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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:UBA52-DPM1 (FusionGDB2 ID:95830)

Fusion Gene Summary for UBA52-DPM1

check button Fusion gene summary
Fusion gene informationFusion gene name: UBA52-DPM1
Fusion gene ID: 95830
HgeneTgene
Gene symbol

UBA52

DPM1

Gene ID

7311

8813

Gene nameubiquitin A-52 residue ribosomal protein fusion product 1dolichyl-phosphate mannosyltransferase subunit 1, catalytic
SynonymsCEP52|HUBCEP52|L40|RPL40CDGIE|MPDS
Cytomap

19p13.11

20q13.13

Type of geneprotein-codingprotein-coding
Descriptionubiquitin-60S ribosomal protein L40ubiquitin carboxyl extension protein 52ubiquitin-52 amino acid fusion proteinubiquitin-CEP52dolichol-phosphate mannosyltransferase subunit 1DPM synthase complex, catalytic subunitDPM synthase subunit 1MPD synthase subunit 1dolichol monophosphate mannose synthasedolichol-phosphate mannose synthase subunit 1dolichyl-phosphate beta-D-mannosyl
Modification date2020031320200313
UniProtAcc.

O60762

Ensembl transtripts involved in fusion geneENST00000442744, ENST00000430157, 
ENST00000595683, ENST00000597451, 
ENST00000599551, ENST00000595158, 
ENST00000596273, ENST00000596304, 
ENST00000598780, ENST00000599595, 
ENST00000371582, ENST00000371583, 
ENST00000371588, ENST00000466152, 
Fusion gene scores* DoF score30 X 21 X 5=31506 X 6 X 3=108
# samples 337
** MAII scorelog2(33/3150*10)=-3.25481389902883
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(7/108*10)=-0.625604485218502
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: UBA52 [Title/Abstract] AND DPM1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointUBA52(18686051)-DPM1(49560295), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneDPM1

GO:0006506

GPI anchor biosynthetic process

9535917|9724629|10835346

TgeneDPM1

GO:0019348

dolichol metabolic process

9535917|9724629

TgeneDPM1

GO:0035268

protein mannosylation

9535917

TgeneDPM1

GO:0035269

protein O-linked mannosylation

9535917


check buttonFusion gene breakpoints across UBA52 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across DPM1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/ABM013913UBA52chr19

18686051

+DPM1chr20

49560295

-


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Fusion Gene ORF analysis for UBA52-DPM1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-intronENST00000442744ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
3UTR-intronENST00000442744ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
3UTR-intronENST00000442744ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
3UTR-intronENST00000442744ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000430157ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000430157ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000430157ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000430157ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000595683ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000595683ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000595683ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000595683ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000597451ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000597451ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000597451ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000597451ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000599551ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000599551ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000599551ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
5CDS-intronENST00000599551ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000595158ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000595158ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000595158ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000595158ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000596273ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000596273ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000596273ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000596273ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000596304ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000596304ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000596304ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000596304ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000598780ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000598780ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000598780ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000598780ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000599595ENST00000371582UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000599595ENST00000371583UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000599595ENST00000371588UBA52chr19

18686051

+DPM1chr20

49560295

-
intron-intronENST00000599595ENST00000466152UBA52chr19

18686051

+DPM1chr20

49560295

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for UBA52-DPM1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for UBA52-DPM1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:18686051/:49560295)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.DPM1

O60762

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins; catalytic subunit of the dolichol-phosphate mannose (DPM) synthase complex.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for UBA52-DPM1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for UBA52-DPM1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for UBA52-DPM1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for UBA52-DPM1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource