (PubMed:23532825). Enhances the strength of NDC80 complex-mediated kinetochore-tip microtubule attachments (PubMed:27156448). {ECO:0000269|PubMed:12569123, ECO:0000269|PubMed:18809577, ECO:0000269|PubMed:21297582, ECO:0000269|PubMed:21646404, ECO:0000269|PubMed:23532825, ECO:0000269|PubMed:27156448, ECO:0000269|PubMed:9570755}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for BAZ2A-CKAP5 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
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Fusion Gene PPI Analysis for BAZ2A-CKAP5 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for BAZ2A-CKAP5 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for BAZ2A-CKAP5 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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