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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:BIN1-TLE2 (FusionGDB2 ID:9729)

Fusion Gene Summary for BIN1-TLE2

check button Fusion gene summary
Fusion gene informationFusion gene name: BIN1-TLE2
Fusion gene ID: 9729
HgeneTgene
Gene symbol

BIN1

TLE2

Gene ID

274

7089

Gene namebridging integrator 1TLE family member 2, transcriptional corepressor
SynonymsAMPH2|AMPHL|CNM2|SH3P9ESG|ESG2|GRG2
Cytomap

2q14.3

19p13.3

Type of geneprotein-codingprotein-coding
Descriptionmyc box-dependent-interacting protein 1amphiphysin IIamphiphysin-like proteinbox dependant MYC interacting protein 1box-dependent myc-interacting protein 1transducin-like enhancer protein 2enhancer of split groucho-like protein 2transducin like enhancer of split 2transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)transducin-like enhancer of split 2, homolog of Drosophila E(sp1)
Modification date2020032220200313
UniProtAcc

O00499

.
Ensembl transtripts involved in fusion geneENST00000259238, ENST00000316724, 
ENST00000346226, ENST00000348750, 
ENST00000351659, ENST00000352848, 
ENST00000357970, ENST00000376113, 
ENST00000393040, ENST00000393041, 
ENST00000409400, ENST00000466111, 
ENST00000262953, ENST00000455444, 
ENST00000591529, ENST00000426948, 
ENST00000443826, ENST00000447365, 
ENST00000586422, ENST00000587217, 
ENST00000590536, 
Fusion gene scores* DoF score3 X 3 X 1=95 X 6 X 2=60
# samples 36
** MAII scorelog2(3/9*10)=1.73696559416621
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(6/60*10)=0
Context

PubMed: BIN1 [Title/Abstract] AND TLE2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointBIN1(127830315)-TLE2(3005524), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneBIN1

GO:0033292

T-tubule organization

24755653

HgeneBIN1

GO:0043065

positive regulation of apoptotic process

16530520

HgeneBIN1

GO:0071156

regulation of cell cycle arrest

10412034

TgeneTLE2

GO:0045892

negative regulation of transcription, DNA-templated

19460168

TgeneTLE2

GO:0090090

negative regulation of canonical Wnt signaling pathway

19460168


check buttonFusion gene breakpoints across BIN1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across TLE2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/ABE839306BIN1chr2

127830315

+TLE2chr19

3005524

+


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Fusion Gene ORF analysis for BIN1-TLE2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000259238ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000259238ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000259238ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000316724ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000316724ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000316724ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000346226ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000346226ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000346226ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000348750ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000348750ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000348750ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000351659ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000351659ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000351659ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000352848ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000352848ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000352848ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000357970ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000357970ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000357970ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000376113ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000376113ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000376113ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000393040ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000393040ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000393040ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000393041ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000393041ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000393041ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000409400ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000409400ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000409400ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000466111ENST00000262953BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000466111ENST00000455444BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-3CDSENST00000466111ENST00000591529BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000259238ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000259238ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000259238ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000259238ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000259238ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000259238ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000316724ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000316724ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000316724ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000316724ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000316724ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000316724ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000346226ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000346226ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000346226ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000346226ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000346226ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000346226ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000348750ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000348750ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000348750ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000348750ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000348750ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000348750ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000351659ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000351659ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000351659ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000351659ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000351659ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000351659ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000352848ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000352848ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000352848ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000352848ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000352848ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000352848ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000357970ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000357970ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000357970ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000357970ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000357970ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000357970ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000376113ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000376113ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000376113ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000376113ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000376113ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000376113ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393040ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393040ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393040ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393040ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393040ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393040ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393041ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393041ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393041ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393041ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393041ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000393041ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000409400ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000409400ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000409400ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000409400ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000409400ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000409400ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000466111ENST00000426948BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000466111ENST00000443826BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000466111ENST00000447365BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000466111ENST00000586422BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000466111ENST00000587217BIN1chr2

127830315

+TLE2chr19

3005524

+
intron-intronENST00000466111ENST00000590536BIN1chr2

127830315

+TLE2chr19

3005524

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for BIN1-TLE2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for BIN1-TLE2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:127830315/:3005524)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
BIN1

O00499

.
FUNCTION: Is a key player in the control of plasma membrane curvature, membrane shaping and membrane remodeling. Required in muscle cells for the formation of T-tubules, tubular invaginations of the plasma membrane that function in depolarization-contraction coupling (PubMed:24755653). Is a negative regulator of endocytosis (By similarity). Is also involved in the regulation of intracellular vesicles sorting, modulation of BACE1 trafficking and the control of amyloid-beta production (PubMed:27179792). In neuronal circuits, endocytosis regulation may influence the internalization of PHF-tau aggregates (By similarity). May be involved in the regulation of MYC activity and the control cell proliferation (PubMed:8782822). Has actin bundling activity and stabilizes actin filaments against depolymerization in vitro (PubMed:28893863). {ECO:0000250|UniProtKB:O08839, ECO:0000269|PubMed:24755653, ECO:0000269|PubMed:27179792, ECO:0000269|PubMed:28893863, ECO:0000269|PubMed:8782822}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for BIN1-TLE2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for BIN1-TLE2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for BIN1-TLE2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for BIN1-TLE2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource