FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:UNC13B-TAF7L (FusionGDB2 ID:96810)

Fusion Gene Summary for UNC13B-TAF7L

check button Fusion gene summary
Fusion gene informationFusion gene name: UNC13B-TAF7L
Fusion gene ID: 96810
HgeneTgene
Gene symbol

UNC13B

TAF7L

Gene ID

10497

54457

Gene nameunc-13 homolog BTATA-box binding protein associated factor 7 like
SynonymsMUNC13|UNC13|Unc13h2|munc13-2CT40|TAF2Q
Cytomap

9p13.3

Xq22.1

Type of geneprotein-codingprotein-coding
Descriptionprotein unc-13 homolog Bhomolog of rat Munc13 (diacylglycerol-binding)unc-13-liketranscription initiation factor TFIID subunit 7-likeRNA polymerase II TBP-associated factor subunit QTAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDaTATA box-binding protein-associated factor 50 kDaTBP-associated fa
Modification date2020032920200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000378495, ENST00000378496, 
ENST00000396787, ENST00000481299, 
ENST00000324762, ENST00000356784, 
ENST00000372907, ENST00000372905, 
Fusion gene scores* DoF score11 X 8 X 6=5282 X 2 X 2=8
# samples 112
** MAII scorelog2(11/528*10)=-2.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/8*10)=1.32192809488736
Context

PubMed: UNC13B [Title/Abstract] AND TAF7L [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointUNC13B(35162302)-TAF7L(100524225), # samples:3
Anticipated loss of major functional domain due to fusion event.UNC13B-TAF7L seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneUNC13B

GO:0043065

positive regulation of apoptotic process

10233166

HgeneUNC13B

GO:0050714

positive regulation of protein secretion

19641095

HgeneUNC13B

GO:0060478

acrosomal vesicle exocytosis

22248876

HgeneUNC13B

GO:0071333

cellular response to glucose stimulus

19641095


check buttonFusion gene breakpoints across UNC13B (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across TAF7L (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LUADTCGA-05-4382-01AUNC13Bchr9

35162302

-TAF7LchrX

100524225

-
ChimerDB4LUADTCGA-05-4382-01AUNC13Bchr9

35162302

+TAF7LchrX

100524225

-


Top

Fusion Gene ORF analysis for UNC13B-TAF7L

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000378495ENST00000324762UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
Frame-shiftENST00000378495ENST00000356784UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
Frame-shiftENST00000378495ENST00000372907UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
Frame-shiftENST00000378496ENST00000324762UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
Frame-shiftENST00000378496ENST00000356784UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
Frame-shiftENST00000378496ENST00000372907UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
Frame-shiftENST00000396787ENST00000324762UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
Frame-shiftENST00000396787ENST00000356784UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
Frame-shiftENST00000396787ENST00000372907UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
In-frameENST00000378495ENST00000372905UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
In-frameENST00000378496ENST00000372905UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
In-frameENST00000396787ENST00000372905UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
intron-3CDSENST00000481299ENST00000324762UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
intron-3CDSENST00000481299ENST00000356784UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
intron-3CDSENST00000481299ENST00000372905UNC13Bchr9

35162302

+TAF7LchrX

100524225

-
intron-3CDSENST00000481299ENST00000372907UNC13Bchr9

35162302

+TAF7LchrX

100524225

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000396787UNC13Bchr935162302+ENST00000372905TAF7LchrX100524225-12883042602179
ENST00000378495UNC13Bchr935162302+ENST00000372905TAF7LchrX100524225-122824415338978
ENST00000378496UNC13Bchr935162302+ENST00000372905TAF7LchrX100524225-118620211134778

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000396787ENST00000372905UNC13Bchr935162302+TAF7LchrX100524225-0.756212950.24378705
ENST00000378495ENST00000372905UNC13Bchr935162302+TAF7LchrX100524225-0.528561650.47143835
ENST00000378496ENST00000372905UNC13Bchr935162302+TAF7LchrX100524225-0.44380440.55619556

Top

Fusion Genomic Features for UNC13B-TAF7L


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for UNC13B-TAF7L


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr9:35162302/chrX:100524225)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneTAF7Lchr9:35162302chrX:100524225ENST00000324762911342_462288303.0Coiled coilOntology_term=ECO:0000255
TgeneTAF7Lchr9:35162302chrX:100524225ENST000003729051012342_462288303.0Coiled coilOntology_term=ECO:0000255
TgeneTAF7Lchr9:35162302chrX:100524225ENST00000324762911336_377288303.0Compositional biasNote=Glu-rich
TgeneTAF7Lchr9:35162302chrX:100524225ENST000003729051012336_377288303.0Compositional biasNote=Glu-rich

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneUNC13Bchr9:35162302chrX:100524225ENST00000378495+1391172_120271592.0Coiled coilOntology_term=ECO:0000255
HgeneUNC13Bchr9:35162302chrX:100524225ENST00000378495+1391013_115671592.0DomainMHD1
HgeneUNC13Bchr9:35162302chrX:100524225ENST00000378495+1391263_140571592.0DomainMHD2
HgeneUNC13Bchr9:35162302chrX:100524225ENST00000378495+1391419_154671592.0DomainC2 3
HgeneUNC13Bchr9:35162302chrX:100524225ENST00000378495+139583_70771592.0DomainC2 2
HgeneUNC13Bchr9:35162302chrX:100524225ENST00000378495+139477_52771592.0Zinc fingerPhorbol-ester/DAG-type
TgeneTAF7Lchr9:35162302chrX:100524225ENST000003567841113342_462362377.0Coiled coilOntology_term=ECO:0000255
TgeneTAF7Lchr9:35162302chrX:100524225ENST000003729071113342_462448463.0Coiled coilOntology_term=ECO:0000255
TgeneTAF7Lchr9:35162302chrX:100524225ENST000003567841113336_377362377.0Compositional biasNote=Glu-rich
TgeneTAF7Lchr9:35162302chrX:100524225ENST000003729071113336_377448463.0Compositional biasNote=Glu-rich


Top

Fusion Gene Sequence for UNC13B-TAF7L


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>96810_96810_1_UNC13B-TAF7L_UNC13B_chr9_35162302_ENST00000378495_TAF7L_chrX_100524225_ENST00000372905_length(transcript)=1228nt_BP=244nt
CCCAGCCTGCCGGCCGGTACTCACCGCTACCCGGAGTTCGCTCAGACGGTGAGATTTGGGGCGGGTCCGAGGCAGCGGCGGGACGCTACC
TGCGACCGGGACCATGAGGAGCTGCCAGACCCGTGGGGCCGGTAACGAGAGCAGTCGCGGCACCTGCTGAGAGGAAAGAGGGAGCGGTCC
GGCGCGGCTGGGGCGCGGCAGAGGCTTGCCCGATCCTCGGCCATGTCACTGCTCTGCGTGCGCGCTCATTTCCCTACAGGAACAGTTGCA
GCGTTTTCTGAAGAAGTGAGGAGAGCCATTGGCGTGGCCCACAAACCTTGGATTCACCATCCAGACTGCAGATTGGATGAAACTGTGCAC
GTTTTTGTCCCTTCAGTTGCCTTATGTTGAATCAGTTATATTTATCTGTACCTTCTTTGCTACTTAAAATATGCTCACAGTTTGTAGTCA
TGTAGAAAAGGCCAGTATAAAAATGTAGTAGACTTAAAGACCCCACTCGACCATGAGACTTTCTCTTTGTCAATTTGGGAATTATTATTA
TTAATTTAGAAATGGGGTCTTGTTATGTTGCCCAGGCTGAATTCAGACTCCTGGGCTTAAGGGATCCTTCCGCCTCAGCCTCCTGAGTAG
CTGGGACTACAGTTGTGCACCACCACACCAAACAAGAATTGATTATATTGCTTCTGTGCTATGGTACCAGCAGATTATTCAGCCATGCTT
CTAAAGGCAGTCTAGCCTAGAGGCCGTACAGCTGTTTGGTTTGCATATGTTTTAGCTTTTCTTTTGGTTTTTAGTATTTCCTAAAACATA
GGGGAAAAAACGAGGTCATTTCTACTAAGCACTAGGACCTGCCATAGTGAGTTTAAGTGCCTACCTTGCAGCAGTTAATACTAGATTGTG
TTCTGTCTCTGTTCAGGTAACAGGACTGCATTCCTGCTCAAGGATGATTCCTTGCTGCTGCTTATGTTCTGTTGTTTTTAGGATGGAGCT
GGTTGTTATTCACCAACTAAGGGAACAGTTAGAGCAGAGATGAAGAAATTATGAACTGTTATCCTTATTCTGAGCCTTCTCCTCCTAACC
CTCATCAGTTAAGGTTAGGAAGAACAAGATGCCATAATGCCTATGAAGACTTCTTTAACAATCTTGTTTGGGTTTTTTTCTAGGTATATT

>96810_96810_1_UNC13B-TAF7L_UNC13B_chr9_35162302_ENST00000378495_TAF7L_chrX_100524225_ENST00000372905_length(amino acids)=78AA_BP=30

--------------------------------------------------------------
>96810_96810_2_UNC13B-TAF7L_UNC13B_chr9_35162302_ENST00000378496_TAF7L_chrX_100524225_ENST00000372905_length(transcript)=1186nt_BP=202nt
CAGACGGTGAGATTTGGGGCGGGTCCGAGGCAGCGGCGGGACGCTACCTGCGACCGGGACCATGAGGAGCTGCCAGACCCGTGGGGCCGG
TAACGAGAGCAGTCGCGGCACCTGCTGAGAGGAAAGAGGGAGCGGTCCGGCGCGGCTGGGGCGCGGCAGAGGCTTGCCCGATCCTCGGCC
ATGTCACTGCTCTGCGTGCGCGCTCATTTCCCTACAGGAACAGTTGCAGCGTTTTCTGAAGAAGTGAGGAGAGCCATTGGCGTGGCCCAC
AAACCTTGGATTCACCATCCAGACTGCAGATTGGATGAAACTGTGCACGTTTTTGTCCCTTCAGTTGCCTTATGTTGAATCAGTTATATT
TATCTGTACCTTCTTTGCTACTTAAAATATGCTCACAGTTTGTAGTCATGTAGAAAAGGCCAGTATAAAAATGTAGTAGACTTAAAGACC
CCACTCGACCATGAGACTTTCTCTTTGTCAATTTGGGAATTATTATTATTAATTTAGAAATGGGGTCTTGTTATGTTGCCCAGGCTGAAT
TCAGACTCCTGGGCTTAAGGGATCCTTCCGCCTCAGCCTCCTGAGTAGCTGGGACTACAGTTGTGCACCACCACACCAAACAAGAATTGA
TTATATTGCTTCTGTGCTATGGTACCAGCAGATTATTCAGCCATGCTTCTAAAGGCAGTCTAGCCTAGAGGCCGTACAGCTGTTTGGTTT
GCATATGTTTTAGCTTTTCTTTTGGTTTTTAGTATTTCCTAAAACATAGGGGAAAAAACGAGGTCATTTCTACTAAGCACTAGGACCTGC
CATAGTGAGTTTAAGTGCCTACCTTGCAGCAGTTAATACTAGATTGTGTTCTGTCTCTGTTCAGGTAACAGGACTGCATTCCTGCTCAAG
GATGATTCCTTGCTGCTGCTTATGTTCTGTTGTTTTTAGGATGGAGCTGGTTGTTATTCACCAACTAAGGGAACAGTTAGAGCAGAGATG
AAGAAATTATGAACTGTTATCCTTATTCTGAGCCTTCTCCTCCTAACCCTCATCAGTTAAGGTTAGGAAGAACAAGATGCCATAATGCCT
ATGAAGACTTCTTTAACAATCTTGTTTGGGTTTTTTTCTAGGTATATTATTAGTGTTTTATGGTCTATGTTCTTTAAGCAATAAATAAAT

>96810_96810_2_UNC13B-TAF7L_UNC13B_chr9_35162302_ENST00000378496_TAF7L_chrX_100524225_ENST00000372905_length(amino acids)=78AA_BP=30

--------------------------------------------------------------
>96810_96810_3_UNC13B-TAF7L_UNC13B_chr9_35162302_ENST00000396787_TAF7L_chrX_100524225_ENST00000372905_length(transcript)=1288nt_BP=304nt
GGGAGGGAGTCCCGGCAGCTCCTACCTCCCAGCGATGGCGTCGCTGTGCCGCGCCCAGTCCCCAGCCTGCCGGCCGGTACTCACCGCTAC
CCGGAGTTCGCTCAGACGGTGAGATTTGGGGCGGGTCCGAGGCAGCGGCGGGACGCTACCTGCGACCGGGACCATGAGGAGCTGCCAGAC
CCGTGGGGCCGGTAACGAGAGCAGTCGCGGCACCTGCTGAGAGGAAAGAGGGAGCGGTCCGGCGCGGCTGGGGCGCGGCAGAGGCTTGCC
CGATCCTCGGCCATGTCACTGCTCTGCGTGCGCGCTCATTTCCCTACAGGAACAGTTGCAGCGTTTTCTGAAGAAGTGAGGAGAGCCATT
GGCGTGGCCCACAAACCTTGGATTCACCATCCAGACTGCAGATTGGATGAAACTGTGCACGTTTTTGTCCCTTCAGTTGCCTTATGTTGA
ATCAGTTATATTTATCTGTACCTTCTTTGCTACTTAAAATATGCTCACAGTTTGTAGTCATGTAGAAAAGGCCAGTATAAAAATGTAGTA
GACTTAAAGACCCCACTCGACCATGAGACTTTCTCTTTGTCAATTTGGGAATTATTATTATTAATTTAGAAATGGGGTCTTGTTATGTTG
CCCAGGCTGAATTCAGACTCCTGGGCTTAAGGGATCCTTCCGCCTCAGCCTCCTGAGTAGCTGGGACTACAGTTGTGCACCACCACACCA
AACAAGAATTGATTATATTGCTTCTGTGCTATGGTACCAGCAGATTATTCAGCCATGCTTCTAAAGGCAGTCTAGCCTAGAGGCCGTACA
GCTGTTTGGTTTGCATATGTTTTAGCTTTTCTTTTGGTTTTTAGTATTTCCTAAAACATAGGGGAAAAAACGAGGTCATTTCTACTAAGC
ACTAGGACCTGCCATAGTGAGTTTAAGTGCCTACCTTGCAGCAGTTAATACTAGATTGTGTTCTGTCTCTGTTCAGGTAACAGGACTGCA
TTCCTGCTCAAGGATGATTCCTTGCTGCTGCTTATGTTCTGTTGTTTTTAGGATGGAGCTGGTTGTTATTCACCAACTAAGGGAACAGTT
AGAGCAGAGATGAAGAAATTATGAACTGTTATCCTTATTCTGAGCCTTCTCCTCCTAACCCTCATCAGTTAAGGTTAGGAAGAACAAGAT
GCCATAATGCCTATGAAGACTTCTTTAACAATCTTGTTTGGGTTTTTTTCTAGGTATATTATTAGTGTTTTATGGTCTATGTTCTTTAAG

>96810_96810_3_UNC13B-TAF7L_UNC13B_chr9_35162302_ENST00000396787_TAF7L_chrX_100524225_ENST00000372905_length(amino acids)=79AA_BP=

--------------------------------------------------------------

Top

Fusion Gene PPI Analysis for UNC13B-TAF7L


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for UNC13B-TAF7L


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for UNC13B-TAF7L


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource