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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:UBTF-ETV4 (FusionGDB2 ID:96494)

Fusion Gene Summary for UBTF-ETV4

check button Fusion gene summary
Fusion gene informationFusion gene name: UBTF-ETV4
Fusion gene ID: 96494
HgeneTgene
Gene symbol

UBTF

ETV4

Gene ID

7343

2118

Gene nameupstream binding transcription factorETS variant transcription factor 4
SynonymsCONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2E1A-F|E1AF|PEA3|PEAS3
Cytomap

17q21.31

17q21.31

Type of geneprotein-codingprotein-coding
Descriptionnucleolar transcription factor 190-kDa nucleolus organizer region autoantigenautoantigen NOR-90upstream binding transcription factor, RNA polymerase IETS translocation variant 4ETS variant 4EWS protein/E1A enhancer binding protein chimeraadenovirus E1A enhancer-binding proteinets variant gene 4 (E1A enhancer-binding protein, E1AF)polyomavirus enhancer activator 3 homolog
Modification date2020031320200313
UniProtAcc.

P43268

Ensembl transtripts involved in fusion geneENST00000302904, ENST00000343638, 
ENST00000393606, ENST00000436088, 
ENST00000526094, ENST00000527034, 
ENST00000529383, ENST00000533177, 
ENST00000537550, 		ENST00000319349, 
ENST00000393664, ENST00000538265, 
ENST00000545089, ENST00000545954, 
ENST00000586826, ENST00000591713, 
Fusion gene scores* DoF score11 X 12 X 8=105614 X 28 X 6=2352
# samples 1324
** MAII scorelog2(13/1056*10)=-3.02202630633
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(24/2352*10)=-3.29278174922785
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: UBTF [Title/Abstract] AND ETV4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneUBTF

GO:1902659

regulation of glucose mediated signaling pathway

22368283

TgeneETV4

GO:0045944

positive regulation of transcription by RNA polymerase II

24983502


check buttonFusion gene breakpoints across UBTF (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across ETV4 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerKB4..UBTFchr17

42295664

-ETV4chr17

42295664

-
ChimerKB4..UBTFchr17

42297041

-ETV4chr17

42297041

-


Top

Fusion Gene ORF analysis for UBTF-ETV4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000302904ENST00000319349UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000302904ENST00000319349UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000302904ENST00000393664UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000302904ENST00000393664UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000302904ENST00000538265UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000302904ENST00000538265UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000302904ENST00000545089UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000302904ENST00000545089UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000302904ENST00000545954UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000302904ENST00000545954UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000302904ENST00000586826UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000302904ENST00000586826UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000302904ENST00000591713UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000302904ENST00000591713UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000343638ENST00000319349UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000343638ENST00000319349UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000343638ENST00000393664UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000343638ENST00000393664UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000343638ENST00000538265UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000343638ENST00000538265UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000343638ENST00000545089UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000343638ENST00000545089UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000343638ENST00000545954UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000343638ENST00000545954UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000343638ENST00000586826UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000343638ENST00000586826UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000343638ENST00000591713UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000343638ENST00000591713UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000393606ENST00000319349UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000393606ENST00000319349UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000393606ENST00000393664UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000393606ENST00000393664UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000393606ENST00000538265UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000393606ENST00000538265UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000393606ENST00000545089UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000393606ENST00000545089UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000393606ENST00000545954UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000393606ENST00000545954UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000393606ENST00000586826UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000393606ENST00000586826UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000393606ENST00000591713UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000393606ENST00000591713UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000436088ENST00000319349UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000436088ENST00000319349UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000436088ENST00000393664UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000436088ENST00000393664UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000436088ENST00000538265UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000436088ENST00000538265UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000436088ENST00000545089UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000436088ENST00000545089UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000436088ENST00000545954UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000436088ENST00000545954UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000436088ENST00000586826UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000436088ENST00000586826UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000436088ENST00000591713UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000436088ENST00000591713UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000526094ENST00000319349UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000526094ENST00000319349UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000526094ENST00000393664UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000526094ENST00000393664UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000526094ENST00000538265UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000526094ENST00000538265UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000526094ENST00000545089UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000526094ENST00000545089UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000526094ENST00000545954UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000526094ENST00000545954UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000526094ENST00000586826UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000526094ENST00000586826UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000526094ENST00000591713UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000526094ENST00000591713UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000527034ENST00000319349UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000527034ENST00000319349UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000527034ENST00000393664UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000527034ENST00000393664UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000527034ENST00000538265UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000527034ENST00000538265UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000527034ENST00000545089UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000527034ENST00000545089UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000527034ENST00000545954UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000527034ENST00000545954UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000527034ENST00000586826UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000527034ENST00000586826UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000527034ENST00000591713UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000527034ENST00000591713UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000529383ENST00000319349UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000529383ENST00000319349UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000529383ENST00000393664UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000529383ENST00000393664UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000529383ENST00000538265UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000529383ENST00000538265UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000529383ENST00000545089UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000529383ENST00000545089UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000529383ENST00000545954UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000529383ENST00000545954UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000529383ENST00000586826UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000529383ENST00000586826UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000529383ENST00000591713UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000529383ENST00000591713UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000533177ENST00000319349UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000533177ENST00000319349UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000533177ENST00000393664UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000533177ENST00000393664UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000533177ENST00000538265UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000533177ENST00000538265UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000533177ENST00000545089UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000533177ENST00000545089UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000533177ENST00000545954UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000533177ENST00000545954UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000533177ENST00000586826UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000533177ENST00000586826UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000533177ENST00000591713UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000533177ENST00000591713UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000537550ENST00000319349UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000537550ENST00000319349UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000537550ENST00000393664UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000537550ENST00000393664UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000537550ENST00000538265UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000537550ENST00000538265UBTFchr17

42297041

-ETV4chr17

42297041

-
intron-intronENST00000537550ENST00000545089UBTFchr17

42295664

-ETV4chr17

42295664

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intron-intronENST00000537550ENST00000545089UBTFchr17

42297041

-ETV4chr17

42297041

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intron-intronENST00000537550ENST00000545954UBTFchr17

42295664

-ETV4chr17

42295664

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intron-intronENST00000537550ENST00000545954UBTFchr17

42297041

-ETV4chr17

42297041

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intron-intronENST00000537550ENST00000586826UBTFchr17

42295664

-ETV4chr17

42295664

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intron-intronENST00000537550ENST00000586826UBTFchr17

42297041

-ETV4chr17

42297041

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intron-intronENST00000537550ENST00000591713UBTFchr17

42295664

-ETV4chr17

42295664

-
intron-intronENST00000537550ENST00000591713UBTFchr17

42297041

-ETV4chr17

42297041

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for UBTF-ETV4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for UBTF-ETV4


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:/:)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.ETV4

P43268

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator (PubMed:19307308, PubMed:31552090). May play a role in keratinocyte differentiation (PubMed:31552090). {ECO:0000269|PubMed:19307308, ECO:0000269|PubMed:31552090}.; FUNCTION: (Microbial infection) Binds to the enhancer of the adenovirus E1A gene and acts as a transcriptional activator; the core-binding sequence is 5'-[AC]GGA[AT]GT-3'. {ECO:0000269|PubMed:8441666}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for UBTF-ETV4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for UBTF-ETV4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for UBTF-ETV4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for UBTF-ETV4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource