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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:UBAP1-NFX1 (FusionGDB2 ID:95905)

Fusion Gene Summary for UBAP1-NFX1

check button Fusion gene summary
Fusion gene informationFusion gene name: UBAP1-NFX1
Fusion gene ID: 95905
HgeneTgene
Gene symbol

UBAP1

NFX1

Gene ID

51271

4799

Gene nameubiquitin associated protein 1nuclear transcription factor, X-box binding 1
SynonymsNAG20|SPG80|UAP|UBAP|UBAP-1NFX2|TEG-42|Tex42
Cytomap

9p13.3

9p13.3

Type of geneprotein-codingprotein-coding
Descriptionubiquitin-associated protein 1nasopharyngeal carcinoma-associated gene 20 proteintranscriptional repressor NF-X1nuclear transcription factor, X box-binding protein 1
Modification date2020031320200313
UniProtAcc.

ZNFX1

Ensembl transtripts involved in fusion geneENST00000543944, ENST00000545103, 
ENST00000297661, ENST00000379186, 
ENST00000536252, ENST00000540348, 
ENST00000359544, 		ENST00000463421, 
ENST00000318524, ENST00000379521, 
ENST00000379540, 
Fusion gene scores* DoF score16 X 12 X 7=134414 X 12 X 9=1512
# samples 1815
** MAII scorelog2(18/1344*10)=-2.90046432644909
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(15/1512*10)=-3.33342373372519
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: UBAP1 [Title/Abstract] AND NFX1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointUBAP1(34179238)-NFX1(33338508), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneNFX1

GO:0000122

negative regulation of transcription by RNA polymerase II

7964459

TgeneNFX1

GO:0051865

protein autoubiquitination

10500182


check buttonFusion gene breakpoints across UBAP1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across NFX1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-AC-A2BK-01AUBAP1chr9

34179238

+NFX1chr9

33338508

+


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Fusion Gene ORF analysis for UBAP1-NFX1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000543944ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
5CDS-intronENST00000545103ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000297661ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000297661ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000297661ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000379186ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000379186ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000379186ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000536252ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000536252ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000536252ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000540348ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000540348ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-3CDSENST00000540348ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-intronENST00000297661ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-intronENST00000379186ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-intronENST00000536252ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
5UTR-intronENST00000540348ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000543944ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000543944ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000543944ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000545103ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000545103ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
In-frameENST00000545103ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
intron-3CDSENST00000359544ENST00000318524UBAP1chr9

34179238

+NFX1chr9

33338508

+
intron-3CDSENST00000359544ENST00000379521UBAP1chr9

34179238

+NFX1chr9

33338508

+
intron-3CDSENST00000359544ENST00000379540UBAP1chr9

34179238

+NFX1chr9

33338508

+
intron-intronENST00000359544ENST00000463421UBAP1chr9

34179238

+NFX1chr9

33338508

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000545103UBAP1chr934179238+ENST00000379540NFX1chr933338508+2743236101563517
ENST00000545103UBAP1chr934179238+ENST00000379521NFX1chr933338508+1749236101275421
ENST00000545103UBAP1chr934179238+ENST00000318524NFX1chr933338508+168623610702230
ENST00000543944UBAP1chr934179238+ENST00000379540NFX1chr933338508+2743236101563517
ENST00000543944UBAP1chr934179238+ENST00000379521NFX1chr933338508+1749236101275421
ENST00000543944UBAP1chr934179238+ENST00000318524NFX1chr933338508+168623610702230

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000545103ENST00000379540UBAP1chr934179238+NFX1chr933338508+0.0063713180.9936287
ENST00000545103ENST00000379521UBAP1chr934179238+NFX1chr933338508+0.0196076310.9803924
ENST00000545103ENST00000318524UBAP1chr934179238+NFX1chr933338508+0.330293950.66970605
ENST00000543944ENST00000379540UBAP1chr934179238+NFX1chr933338508+0.0063713180.9936287
ENST00000543944ENST00000379521UBAP1chr934179238+NFX1chr933338508+0.0196076310.9803924
ENST00000543944ENST00000318524UBAP1chr934179238+NFX1chr933338508+0.330293950.66970605

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Fusion Genomic Features for UBAP1-NFX1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
UBAP1chr934179238+NFX1chr933338507+3.58E-070.99999964
UBAP1chr934179238+NFX1chr933338507+3.58E-070.99999964

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for UBAP1-NFX1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr9:34179238/chr9:33338508)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.NFX1

ZNFX1

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.1918

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneUBAP1chr9:34179238chr9:33338508ENST00000543944+1617_6375539.0DomainUMA
HgeneUBAP1chr9:34179238chr9:33338508ENST00000545103+1617_6375567.0DomainUMA
TgeneNFX1chr9:34179238chr9:33338508ENST0000031852410161084_1089678834.0Compositional biasNote=Poly-Pro
TgeneNFX1chr9:34179238chr9:33338508ENST0000037952110211084_10896781025.0Compositional biasNote=Poly-Pro
TgeneNFX1chr9:34179238chr9:33338508ENST0000037954010241084_10896781121.0Compositional biasNote=Poly-Pro
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016994_1062678834.0DomainR3H
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021994_10626781025.0DomainR3H
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024994_10626781121.0DomainR3H
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016694_713678834.0Zinc fingerNote=NF-X1-type 5
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016721_740678834.0Zinc fingerNote=NF-X1-type 6
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016832_854678834.0Zinc fingerNote=NF-X1-type 7
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016863_884678834.0Zinc fingerNote=NF-X1-type 8
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021694_7136781025.0Zinc fingerNote=NF-X1-type 5
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021721_7406781025.0Zinc fingerNote=NF-X1-type 6
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021832_8546781025.0Zinc fingerNote=NF-X1-type 7
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021863_8846781025.0Zinc fingerNote=NF-X1-type 8
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024694_7136781121.0Zinc fingerNote=NF-X1-type 5
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024721_7406781121.0Zinc fingerNote=NF-X1-type 6
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024832_8546781121.0Zinc fingerNote=NF-X1-type 7
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024863_8846781121.0Zinc fingerNote=NF-X1-type 8

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneUBAP1chr9:34179238chr9:33338508ENST00000297661+1717_630503.0DomainUMA
HgeneUBAP1chr9:34179238chr9:33338508ENST00000297661+17389_4300503.0DomainUBA 1
HgeneUBAP1chr9:34179238chr9:33338508ENST00000297661+17451_4980503.0DomainUBA 2
HgeneUBAP1chr9:34179238chr9:33338508ENST00000359544+1717_630503.0DomainUMA
HgeneUBAP1chr9:34179238chr9:33338508ENST00000359544+17389_4300503.0DomainUBA 1
HgeneUBAP1chr9:34179238chr9:33338508ENST00000359544+17451_4980503.0DomainUBA 2
HgeneUBAP1chr9:34179238chr9:33338508ENST00000379186+1617_630442.0DomainUMA
HgeneUBAP1chr9:34179238chr9:33338508ENST00000379186+16389_4300442.0DomainUBA 1
HgeneUBAP1chr9:34179238chr9:33338508ENST00000379186+16451_4980442.0DomainUBA 2
HgeneUBAP1chr9:34179238chr9:33338508ENST00000536252+1817_630503.0DomainUMA
HgeneUBAP1chr9:34179238chr9:33338508ENST00000536252+18389_4300503.0DomainUBA 1
HgeneUBAP1chr9:34179238chr9:33338508ENST00000536252+18451_4980503.0DomainUBA 2
HgeneUBAP1chr9:34179238chr9:33338508ENST00000540348+1817_630503.0DomainUMA
HgeneUBAP1chr9:34179238chr9:33338508ENST00000540348+18389_4300503.0DomainUBA 1
HgeneUBAP1chr9:34179238chr9:33338508ENST00000540348+18451_4980503.0DomainUBA 2
HgeneUBAP1chr9:34179238chr9:33338508ENST00000543944+16389_43075539.0DomainUBA 1
HgeneUBAP1chr9:34179238chr9:33338508ENST00000543944+16451_49875539.0DomainUBA 2
HgeneUBAP1chr9:34179238chr9:33338508ENST00000545103+16389_43075567.0DomainUBA 1
HgeneUBAP1chr9:34179238chr9:33338508ENST00000545103+16451_49875567.0DomainUBA 2
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016358_409678834.0Zinc fingerRING-type%3B atypical
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016453_471678834.0Zinc fingerNote=NF-X1-type 1
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016506_525678834.0Zinc fingerNote=NF-X1-type 2
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016567_586678834.0Zinc fingerNote=NF-X1-type 3
TgeneNFX1chr9:34179238chr9:33338508ENST000003185241016632_655678834.0Zinc fingerNote=NF-X1-type 4
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021358_4096781025.0Zinc fingerRING-type%3B atypical
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021453_4716781025.0Zinc fingerNote=NF-X1-type 1
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021506_5256781025.0Zinc fingerNote=NF-X1-type 2
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021567_5866781025.0Zinc fingerNote=NF-X1-type 3
TgeneNFX1chr9:34179238chr9:33338508ENST000003795211021632_6556781025.0Zinc fingerNote=NF-X1-type 4
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024358_4096781121.0Zinc fingerRING-type%3B atypical
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024453_4716781121.0Zinc fingerNote=NF-X1-type 1
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024506_5256781121.0Zinc fingerNote=NF-X1-type 2
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024567_5866781121.0Zinc fingerNote=NF-X1-type 3
TgeneNFX1chr9:34179238chr9:33338508ENST000003795401024632_6556781121.0Zinc fingerNote=NF-X1-type 4


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Fusion Gene Sequence for UBAP1-NFX1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>95905_95905_1_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000543944_NFX1_chr9_33338508_ENST00000318524_length(transcript)=1686nt_BP=236nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGCAGTC
CCACTACTGGGCGTCTACCCAGAAGAAAAGAAGTCATTATATGAAAAAGATACCTGCACACGCATGTTTATAGCAGCACAATTCACAATT
GCAAAAATGTGGAACCAGCCCAACTGCCCATCAGTCAACAAGTGGATAAAGAAATTGTGGTGTATCTATACGTACCATGGAATACTACTC
AGCCAGGAACGAAATAATGGCATTCACAGCAACCTGGATGGATTTGGAGACCATTATTCTAAGTGAAGTAACTCAGGAATGGAAAACCAA
ACATCGTATGTTCTCAATTATAAGAGGGAGCTAAGCTATGAGGACGCAAAGGCATGAGAATGATACAATGGACTTTGGGGACTCTGGGGA
AAGGACGGGAGGCGGGTGAGGGATAAAAAACTACACACTGGGTCCGAGCACGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCA
AGGCAGGTAGATTATGAGGTCGGGAGTTCGAAACCAGCCTGGCCAACAAGGTGAGACCCCCCCCATCTCTACTAAAATAATTAGCCGGGC
CTGGTGGCGCATCCCTGTAATCCCAGCTACTTTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACTCGGGAGGCGGATGTTGCAGTGA
GCCAATATCGCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCGAAAAAAAAAATAAATTTTAAAAACTACACATTGGG
TACAATGTACACTCCTCGGGTGATGGGTGCACCAAAATCTCAAAAATCACTACTAAGGAACTTATCCATGTAACCAAACACCACCTGTTC
CCCAAGAACTATTGAAATAAGAAAAAAGAAAAAAAAAAAATCACTGATTGCAGGTCACCCTAACAGATATAATAATGAAAAAGTCTGAGA
TGTTGCGAGAATTACCAAAATGTGATGCAGACACGAAATGAGCATGTGCTGTTGGAAAAGTGGAACAGATAGACTTGCTGGAGACAGGGT

>95905_95905_1_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000543944_NFX1_chr9_33338508_ENST00000318524_length(amino acids)=230AA_BP=54
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY

--------------------------------------------------------------
>95905_95905_2_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000543944_NFX1_chr9_33338508_ENST00000379521_length(transcript)=1749nt_BP=236nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCG
GAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACT
CTGTCACAAAGGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACC
CTGCCATACCAGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGAT
TTGCTCTGAAGCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGA
GATCAGCAAGTTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATT
AGCAGAGGCATTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGC
CAGGAAGGACTTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGTTGAAGTCGAAACATCCCA
CTGGACATTTCTCTAAGGCCAGCTTGATGAAAAAAAAAAAGCAATCAAGTCCTGGAAACACTTTCAACCTAGAGTAGTTGTAGGAAAAAG
TCACAACTTCTTTGAGGATCCTTATCTTTCTCAAAACACAGCCATTATAACATCTGTGGAAGCCTGTCCTGGTTCAGGACAGTTGACTGC
AGAAAAGATCTACAGTCGGCTGGGCACAGTGTCTCATGCCTGTAATGCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACTTGAGGTCA
GGAGTTCTAGATCAGCTTGGCCAACATGACGAAACCCTGTCTCTACTAAAAATATAAAAATTAGCTGGGTGTGGTGGCGGGCACCTGTTA
TTCCAGCTACTTGCAAGGCTTAGGCAGGAGAATTCCTTGAACCCGGGAGGCAGAGGTTGCTGTGAGCTGAGATTCTGCCACTGCACTCCA

>95905_95905_2_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000543944_NFX1_chr9_33338508_ENST00000379521_length(amino acids)=421AA_BP=54
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY
HSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLVDEPCKQPCTTPRADCGHPCMAPCHT
SSPCPVTACKAKVELQCECGRRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEA

--------------------------------------------------------------
>95905_95905_3_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000543944_NFX1_chr9_33338508_ENST00000379540_length(transcript)=2743nt_BP=236nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCG
GAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACT
CTGTCACAAAGGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACC
CTGCCATACCAGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGAT
TTGCTCTGAAGCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGA
GATCAGCAAGTTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATT
AGCAGAGGCATTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGC
CAGGAAGGACTTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGGAAAGAATAGTAAGAAAAG
CCACAGCTTCCCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTTGGCCCAAGTTTATGGCCTGGAGAGCGTGAGCTATGACAG
TGAACCGAAGCGCAATGTGGTGGTCACTGCCATCAGGGGGAAGTCCGTTTGTCCTCCTACCACGCTGACAGGTGTGCTTGAAAGGGAAAT
GCAGGCACGGCCTCCACCACCGATTCCTCATCACAGACATCAGTCAGACAAGAATCCTGGGAGCAGTAATTTACAGAAAATAACCAAGGA
GCCAATAATTGACTATTTTGACGTCCAGGACTAAGAAGATCATGATGCACTTAGATAAAAGAATGATTAGGTATAGTGGAGACTTATTTG
CCAGCAGATAAATCATGCCCGTTCCCCTCTGCCTGGCAGAATCACAGTCTCACATACTGTCTTGTACTGACACATCCAAAGCATGAGTGT
GTCAGAAATCCCTTGTCTATTCCTGTCTGTATAAAGTGTTTCATTATGACCAGATCTCTGATTGTATGGTCACTAGGTATGCAATCACGC
ATTCAAAGAGGCTCTTTACACCATCACTGTGATTGCTCTGAGAGTTGAGGGACTATTGGGCTTTATTTGGACAAACCAAACTTTTAGCCT
GAAACCAACTTTATGCCACTAAGTCATAGCCTCAGTTGTCCCAGTTATTTGTCCTCCTGAAAATGCCTGAAACATCAGACAGACATTGCT
TGCTTTACCCAAACTGATCAAAATCTTTAGGAGCACAAATGAATTTTTTAGTCTGAAATACCAAATAATGAATTGGTATACCATATCCGG
AATCACACATGTTATCTTAAACCCAGCCATCATACCTAAGTCTTTTGCCAAAACCTCTCATAGGTATATCTAGCTGAACTTATTTTGGCA
TTTTCAATGTGATCAGTTCTAGACCTAGAAGGGGGTCAGGCTGCTTTACAGAATTCTATTTCCTTAAGTCCCTGGCACTTCTCATACCAC
ATCACTGAACCTGTTCAGTAACAATCAGTTTGGCCGTCCCCCATGATGGTAGGAAATATAGAGAGCAAGTTCTTCTGCCAGGGTCACACT
GTGGTCTCTGAACTGACCAGTATATCCCTAACTCCTCTTTGATAGAGAAAGAGTCTCAAATGGACAACTGTCCTGTGTTGCTTTCCCTAG
GCCTTCAGCAGCCTATTGGCTCTCCCTGCCTCTGAGCTCTGGACTCTGTTTGAATATTCCAAGTAGTATATGGACAGTCCAGGGCTTATG
CCCAGCAGCCCACTGGAGGCATTCTTCAGGCTCCTTTAAGGCAGGTGCATTGATAGTTCCATTAGTGTGACCCTTGCATTGGCACCCCTC
CAGCCTGGAGGCCAGGCTTCCAGCAACTTCCTTCTGCCCTAGAGCAAGCCATGAGCCCCAGAGCAGTAGCAGGAGACTTGAGAAGTAGAG

>95905_95905_3_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000543944_NFX1_chr9_33338508_ENST00000379540_length(amino acids)=517AA_BP=54
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY
HSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLVDEPCKQPCTTPRADCGHPCMAPCHT
SSPCPVTACKAKVELQCECGRRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEA
FHISEDSDPFNIRSSGSKFSDSLKEDARKDLKFVSDVEKEMETLVEAVNKGKNSKKSHSFPPMNRDHRRIIHDLAQVYGLESVSYDSEPK

--------------------------------------------------------------
>95905_95905_4_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000545103_NFX1_chr9_33338508_ENST00000318524_length(transcript)=1686nt_BP=236nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGCAGTC
CCACTACTGGGCGTCTACCCAGAAGAAAAGAAGTCATTATATGAAAAAGATACCTGCACACGCATGTTTATAGCAGCACAATTCACAATT
GCAAAAATGTGGAACCAGCCCAACTGCCCATCAGTCAACAAGTGGATAAAGAAATTGTGGTGTATCTATACGTACCATGGAATACTACTC
AGCCAGGAACGAAATAATGGCATTCACAGCAACCTGGATGGATTTGGAGACCATTATTCTAAGTGAAGTAACTCAGGAATGGAAAACCAA
ACATCGTATGTTCTCAATTATAAGAGGGAGCTAAGCTATGAGGACGCAAAGGCATGAGAATGATACAATGGACTTTGGGGACTCTGGGGA
AAGGACGGGAGGCGGGTGAGGGATAAAAAACTACACACTGGGTCCGAGCACGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCA
AGGCAGGTAGATTATGAGGTCGGGAGTTCGAAACCAGCCTGGCCAACAAGGTGAGACCCCCCCCATCTCTACTAAAATAATTAGCCGGGC
CTGGTGGCGCATCCCTGTAATCCCAGCTACTTTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACTCGGGAGGCGGATGTTGCAGTGA
GCCAATATCGCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCGAAAAAAAAAATAAATTTTAAAAACTACACATTGGG
TACAATGTACACTCCTCGGGTGATGGGTGCACCAAAATCTCAAAAATCACTACTAAGGAACTTATCCATGTAACCAAACACCACCTGTTC
CCCAAGAACTATTGAAATAAGAAAAAAGAAAAAAAAAAAATCACTGATTGCAGGTCACCCTAACAGATATAATAATGAAAAAGTCTGAGA
TGTTGCGAGAATTACCAAAATGTGATGCAGACACGAAATGAGCATGTGCTGTTGGAAAAGTGGAACAGATAGACTTGCTGGAGACAGGGT

>95905_95905_4_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000545103_NFX1_chr9_33338508_ENST00000318524_length(amino acids)=230AA_BP=54
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY

--------------------------------------------------------------
>95905_95905_5_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000545103_NFX1_chr9_33338508_ENST00000379521_length(transcript)=1749nt_BP=236nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCG
GAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACT
CTGTCACAAAGGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACC
CTGCCATACCAGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGAT
TTGCTCTGAAGCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGA
GATCAGCAAGTTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATT
AGCAGAGGCATTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGC
CAGGAAGGACTTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGTTGAAGTCGAAACATCCCA
CTGGACATTTCTCTAAGGCCAGCTTGATGAAAAAAAAAAAGCAATCAAGTCCTGGAAACACTTTCAACCTAGAGTAGTTGTAGGAAAAAG
TCACAACTTCTTTGAGGATCCTTATCTTTCTCAAAACACAGCCATTATAACATCTGTGGAAGCCTGTCCTGGTTCAGGACAGTTGACTGC
AGAAAAGATCTACAGTCGGCTGGGCACAGTGTCTCATGCCTGTAATGCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACTTGAGGTCA
GGAGTTCTAGATCAGCTTGGCCAACATGACGAAACCCTGTCTCTACTAAAAATATAAAAATTAGCTGGGTGTGGTGGCGGGCACCTGTTA
TTCCAGCTACTTGCAAGGCTTAGGCAGGAGAATTCCTTGAACCCGGGAGGCAGAGGTTGCTGTGAGCTGAGATTCTGCCACTGCACTCCA

>95905_95905_5_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000545103_NFX1_chr9_33338508_ENST00000379521_length(amino acids)=421AA_BP=54
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY
HSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLVDEPCKQPCTTPRADCGHPCMAPCHT
SSPCPVTACKAKVELQCECGRRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEA

--------------------------------------------------------------
>95905_95905_6_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000545103_NFX1_chr9_33338508_ENST00000379540_length(transcript)=2743nt_BP=236nt
AGACGCCCAAATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGA
CGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAG
GCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAGATGCTACATTTATGTGTGACAAGCGGTGTAACAA
GAAACGGTTGTGTGGACGGCATAAATGTAATGAGATATGCTGTGTGGATAAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCG
TTGTGGCCTTCATAGGTGTGAAGAACCTTGTCATCGTGGAAACTGCCAGACATGCTGGCAAGCCAGTTTTGATGAATTAACCTGCCATTG
TGGTGCATCAGTGATTTACCCTCCAGTTCCCTGTGGTACTAGGCCCCCTGAATGTACCCAAACCTGCGCTAGAGTCCATGAGTGTGACCA
TCCAGTATATCATTCTTGTCATAGTGAGGAGAAGTGTCCCCCTTGCACTTTCCTAACTCAGAAGTGGTGCATGGGCAAGCATGAGTTTCG
GAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGGATTACCCTGCAGTGCCACGCTACCATGTGGGATGCACAAATGTCAGAGACT
CTGTCACAAAGGGGAGTGTCTTGTGGATGAGCCCTGCAAGCAGCCCTGCACCACCCCCAGAGCTGACTGTGGTCACCCGTGTATGGCACC
CTGCCATACCAGCTCACCCTGCCCTGTGACTGCTTGTAAAGCTAAGGTAGAGCTACAGTGTGAATGTGGACGAAGAAAAGAGATGGTGAT
TTGCTCTGAAGCATCTAGTACTTATCAAAGAATAGCTGCAATCTCCATGGCCTCTAAGATAACAGACATGCAGCTTGGAGGTTCAGTGGA
GATCAGCAAGTTAATTACCAAAAAGGAAGTTCATCAAGCCAGGCTGGAGTGTGATGAGGAGTGTTCAGCCTTGGAAAGGAAAAAGAGATT
AGCAGAGGCATTTCATATCAGTGAGGATTCTGATCCTTTCAATATACGTTCTTCAGGGTCAAAATTCAGTGATAGTTTGAAAGAAGATGC
CAGGAAGGACTTAAAGTTTGTCAGTGACGTTGAGAAGGAAATGGAAACCCTCGTGGAGGCCGTGAATAAGGGAAAGAATAGTAAGAAAAG
CCACAGCTTCCCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTTGGCCCAAGTTTATGGCCTGGAGAGCGTGAGCTATGACAG
TGAACCGAAGCGCAATGTGGTGGTCACTGCCATCAGGGGGAAGTCCGTTTGTCCTCCTACCACGCTGACAGGTGTGCTTGAAAGGGAAAT
GCAGGCACGGCCTCCACCACCGATTCCTCATCACAGACATCAGTCAGACAAGAATCCTGGGAGCAGTAATTTACAGAAAATAACCAAGGA
GCCAATAATTGACTATTTTGACGTCCAGGACTAAGAAGATCATGATGCACTTAGATAAAAGAATGATTAGGTATAGTGGAGACTTATTTG
CCAGCAGATAAATCATGCCCGTTCCCCTCTGCCTGGCAGAATCACAGTCTCACATACTGTCTTGTACTGACACATCCAAAGCATGAGTGT
GTCAGAAATCCCTTGTCTATTCCTGTCTGTATAAAGTGTTTCATTATGACCAGATCTCTGATTGTATGGTCACTAGGTATGCAATCACGC
ATTCAAAGAGGCTCTTTACACCATCACTGTGATTGCTCTGAGAGTTGAGGGACTATTGGGCTTTATTTGGACAAACCAAACTTTTAGCCT
GAAACCAACTTTATGCCACTAAGTCATAGCCTCAGTTGTCCCAGTTATTTGTCCTCCTGAAAATGCCTGAAACATCAGACAGACATTGCT
TGCTTTACCCAAACTGATCAAAATCTTTAGGAGCACAAATGAATTTTTTAGTCTGAAATACCAAATAATGAATTGGTATACCATATCCGG
AATCACACATGTTATCTTAAACCCAGCCATCATACCTAAGTCTTTTGCCAAAACCTCTCATAGGTATATCTAGCTGAACTTATTTTGGCA
TTTTCAATGTGATCAGTTCTAGACCTAGAAGGGGGTCAGGCTGCTTTACAGAATTCTATTTCCTTAAGTCCCTGGCACTTCTCATACCAC
ATCACTGAACCTGTTCAGTAACAATCAGTTTGGCCGTCCCCCATGATGGTAGGAAATATAGAGAGCAAGTTCTTCTGCCAGGGTCACACT
GTGGTCTCTGAACTGACCAGTATATCCCTAACTCCTCTTTGATAGAGAAAGAGTCTCAAATGGACAACTGTCCTGTGTTGCTTTCCCTAG
GCCTTCAGCAGCCTATTGGCTCTCCCTGCCTCTGAGCTCTGGACTCTGTTTGAATATTCCAAGTAGTATATGGACAGTCCAGGGCTTATG
CCCAGCAGCCCACTGGAGGCATTCTTCAGGCTCCTTTAAGGCAGGTGCATTGATAGTTCCATTAGTGTGACCCTTGCATTGGCACCCCTC
CAGCCTGGAGGCCAGGCTTCCAGCAACTTCCTTCTGCCCTAGAGCAAGCCATGAGCCCCAGAGCAGTAGCAGGAGACTTGAGAAGTAGAG

>95905_95905_6_UBAP1-NFX1_UBAP1_chr9_34179238_ENST00000545103_NFX1_chr9_33338508_ENST00000379540_length(amino acids)=517AA_BP=54
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHSDATFMCDKRCNKKRL
CGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVY
HSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLVDEPCKQPCTTPRADCGHPCMAPCHT
SSPCPVTACKAKVELQCECGRRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEA
FHISEDSDPFNIRSSGSKFSDSLKEDARKDLKFVSDVEKEMETLVEAVNKGKNSKKSHSFPPMNRDHRRIIHDLAQVYGLESVSYDSEPK

--------------------------------------------------------------

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Fusion Gene PPI Analysis for UBAP1-NFX1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneUBAP1chr9:34179238chr9:33338508ENST00000297661+171_950503.0ESCRT-I
HgeneUBAP1chr9:34179238chr9:33338508ENST00000359544+171_950503.0ESCRT-I
HgeneUBAP1chr9:34179238chr9:33338508ENST00000379186+161_950442.0ESCRT-I
HgeneUBAP1chr9:34179238chr9:33338508ENST00000536252+181_950503.0ESCRT-I
HgeneUBAP1chr9:34179238chr9:33338508ENST00000540348+181_950503.0ESCRT-I
HgeneUBAP1chr9:34179238chr9:33338508ENST00000543944+161_9575.33333333333333539.0ESCRT-I
HgeneUBAP1chr9:34179238chr9:33338508ENST00000545103+161_9575.33333333333333567.0ESCRT-I
HgeneUBAP1chr9:34179238chr9:33338508ENST00000297661+17260_2900503.0PTPN23
HgeneUBAP1chr9:34179238chr9:33338508ENST00000359544+17260_2900503.0PTPN23
HgeneUBAP1chr9:34179238chr9:33338508ENST00000379186+16260_2900442.0PTPN23
HgeneUBAP1chr9:34179238chr9:33338508ENST00000536252+18260_2900503.0PTPN23
HgeneUBAP1chr9:34179238chr9:33338508ENST00000540348+18260_2900503.0PTPN23
HgeneUBAP1chr9:34179238chr9:33338508ENST00000543944+16260_29075.33333333333333539.0PTPN23
HgeneUBAP1chr9:34179238chr9:33338508ENST00000545103+16260_29075.33333333333333567.0PTPN23
TgeneNFX1chr9:34179238chr9:33338508ENST0000031852410169_26678.3333333333334834.0PABPC1 and PABC4
TgeneNFX1chr9:34179238chr9:33338508ENST0000037952110219_26678.33333333333341025.0PABPC1 and PABC4
TgeneNFX1chr9:34179238chr9:33338508ENST0000037954010249_26678.33333333333341121.0PABPC1 and PABC4


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for UBAP1-NFX1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for UBAP1-NFX1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource