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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:VAV2-COL27A1 (FusionGDB2 ID:97933) |
Fusion Gene Summary for VAV2-COL27A1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: VAV2-COL27A1 | Fusion gene ID: 97933 | Hgene | Tgene | Gene symbol | VAV2 | COL27A1 | Gene ID | 7410 | 85301 |
Gene name | vav guanine nucleotide exchange factor 2 | collagen type XXVII alpha 1 chain | |
Synonyms | VAV-2 | STLS | |
Cytomap | 9q34.2 | 9q32 | |
Type of gene | protein-coding | protein-coding | |
Description | guanine nucleotide exchange factor VAV2vav 2 oncogene | collagen alpha-1(XXVII) chaincollagen, type XXVII, alpha 1 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q8IZC6 | |
Ensembl transtripts involved in fusion gene | ENST00000371850, ENST00000371851, ENST00000406606, ENST00000486113, | ENST00000477421, ENST00000356083, | |
Fusion gene scores | * DoF score | 13 X 11 X 11=1573 | 7 X 8 X 5=280 |
# samples | 19 | 8 | |
** MAII score | log2(19/1573*10)=-3.04944734708474 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/280*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: VAV2 [Title/Abstract] AND COL27A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | VAV2(136804225)-COL27A1(117047004), # samples:3 VAV2(136804224)-COL27A1(117047003), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across VAV2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across COL27A1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | PRAD | TCGA-XQ-A8TA-01A | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
ChimerDB4 | PRAD | TCGA-XQ-A8TA-01A | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
ChimerDB4 | PRAD | TCGA-XQ-A8TA | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
ChimerDB4 | PRAD | TCGA-XQ-A8TA | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
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Fusion Gene ORF analysis for VAV2-COL27A1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000371850 | ENST00000477421 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
5CDS-intron | ENST00000371850 | ENST00000477421 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
5CDS-intron | ENST00000371851 | ENST00000477421 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
5CDS-intron | ENST00000371851 | ENST00000477421 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
5CDS-intron | ENST00000406606 | ENST00000477421 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
5CDS-intron | ENST00000406606 | ENST00000477421 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
5UTR-3CDS | ENST00000486113 | ENST00000356083 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
5UTR-3CDS | ENST00000486113 | ENST00000356083 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
5UTR-intron | ENST00000486113 | ENST00000477421 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
5UTR-intron | ENST00000486113 | ENST00000477421 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
In-frame | ENST00000371850 | ENST00000356083 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
In-frame | ENST00000371850 | ENST00000356083 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
In-frame | ENST00000371851 | ENST00000356083 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
In-frame | ENST00000371851 | ENST00000356083 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
In-frame | ENST00000406606 | ENST00000356083 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + |
In-frame | ENST00000406606 | ENST00000356083 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000406606 | VAV2 | chr9 | 136804225 | - | ENST00000356083 | COL27A1 | chr9 | 117047004 | + | 3790 | 324 | 3 | 1973 | 656 |
ENST00000371850 | VAV2 | chr9 | 136804225 | - | ENST00000356083 | COL27A1 | chr9 | 117047004 | + | 3819 | 353 | 32 | 2002 | 656 |
ENST00000371851 | VAV2 | chr9 | 136804225 | - | ENST00000356083 | COL27A1 | chr9 | 117047004 | + | 4113 | 647 | 203 | 2296 | 697 |
ENST00000406606 | VAV2 | chr9 | 136804224 | - | ENST00000356083 | COL27A1 | chr9 | 117047003 | + | 3790 | 324 | 3 | 1973 | 656 |
ENST00000371850 | VAV2 | chr9 | 136804224 | - | ENST00000356083 | COL27A1 | chr9 | 117047003 | + | 3819 | 353 | 32 | 2002 | 656 |
ENST00000371851 | VAV2 | chr9 | 136804224 | - | ENST00000356083 | COL27A1 | chr9 | 117047003 | + | 4113 | 647 | 203 | 2296 | 697 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000406606 | ENST00000356083 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + | 0.006286559 | 0.99371344 |
ENST00000371850 | ENST00000356083 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + | 0.006300757 | 0.9936992 |
ENST00000371851 | ENST00000356083 | VAV2 | chr9 | 136804225 | - | COL27A1 | chr9 | 117047004 | + | 0.006965246 | 0.9930347 |
ENST00000406606 | ENST00000356083 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + | 0.006286559 | 0.99371344 |
ENST00000371850 | ENST00000356083 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + | 0.006300757 | 0.9936992 |
ENST00000371851 | ENST00000356083 | VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + | 0.006965246 | 0.9930347 |
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Fusion Genomic Features for VAV2-COL27A1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + | 0.000129792 | 0.9998702 |
VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + | 0.000129792 | 0.9998702 |
VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + | 0.000129792 | 0.9998702 |
VAV2 | chr9 | 136804224 | - | COL27A1 | chr9 | 117047003 | + | 0.000129792 | 0.9998702 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for VAV2-COL27A1 |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr9:136804225/chr9:117047004) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | COL27A1 |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Plays a role during the calcification of cartilage and the transition of cartilage to bone. {ECO:0000269|PubMed:17693149}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1318_1378 | 1311 | 1861.0 | Domain | Note=Collagen-like 12 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1382_1441 | 1311 | 1861.0 | Domain | Note=Collagen-like 13 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1442_1501 | 1311 | 1861.0 | Domain | Note=Collagen-like 14 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1502_1561 | 1311 | 1861.0 | Domain | Note=Collagen-like 15 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1562_1621 | 1311 | 1861.0 | Domain | Note=Collagen-like 16 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1660_1860 | 1311 | 1861.0 | Domain | Fibrillar collagen NC1 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1318_1378 | 1311 | 1861.0 | Domain | Note=Collagen-like 12 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1382_1441 | 1311 | 1861.0 | Domain | Note=Collagen-like 13 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1442_1501 | 1311 | 1861.0 | Domain | Note=Collagen-like 14 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1502_1561 | 1311 | 1861.0 | Domain | Note=Collagen-like 15 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1562_1621 | 1311 | 1861.0 | Domain | Note=Collagen-like 16 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1660_1860 | 1311 | 1861.0 | Domain | Fibrillar collagen NC1 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371850 | - | 2 | 30 | 198_376 | 107 | 879.0 | Domain | DH |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371850 | - | 2 | 30 | 1_120 | 107 | 879.0 | Domain | Calponin-homology (CH) |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371850 | - | 2 | 30 | 405_512 | 107 | 879.0 | Domain | PH |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371850 | - | 2 | 30 | 586_652 | 107 | 879.0 | Domain | SH3 1 |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371850 | - | 2 | 30 | 673_767 | 107 | 879.0 | Domain | SH2 |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371850 | - | 2 | 30 | 816_877 | 107 | 879.0 | Domain | SH3 2 |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371851 | - | 2 | 28 | 198_376 | 107 | 869.0 | Domain | DH |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371851 | - | 2 | 28 | 1_120 | 107 | 869.0 | Domain | Calponin-homology (CH) |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371851 | - | 2 | 28 | 405_512 | 107 | 869.0 | Domain | PH |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371851 | - | 2 | 28 | 586_652 | 107 | 869.0 | Domain | SH3 1 |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371851 | - | 2 | 28 | 673_767 | 107 | 869.0 | Domain | SH2 |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371851 | - | 2 | 28 | 816_877 | 107 | 869.0 | Domain | SH3 2 |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000406606 | - | 2 | 27 | 198_376 | 107 | 840.0 | Domain | DH |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000406606 | - | 2 | 27 | 1_120 | 107 | 840.0 | Domain | Calponin-homology (CH) |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000406606 | - | 2 | 27 | 405_512 | 107 | 840.0 | Domain | PH |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000406606 | - | 2 | 27 | 586_652 | 107 | 840.0 | Domain | SH3 1 |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000406606 | - | 2 | 27 | 673_767 | 107 | 840.0 | Domain | SH2 |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000406606 | - | 2 | 27 | 816_877 | 107 | 840.0 | Domain | SH3 2 |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371850 | - | 2 | 30 | 198_376 | 107 | 879.0 | Domain | DH |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371850 | - | 2 | 30 | 1_120 | 107 | 879.0 | Domain | Calponin-homology (CH) |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371850 | - | 2 | 30 | 405_512 | 107 | 879.0 | Domain | PH |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371850 | - | 2 | 30 | 586_652 | 107 | 879.0 | Domain | SH3 1 |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371850 | - | 2 | 30 | 673_767 | 107 | 879.0 | Domain | SH2 |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371850 | - | 2 | 30 | 816_877 | 107 | 879.0 | Domain | SH3 2 |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371851 | - | 2 | 28 | 198_376 | 107 | 869.0 | Domain | DH |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371851 | - | 2 | 28 | 1_120 | 107 | 869.0 | Domain | Calponin-homology (CH) |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371851 | - | 2 | 28 | 405_512 | 107 | 869.0 | Domain | PH |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371851 | - | 2 | 28 | 586_652 | 107 | 869.0 | Domain | SH3 1 |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371851 | - | 2 | 28 | 673_767 | 107 | 869.0 | Domain | SH2 |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371851 | - | 2 | 28 | 816_877 | 107 | 869.0 | Domain | SH3 2 |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000406606 | - | 2 | 27 | 198_376 | 107 | 840.0 | Domain | DH |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000406606 | - | 2 | 27 | 1_120 | 107 | 840.0 | Domain | Calponin-homology (CH) |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000406606 | - | 2 | 27 | 405_512 | 107 | 840.0 | Domain | PH |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000406606 | - | 2 | 27 | 586_652 | 107 | 840.0 | Domain | SH3 1 |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000406606 | - | 2 | 27 | 673_767 | 107 | 840.0 | Domain | SH2 |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000406606 | - | 2 | 27 | 816_877 | 107 | 840.0 | Domain | SH3 2 |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371850 | - | 2 | 30 | 523_572 | 107 | 879.0 | Zinc finger | Phorbol-ester/DAG-type |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000371851 | - | 2 | 28 | 523_572 | 107 | 869.0 | Zinc finger | Phorbol-ester/DAG-type |
Hgene | VAV2 | chr9:136804224 | chr9:117047003 | ENST00000406606 | - | 2 | 27 | 523_572 | 107 | 840.0 | Zinc finger | Phorbol-ester/DAG-type |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371850 | - | 2 | 30 | 523_572 | 107 | 879.0 | Zinc finger | Phorbol-ester/DAG-type |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000371851 | - | 2 | 28 | 523_572 | 107 | 869.0 | Zinc finger | Phorbol-ester/DAG-type |
Hgene | VAV2 | chr9:136804225 | chr9:117047004 | ENST00000406606 | - | 2 | 27 | 523_572 | 107 | 840.0 | Zinc finger | Phorbol-ester/DAG-type |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 283_1621 | 1311 | 1861.0 | Compositional bias | Note=Pro-rich | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 283_1621 | 1311 | 1861.0 | Compositional bias | Note=Pro-rich | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1003_1062 | 1311 | 1861.0 | Domain | Note=Collagen-like 7 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1066_1125 | 1311 | 1861.0 | Domain | Note=Collagen-like 8 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1126_1185 | 1311 | 1861.0 | Domain | Note=Collagen-like 9 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1192_1251 | 1311 | 1861.0 | Domain | Note=Collagen-like 10 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 1258_1317 | 1311 | 1861.0 | Domain | Note=Collagen-like 11 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 625_679 | 1311 | 1861.0 | Domain | Note=Collagen-like 1 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 688_747 | 1311 | 1861.0 | Domain | Note=Collagen-like 2 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 71_236 | 1311 | 1861.0 | Domain | Note=Laminin G-like | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 748_807 | 1311 | 1861.0 | Domain | Note=Collagen-like 3 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 808_867 | 1311 | 1861.0 | Domain | Note=Collagen-like 4 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 871_930 | 1311 | 1861.0 | Domain | Note=Collagen-like 5 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 931_990 | 1311 | 1861.0 | Domain | Note=Collagen-like 6 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1003_1062 | 1311 | 1861.0 | Domain | Note=Collagen-like 7 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1066_1125 | 1311 | 1861.0 | Domain | Note=Collagen-like 8 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1126_1185 | 1311 | 1861.0 | Domain | Note=Collagen-like 9 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1192_1251 | 1311 | 1861.0 | Domain | Note=Collagen-like 10 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 1258_1317 | 1311 | 1861.0 | Domain | Note=Collagen-like 11 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 625_679 | 1311 | 1861.0 | Domain | Note=Collagen-like 1 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 688_747 | 1311 | 1861.0 | Domain | Note=Collagen-like 2 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 71_236 | 1311 | 1861.0 | Domain | Note=Laminin G-like | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 748_807 | 1311 | 1861.0 | Domain | Note=Collagen-like 3 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 808_867 | 1311 | 1861.0 | Domain | Note=Collagen-like 4 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 871_930 | 1311 | 1861.0 | Domain | Note=Collagen-like 5 | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 931_990 | 1311 | 1861.0 | Domain | Note=Collagen-like 6 | |
Tgene | COL27A1 | chr9:136804224 | chr9:117047003 | ENST00000356083 | 39 | 61 | 625_1618 | 1311 | 1861.0 | Region | Note=Triple-helical region | |
Tgene | COL27A1 | chr9:136804225 | chr9:117047004 | ENST00000356083 | 39 | 61 | 625_1618 | 1311 | 1861.0 | Region | Note=Triple-helical region |
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Fusion Gene Sequence for VAV2-COL27A1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>97933_97933_1_VAV2-COL27A1_VAV2_chr9_136804224_ENST00000371850_COL27A1_chr9_117047003_ENST00000356083_length(transcript)=3819nt_BP=353nt ACTGCCCTGAGCCGGTCGGGCCCGCGGGCGCCATGGAGCAGTGGCGGCAGTGCGGCCGCTGGCTCATCGATTGCAAGGTCCTGCCGCCCA ACCACCGGGTGGTGTGGCCCTCGGCCGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGGGTCCTTCTGTGCCAGCTGCTGCACAACC TCTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAGTTTCTGTGTTTGAAGAACATACGCACCTTCCTGA AAGTCTGCCACGATAAATTTGGATTAAGGAACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATGTGCGAGACTTTGGAAAGGGACACA AAGGCATTGTGGGACCCCTTGGACCTCCTGGACCAAAAGGCGAAAAGGGGGAGCAGGGCGAGGACGGCAAGGCTGAGGGGCCCCCTGGGC CACCTGGAGATCGGGGCCCTGTGGGTGATCGAGGAGACCGCGGGGAACCGGGAGACCCTGGGTACCCTGGACAGGAGGGTGTGCAAGGCC TCCGTGGAAAGCCAGGCCAGCAGGGCCAACCCGGGCATCCGGGACCCCGGGGGTGGCCGGGACCCAAAGGATCGAAAGGCGCAGAGGGAC CAAAGGGAAAGCAAGGCAAGGCAGGGGCCCCAGGCCGGAGGGGGGTCCAGGGCCTGCAGGGGCTGCCAGGGCCCCGGGGCGTGGTGGGGA GACAGGGCCTCGAGGGCATCGCTGGACCAGATGGGCTTCCTGGCAGGGACGGGCAAGCAGGACAGCAGGGGGAGCAGGGAGACGATGGGG ACCCTGGCCCCATGGGCCCTGCTGGGAAGAGAGGAAATCCAGGTGTGGCCGGCTTACCTGGAGCACAGGGACCCCCAGGATTCAAGGGTG AGAGTGGGTTACCCGGACAGCTGGGTCCCCCTGGCAAGCGAGGAACAGAGGGCAGAACGGGGCTCCCTGGAAACCAGGGGGAGCCTGGGT CCAAAGGCCAGCCGGGCGACTCTGGCGAGATGGGCTTCCCAGGAATGGCAGGTCTCTTCGGACCCAAGGGCCCGCCTGGAGACATTGGCT TCAAAGGCATCCAGGGCCCTCGGGGGCCACCTGGCTTGATGGGAAAGGAAGGCATCGTCGGGCCCCTCGGAATCCTGGGACCTTCGGGAC TCCCGGGTCCGAAGGGTGACAAAGGCAGCCGTGGGGACTGGGGATTGCAAGGTCCGAGGGGTCCTCCCGGCCCCAGAGGGCGGCCCGGCC CCCCGGGTCCTCCAGGGGGTCCTATCCAATTGCAACAAGATGATCTTGGGGCAGCTTTCCAGACGTGGATGGACACCAGTGGAGCACTCA GGCCAGAGAGTTACAGCTATCCAGACCGGCTGGTGCTGGACCAGGGAGGAGAGATCTTTAAAACCTTACACTACCTCAGCAACCTCATCC AGAGCATTAAGACGCCCCTGGGCACCAAAGAGAACCCCGCCCGGGTCTGCAGGGACCTCATGGACTGTGAGCAGAAGATGGTGGATGGTA CCTACTGGGTGGATCCAAACCTTGGCTGCTCCTCTGACACCATCGAGGTCTCCTGCAACTTCACTCATGGTGGACAGACGTGTCTCAAGC CCATCACGGCCTCCAAGGTCGAGTTTGCCATCAGCCGGGTCCAGATGAATTTCCTGCACCTGCTAAGCTCCGAGGTGACCCAGCACATCA CCATCCACTGCCTTAACATGACCGTGTGGCAGGAGGGCACTGGGCAGACCCCAGCCAAGCAGGCCGTACGCTTCCGGGCCTGGAATGGAC AGATTTTTGAAGCTGGGGGTCAGTTCCGGCCCGAGGTGTCCATGGATGGCTGCAAGGTCCAAGATGGCCGCTGGCATCAGACACTCTTCA CCTTCCGGACCCAAGACCCCCAACAGCTGCCCATCATCAGTGTGGACAACCTCCCTCCTGCCTCATCAGGGAAGCAGTACCGCCTGGAAG TTGGACCTGCGTGCTTCCTCTGACCTCTGACCTCGTGGCCACTCTAGGCCTCACGGAGGAGGGAAGAGGAAGAGGCAAGGGGAGGGTACT GAGGGGCAGATGGCTCCAGGAGAGGCAGCTCCCCTGCCCAAGGGTCCTTGGGCAGACCCCAGCTGTTGTCTGCCCAGTAGAAGTGGGTGG GGGTAGGAGGGGATAGGGTGTCCTTGGGAACAATGGATCCCAGCTTAGCCCCAAAGACCAACCAAAGAGCCAGCCAGAGTAAGCTGGACC TGCAACCTGCCTGAGCCCCGTGGCCTCTCAGCTCTGCGGCCACCCCGTTCCCTCCCCAGCTTCCTGCCCAAAGAGCCCCACATTCAAGCC AACTTGAGGGAAGGGGGCGTCTCGTCAGCTGGTCCCTGCTAGGGAGCTATTGATGTGCAATATTAGAAAGGAGACATGAAAAAAGGAGAA AAGGAAAGACAGAAGTGTATATATATATTATTTAAACAAACAAAAAGAAGGTGCGTTACTATTTTTTTTTCACCCGGGAAAGAGGTGAGA GGATGGGAAGGAGCAGCCAGGCGTGGGAAGCGGCGAGATCCTCGGGCTGGGGGTGCCCACGTTTGCTACCTCCCACTGTGAAATCGCTGG TGCTCACAATTGTCTCTCACAGTGTATGTGATTTTTTTAAGGAAAAAAAAAAATCCCTATTTAAGATTCTGAAGGTGCTACCATTATTTT GCCACAGACTTTGAAGAAACTTTTGGATGTGGGGCATCATCCGCATCTTTCTCTCTCCTCCAAATGACAAAGTTTGGGGAATTTTTGAAT TTTCCTAGCATCGCCCTTGTGCTCATCAGGTAATCTGCTAAGGAGGAAAAAAGAAAAGAAAAAAGGAAAAAAAAAAAAAAAAAGCAAAAC AAAAACAAAAACAAAAACCCTACCAGAAACCAGAAGTAGAGAGATTTACCATATAACTTATGGACTTTGAAATGTCTGTCCTTTTAAGGC AGCAGGGAGGCCTGGGTGCGAAGCATGTTGGCTTGGCCCTTCACGGTCCTGGAGGGAGGTGAGGCTGGCCTTGGAAGGCGTGCCCTGGAG AGGTCTTGGGTGAAAACTTGACCTTGAAGAAACCAATCACAAAAGCGGCGTTGGGTCAGGGCTAGGCTTAGAGGTGAAGCATCAACATGG AACCATCTCAGGAAGCCGCATCGCCTCTTCCGAGGTCCTCACTTCCAGGAGCCTGTCCTTGCAAGATGCAATCATCGTTCCTGCTTTTTC ATTGTCATTAAATTCTGTAGAAACCCATTGTCATTAGCTCCAAGTGTAAATTTGGGTCAAGGAGACAGAATAATAATGGGAATCTCGGAG TTCGACACCATAGTGACGTTCAGCGTCCTCTGAATTGTGCTACATCAGCGAACAAGTCGGCGCTTGAATTGGATTTTGAGGTTATTTTAA CCATGGAATTATTTTTATAGAAGGGGAAAATGTATGTGAAAGTCTCTATTTGTGTATTTCTCTCCTAAAGTTGTGTCTCTTTGGGAATTG GATTTGATTTTTATTATTTAATACCTCACTTTGGCCCGTCCCCCCTCCCAACACTTCTGTATCCTCGCCCTGCCGCCCCAGCCTGGACGC TCTGCGTGGAAGTGCGTGTTTGTAGCAGCTCGGGCCTCATCTCAGCGCTCGGATCCCTCCTGCTGCCAGAATCCACTGGCCTCTGTCTCA TTCTTGGGTTTTCCTGCTGTCTTCGTTTACGTCTCTGTCCACATGTCAGTGTATTAAAACCCCAATGGGTTCCGTTTCTCCTTTTCCCCT >97933_97933_1_VAV2-COL27A1_VAV2_chr9_136804224_ENST00000371850_COL27A1_chr9_117047003_ENST00000356083_length(amino acids)=656AA_BP=153 MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRN SELFDPFDLFDVRDFGKGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQP GHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKR GNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPP GLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRL VLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAI SRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSMDGCKVQDGRWHQTLFTFRTQDPQQLP -------------------------------------------------------------- >97933_97933_2_VAV2-COL27A1_VAV2_chr9_136804224_ENST00000371851_COL27A1_chr9_117047003_ENST00000356083_length(transcript)=4113nt_BP=647nt CGCGGATTGGGGAGCGCTGCGGCGACTGGCTGCGTGGAGCCCGGCCCGGGGCCCGCAGGCACTTGCGTGTGTGAAGCGGGGAGATCCGGC GCGCTGCCCGTTGCCCGCCCCGCGGCCGCACGTGGGCGGGAGCGGCGGCCCGAGAGGAGCCCGAGGAGTAGGAGGAGGAAGAGGAGGGGA CGCACGGCGGCGCAGCGGGGGACCTGGGGCAGCCCGCGCGAAGCCCCGCCCCGGCCCTGAGCCCCGCGCGCGCGCGGGCGGGATGCCCCG CGGCCGCTGCACTTTGGCTCGAGCACTGCCCTGAGCCGGTCGGGCCCGCGGGCGCCATGGAGCAGTGGCGGCAGTGCGGCCGCTGGCTCA TCGATTGCAAGGTCCTGCCGCCCAACCACCGGGTGGTGTGGCCCTCGGCCGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGGGTCC TTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAGTTTCTGTGTT TGAAGAACATACGCACCTTCCTGAAAGTCTGCCACGATAAATTTGGATTAAGGAACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATG TGCGAGACTTTGGAAAGGGACACAAAGGCATTGTGGGACCCCTTGGACCTCCTGGACCAAAAGGCGAAAAGGGGGAGCAGGGCGAGGACG GCAAGGCTGAGGGGCCCCCTGGGCCACCTGGAGATCGGGGCCCTGTGGGTGATCGAGGAGACCGCGGGGAACCGGGAGACCCTGGGTACC CTGGACAGGAGGGTGTGCAAGGCCTCCGTGGAAAGCCAGGCCAGCAGGGCCAACCCGGGCATCCGGGACCCCGGGGGTGGCCGGGACCCA AAGGATCGAAAGGCGCAGAGGGACCAAAGGGAAAGCAAGGCAAGGCAGGGGCCCCAGGCCGGAGGGGGGTCCAGGGCCTGCAGGGGCTGC CAGGGCCCCGGGGCGTGGTGGGGAGACAGGGCCTCGAGGGCATCGCTGGACCAGATGGGCTTCCTGGCAGGGACGGGCAAGCAGGACAGC AGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCATGGGCCCTGCTGGGAAGAGAGGAAATCCAGGTGTGGCCGGCTTACCTGGAGCAC AGGGACCCCCAGGATTCAAGGGTGAGAGTGGGTTACCCGGACAGCTGGGTCCCCCTGGCAAGCGAGGAACAGAGGGCAGAACGGGGCTCC CTGGAAACCAGGGGGAGCCTGGGTCCAAAGGCCAGCCGGGCGACTCTGGCGAGATGGGCTTCCCAGGAATGGCAGGTCTCTTCGGACCCA AGGGCCCGCCTGGAGACATTGGCTTCAAAGGCATCCAGGGCCCTCGGGGGCCACCTGGCTTGATGGGAAAGGAAGGCATCGTCGGGCCCC TCGGAATCCTGGGACCTTCGGGACTCCCGGGTCCGAAGGGTGACAAAGGCAGCCGTGGGGACTGGGGATTGCAAGGTCCGAGGGGTCCTC CCGGCCCCAGAGGGCGGCCCGGCCCCCCGGGTCCTCCAGGGGGTCCTATCCAATTGCAACAAGATGATCTTGGGGCAGCTTTCCAGACGT GGATGGACACCAGTGGAGCACTCAGGCCAGAGAGTTACAGCTATCCAGACCGGCTGGTGCTGGACCAGGGAGGAGAGATCTTTAAAACCT TACACTACCTCAGCAACCTCATCCAGAGCATTAAGACGCCCCTGGGCACCAAAGAGAACCCCGCCCGGGTCTGCAGGGACCTCATGGACT GTGAGCAGAAGATGGTGGATGGTACCTACTGGGTGGATCCAAACCTTGGCTGCTCCTCTGACACCATCGAGGTCTCCTGCAACTTCACTC ATGGTGGACAGACGTGTCTCAAGCCCATCACGGCCTCCAAGGTCGAGTTTGCCATCAGCCGGGTCCAGATGAATTTCCTGCACCTGCTAA GCTCCGAGGTGACCCAGCACATCACCATCCACTGCCTTAACATGACCGTGTGGCAGGAGGGCACTGGGCAGACCCCAGCCAAGCAGGCCG TACGCTTCCGGGCCTGGAATGGACAGATTTTTGAAGCTGGGGGTCAGTTCCGGCCCGAGGTGTCCATGGATGGCTGCAAGGTCCAAGATG GCCGCTGGCATCAGACACTCTTCACCTTCCGGACCCAAGACCCCCAACAGCTGCCCATCATCAGTGTGGACAACCTCCCTCCTGCCTCAT CAGGGAAGCAGTACCGCCTGGAAGTTGGACCTGCGTGCTTCCTCTGACCTCTGACCTCGTGGCCACTCTAGGCCTCACGGAGGAGGGAAG AGGAAGAGGCAAGGGGAGGGTACTGAGGGGCAGATGGCTCCAGGAGAGGCAGCTCCCCTGCCCAAGGGTCCTTGGGCAGACCCCAGCTGT TGTCTGCCCAGTAGAAGTGGGTGGGGGTAGGAGGGGATAGGGTGTCCTTGGGAACAATGGATCCCAGCTTAGCCCCAAAGACCAACCAAA GAGCCAGCCAGAGTAAGCTGGACCTGCAACCTGCCTGAGCCCCGTGGCCTCTCAGCTCTGCGGCCACCCCGTTCCCTCCCCAGCTTCCTG CCCAAAGAGCCCCACATTCAAGCCAACTTGAGGGAAGGGGGCGTCTCGTCAGCTGGTCCCTGCTAGGGAGCTATTGATGTGCAATATTAG AAAGGAGACATGAAAAAAGGAGAAAAGGAAAGACAGAAGTGTATATATATATTATTTAAACAAACAAAAAGAAGGTGCGTTACTATTTTT TTTTCACCCGGGAAAGAGGTGAGAGGATGGGAAGGAGCAGCCAGGCGTGGGAAGCGGCGAGATCCTCGGGCTGGGGGTGCCCACGTTTGC TACCTCCCACTGTGAAATCGCTGGTGCTCACAATTGTCTCTCACAGTGTATGTGATTTTTTTAAGGAAAAAAAAAAATCCCTATTTAAGA TTCTGAAGGTGCTACCATTATTTTGCCACAGACTTTGAAGAAACTTTTGGATGTGGGGCATCATCCGCATCTTTCTCTCTCCTCCAAATG ACAAAGTTTGGGGAATTTTTGAATTTTCCTAGCATCGCCCTTGTGCTCATCAGGTAATCTGCTAAGGAGGAAAAAAGAAAAGAAAAAAGG AAAAAAAAAAAAAAAAAGCAAAACAAAAACAAAAACAAAAACCCTACCAGAAACCAGAAGTAGAGAGATTTACCATATAACTTATGGACT TTGAAATGTCTGTCCTTTTAAGGCAGCAGGGAGGCCTGGGTGCGAAGCATGTTGGCTTGGCCCTTCACGGTCCTGGAGGGAGGTGAGGCT GGCCTTGGAAGGCGTGCCCTGGAGAGGTCTTGGGTGAAAACTTGACCTTGAAGAAACCAATCACAAAAGCGGCGTTGGGTCAGGGCTAGG CTTAGAGGTGAAGCATCAACATGGAACCATCTCAGGAAGCCGCATCGCCTCTTCCGAGGTCCTCACTTCCAGGAGCCTGTCCTTGCAAGA TGCAATCATCGTTCCTGCTTTTTCATTGTCATTAAATTCTGTAGAAACCCATTGTCATTAGCTCCAAGTGTAAATTTGGGTCAAGGAGAC AGAATAATAATGGGAATCTCGGAGTTCGACACCATAGTGACGTTCAGCGTCCTCTGAATTGTGCTACATCAGCGAACAAGTCGGCGCTTG AATTGGATTTTGAGGTTATTTTAACCATGGAATTATTTTTATAGAAGGGGAAAATGTATGTGAAAGTCTCTATTTGTGTATTTCTCTCCT AAAGTTGTGTCTCTTTGGGAATTGGATTTGATTTTTATTATTTAATACCTCACTTTGGCCCGTCCCCCCTCCCAACACTTCTGTATCCTC GCCCTGCCGCCCCAGCCTGGACGCTCTGCGTGGAAGTGCGTGTTTGTAGCAGCTCGGGCCTCATCTCAGCGCTCGGATCCCTCCTGCTGC CAGAATCCACTGGCCTCTGTCTCATTCTTGGGTTTTCCTGCTGTCTTCGTTTACGTCTCTGTCCACATGTCAGTGTATTAAAACCCCAAT >97933_97933_2_VAV2-COL27A1_VAV2_chr9_136804224_ENST00000371851_COL27A1_chr9_117047003_ENST00000356083_length(amino acids)=697AA_BP=194 MGQPARSPAPALSPARARAGCPAAAALWLEHCPEPVGPAGAMEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHN LSPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRNSELFDPFDLFDVRDFGKGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPG PPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVG RQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPG SKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPG PPGPPGGPIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDG TYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNG -------------------------------------------------------------- >97933_97933_3_VAV2-COL27A1_VAV2_chr9_136804224_ENST00000406606_COL27A1_chr9_117047003_ENST00000356083_length(transcript)=3790nt_BP=324nt GCCATGGAGCAGTGGCGGCAGTGCGGCCGCTGGCTCATCGATTGCAAGGTCCTGCCGCCCAACCACCGGGTGGTGTGGCCCTCGGCCGTG GTCTTCGACCTGGCGCAGGCGCTGCGCGACGGGGTCCTTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGAC ATCAACTTCCGGCCGCAGATGTCCCAGTTTCTGTGTTTGAAGAACATACGCACCTTCCTGAAAGTCTGCCACGATAAATTTGGATTAAGG AACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATGTGCGAGACTTTGGAAAGGGACACAAAGGCATTGTGGGACCCCTTGGACCTCCT GGACCAAAAGGCGAAAAGGGGGAGCAGGGCGAGGACGGCAAGGCTGAGGGGCCCCCTGGGCCACCTGGAGATCGGGGCCCTGTGGGTGAT CGAGGAGACCGCGGGGAACCGGGAGACCCTGGGTACCCTGGACAGGAGGGTGTGCAAGGCCTCCGTGGAAAGCCAGGCCAGCAGGGCCAA CCCGGGCATCCGGGACCCCGGGGGTGGCCGGGACCCAAAGGATCGAAAGGCGCAGAGGGACCAAAGGGAAAGCAAGGCAAGGCAGGGGCC CCAGGCCGGAGGGGGGTCCAGGGCCTGCAGGGGCTGCCAGGGCCCCGGGGCGTGGTGGGGAGACAGGGCCTCGAGGGCATCGCTGGACCA GATGGGCTTCCTGGCAGGGACGGGCAAGCAGGACAGCAGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCATGGGCCCTGCTGGGAAG AGAGGAAATCCAGGTGTGGCCGGCTTACCTGGAGCACAGGGACCCCCAGGATTCAAGGGTGAGAGTGGGTTACCCGGACAGCTGGGTCCC CCTGGCAAGCGAGGAACAGAGGGCAGAACGGGGCTCCCTGGAAACCAGGGGGAGCCTGGGTCCAAAGGCCAGCCGGGCGACTCTGGCGAG ATGGGCTTCCCAGGAATGGCAGGTCTCTTCGGACCCAAGGGCCCGCCTGGAGACATTGGCTTCAAAGGCATCCAGGGCCCTCGGGGGCCA CCTGGCTTGATGGGAAAGGAAGGCATCGTCGGGCCCCTCGGAATCCTGGGACCTTCGGGACTCCCGGGTCCGAAGGGTGACAAAGGCAGC CGTGGGGACTGGGGATTGCAAGGTCCGAGGGGTCCTCCCGGCCCCAGAGGGCGGCCCGGCCCCCCGGGTCCTCCAGGGGGTCCTATCCAA TTGCAACAAGATGATCTTGGGGCAGCTTTCCAGACGTGGATGGACACCAGTGGAGCACTCAGGCCAGAGAGTTACAGCTATCCAGACCGG CTGGTGCTGGACCAGGGAGGAGAGATCTTTAAAACCTTACACTACCTCAGCAACCTCATCCAGAGCATTAAGACGCCCCTGGGCACCAAA GAGAACCCCGCCCGGGTCTGCAGGGACCTCATGGACTGTGAGCAGAAGATGGTGGATGGTACCTACTGGGTGGATCCAAACCTTGGCTGC TCCTCTGACACCATCGAGGTCTCCTGCAACTTCACTCATGGTGGACAGACGTGTCTCAAGCCCATCACGGCCTCCAAGGTCGAGTTTGCC ATCAGCCGGGTCCAGATGAATTTCCTGCACCTGCTAAGCTCCGAGGTGACCCAGCACATCACCATCCACTGCCTTAACATGACCGTGTGG CAGGAGGGCACTGGGCAGACCCCAGCCAAGCAGGCCGTACGCTTCCGGGCCTGGAATGGACAGATTTTTGAAGCTGGGGGTCAGTTCCGG CCCGAGGTGTCCATGGATGGCTGCAAGGTCCAAGATGGCCGCTGGCATCAGACACTCTTCACCTTCCGGACCCAAGACCCCCAACAGCTG CCCATCATCAGTGTGGACAACCTCCCTCCTGCCTCATCAGGGAAGCAGTACCGCCTGGAAGTTGGACCTGCGTGCTTCCTCTGACCTCTG ACCTCGTGGCCACTCTAGGCCTCACGGAGGAGGGAAGAGGAAGAGGCAAGGGGAGGGTACTGAGGGGCAGATGGCTCCAGGAGAGGCAGC TCCCCTGCCCAAGGGTCCTTGGGCAGACCCCAGCTGTTGTCTGCCCAGTAGAAGTGGGTGGGGGTAGGAGGGGATAGGGTGTCCTTGGGA ACAATGGATCCCAGCTTAGCCCCAAAGACCAACCAAAGAGCCAGCCAGAGTAAGCTGGACCTGCAACCTGCCTGAGCCCCGTGGCCTCTC AGCTCTGCGGCCACCCCGTTCCCTCCCCAGCTTCCTGCCCAAAGAGCCCCACATTCAAGCCAACTTGAGGGAAGGGGGCGTCTCGTCAGC TGGTCCCTGCTAGGGAGCTATTGATGTGCAATATTAGAAAGGAGACATGAAAAAAGGAGAAAAGGAAAGACAGAAGTGTATATATATATT ATTTAAACAAACAAAAAGAAGGTGCGTTACTATTTTTTTTTCACCCGGGAAAGAGGTGAGAGGATGGGAAGGAGCAGCCAGGCGTGGGAA GCGGCGAGATCCTCGGGCTGGGGGTGCCCACGTTTGCTACCTCCCACTGTGAAATCGCTGGTGCTCACAATTGTCTCTCACAGTGTATGT GATTTTTTTAAGGAAAAAAAAAAATCCCTATTTAAGATTCTGAAGGTGCTACCATTATTTTGCCACAGACTTTGAAGAAACTTTTGGATG TGGGGCATCATCCGCATCTTTCTCTCTCCTCCAAATGACAAAGTTTGGGGAATTTTTGAATTTTCCTAGCATCGCCCTTGTGCTCATCAG GTAATCTGCTAAGGAGGAAAAAAGAAAAGAAAAAAGGAAAAAAAAAAAAAAAAAGCAAAACAAAAACAAAAACAAAAACCCTACCAGAAA CCAGAAGTAGAGAGATTTACCATATAACTTATGGACTTTGAAATGTCTGTCCTTTTAAGGCAGCAGGGAGGCCTGGGTGCGAAGCATGTT GGCTTGGCCCTTCACGGTCCTGGAGGGAGGTGAGGCTGGCCTTGGAAGGCGTGCCCTGGAGAGGTCTTGGGTGAAAACTTGACCTTGAAG AAACCAATCACAAAAGCGGCGTTGGGTCAGGGCTAGGCTTAGAGGTGAAGCATCAACATGGAACCATCTCAGGAAGCCGCATCGCCTCTT CCGAGGTCCTCACTTCCAGGAGCCTGTCCTTGCAAGATGCAATCATCGTTCCTGCTTTTTCATTGTCATTAAATTCTGTAGAAACCCATT GTCATTAGCTCCAAGTGTAAATTTGGGTCAAGGAGACAGAATAATAATGGGAATCTCGGAGTTCGACACCATAGTGACGTTCAGCGTCCT CTGAATTGTGCTACATCAGCGAACAAGTCGGCGCTTGAATTGGATTTTGAGGTTATTTTAACCATGGAATTATTTTTATAGAAGGGGAAA ATGTATGTGAAAGTCTCTATTTGTGTATTTCTCTCCTAAAGTTGTGTCTCTTTGGGAATTGGATTTGATTTTTATTATTTAATACCTCAC TTTGGCCCGTCCCCCCTCCCAACACTTCTGTATCCTCGCCCTGCCGCCCCAGCCTGGACGCTCTGCGTGGAAGTGCGTGTTTGTAGCAGC TCGGGCCTCATCTCAGCGCTCGGATCCCTCCTGCTGCCAGAATCCACTGGCCTCTGTCTCATTCTTGGGTTTTCCTGCTGTCTTCGTTTA CGTCTCTGTCCACATGTCAGTGTATTAAAACCCCAATGGGTTCCGTTTCTCCTTTTCCCCTCTGGATTTTAAATAAATATTTAAAACTGA >97933_97933_3_VAV2-COL27A1_VAV2_chr9_136804224_ENST00000406606_COL27A1_chr9_117047003_ENST00000356083_length(amino acids)=656AA_BP=153 MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRN SELFDPFDLFDVRDFGKGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQP GHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKR GNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPP GLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRL VLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAI SRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSMDGCKVQDGRWHQTLFTFRTQDPQQLP -------------------------------------------------------------- >97933_97933_4_VAV2-COL27A1_VAV2_chr9_136804225_ENST00000371850_COL27A1_chr9_117047004_ENST00000356083_length(transcript)=3819nt_BP=353nt ACTGCCCTGAGCCGGTCGGGCCCGCGGGCGCCATGGAGCAGTGGCGGCAGTGCGGCCGCTGGCTCATCGATTGCAAGGTCCTGCCGCCCA ACCACCGGGTGGTGTGGCCCTCGGCCGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGGGTCCTTCTGTGCCAGCTGCTGCACAACC TCTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAGTTTCTGTGTTTGAAGAACATACGCACCTTCCTGA AAGTCTGCCACGATAAATTTGGATTAAGGAACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATGTGCGAGACTTTGGAAAGGGACACA AAGGCATTGTGGGACCCCTTGGACCTCCTGGACCAAAAGGCGAAAAGGGGGAGCAGGGCGAGGACGGCAAGGCTGAGGGGCCCCCTGGGC CACCTGGAGATCGGGGCCCTGTGGGTGATCGAGGAGACCGCGGGGAACCGGGAGACCCTGGGTACCCTGGACAGGAGGGTGTGCAAGGCC TCCGTGGAAAGCCAGGCCAGCAGGGCCAACCCGGGCATCCGGGACCCCGGGGGTGGCCGGGACCCAAAGGATCGAAAGGCGCAGAGGGAC CAAAGGGAAAGCAAGGCAAGGCAGGGGCCCCAGGCCGGAGGGGGGTCCAGGGCCTGCAGGGGCTGCCAGGGCCCCGGGGCGTGGTGGGGA GACAGGGCCTCGAGGGCATCGCTGGACCAGATGGGCTTCCTGGCAGGGACGGGCAAGCAGGACAGCAGGGGGAGCAGGGAGACGATGGGG ACCCTGGCCCCATGGGCCCTGCTGGGAAGAGAGGAAATCCAGGTGTGGCCGGCTTACCTGGAGCACAGGGACCCCCAGGATTCAAGGGTG AGAGTGGGTTACCCGGACAGCTGGGTCCCCCTGGCAAGCGAGGAACAGAGGGCAGAACGGGGCTCCCTGGAAACCAGGGGGAGCCTGGGT CCAAAGGCCAGCCGGGCGACTCTGGCGAGATGGGCTTCCCAGGAATGGCAGGTCTCTTCGGACCCAAGGGCCCGCCTGGAGACATTGGCT TCAAAGGCATCCAGGGCCCTCGGGGGCCACCTGGCTTGATGGGAAAGGAAGGCATCGTCGGGCCCCTCGGAATCCTGGGACCTTCGGGAC TCCCGGGTCCGAAGGGTGACAAAGGCAGCCGTGGGGACTGGGGATTGCAAGGTCCGAGGGGTCCTCCCGGCCCCAGAGGGCGGCCCGGCC CCCCGGGTCCTCCAGGGGGTCCTATCCAATTGCAACAAGATGATCTTGGGGCAGCTTTCCAGACGTGGATGGACACCAGTGGAGCACTCA GGCCAGAGAGTTACAGCTATCCAGACCGGCTGGTGCTGGACCAGGGAGGAGAGATCTTTAAAACCTTACACTACCTCAGCAACCTCATCC AGAGCATTAAGACGCCCCTGGGCACCAAAGAGAACCCCGCCCGGGTCTGCAGGGACCTCATGGACTGTGAGCAGAAGATGGTGGATGGTA CCTACTGGGTGGATCCAAACCTTGGCTGCTCCTCTGACACCATCGAGGTCTCCTGCAACTTCACTCATGGTGGACAGACGTGTCTCAAGC CCATCACGGCCTCCAAGGTCGAGTTTGCCATCAGCCGGGTCCAGATGAATTTCCTGCACCTGCTAAGCTCCGAGGTGACCCAGCACATCA CCATCCACTGCCTTAACATGACCGTGTGGCAGGAGGGCACTGGGCAGACCCCAGCCAAGCAGGCCGTACGCTTCCGGGCCTGGAATGGAC AGATTTTTGAAGCTGGGGGTCAGTTCCGGCCCGAGGTGTCCATGGATGGCTGCAAGGTCCAAGATGGCCGCTGGCATCAGACACTCTTCA CCTTCCGGACCCAAGACCCCCAACAGCTGCCCATCATCAGTGTGGACAACCTCCCTCCTGCCTCATCAGGGAAGCAGTACCGCCTGGAAG TTGGACCTGCGTGCTTCCTCTGACCTCTGACCTCGTGGCCACTCTAGGCCTCACGGAGGAGGGAAGAGGAAGAGGCAAGGGGAGGGTACT GAGGGGCAGATGGCTCCAGGAGAGGCAGCTCCCCTGCCCAAGGGTCCTTGGGCAGACCCCAGCTGTTGTCTGCCCAGTAGAAGTGGGTGG GGGTAGGAGGGGATAGGGTGTCCTTGGGAACAATGGATCCCAGCTTAGCCCCAAAGACCAACCAAAGAGCCAGCCAGAGTAAGCTGGACC TGCAACCTGCCTGAGCCCCGTGGCCTCTCAGCTCTGCGGCCACCCCGTTCCCTCCCCAGCTTCCTGCCCAAAGAGCCCCACATTCAAGCC AACTTGAGGGAAGGGGGCGTCTCGTCAGCTGGTCCCTGCTAGGGAGCTATTGATGTGCAATATTAGAAAGGAGACATGAAAAAAGGAGAA AAGGAAAGACAGAAGTGTATATATATATTATTTAAACAAACAAAAAGAAGGTGCGTTACTATTTTTTTTTCACCCGGGAAAGAGGTGAGA GGATGGGAAGGAGCAGCCAGGCGTGGGAAGCGGCGAGATCCTCGGGCTGGGGGTGCCCACGTTTGCTACCTCCCACTGTGAAATCGCTGG TGCTCACAATTGTCTCTCACAGTGTATGTGATTTTTTTAAGGAAAAAAAAAAATCCCTATTTAAGATTCTGAAGGTGCTACCATTATTTT GCCACAGACTTTGAAGAAACTTTTGGATGTGGGGCATCATCCGCATCTTTCTCTCTCCTCCAAATGACAAAGTTTGGGGAATTTTTGAAT TTTCCTAGCATCGCCCTTGTGCTCATCAGGTAATCTGCTAAGGAGGAAAAAAGAAAAGAAAAAAGGAAAAAAAAAAAAAAAAAGCAAAAC AAAAACAAAAACAAAAACCCTACCAGAAACCAGAAGTAGAGAGATTTACCATATAACTTATGGACTTTGAAATGTCTGTCCTTTTAAGGC AGCAGGGAGGCCTGGGTGCGAAGCATGTTGGCTTGGCCCTTCACGGTCCTGGAGGGAGGTGAGGCTGGCCTTGGAAGGCGTGCCCTGGAG AGGTCTTGGGTGAAAACTTGACCTTGAAGAAACCAATCACAAAAGCGGCGTTGGGTCAGGGCTAGGCTTAGAGGTGAAGCATCAACATGG AACCATCTCAGGAAGCCGCATCGCCTCTTCCGAGGTCCTCACTTCCAGGAGCCTGTCCTTGCAAGATGCAATCATCGTTCCTGCTTTTTC ATTGTCATTAAATTCTGTAGAAACCCATTGTCATTAGCTCCAAGTGTAAATTTGGGTCAAGGAGACAGAATAATAATGGGAATCTCGGAG TTCGACACCATAGTGACGTTCAGCGTCCTCTGAATTGTGCTACATCAGCGAACAAGTCGGCGCTTGAATTGGATTTTGAGGTTATTTTAA CCATGGAATTATTTTTATAGAAGGGGAAAATGTATGTGAAAGTCTCTATTTGTGTATTTCTCTCCTAAAGTTGTGTCTCTTTGGGAATTG GATTTGATTTTTATTATTTAATACCTCACTTTGGCCCGTCCCCCCTCCCAACACTTCTGTATCCTCGCCCTGCCGCCCCAGCCTGGACGC TCTGCGTGGAAGTGCGTGTTTGTAGCAGCTCGGGCCTCATCTCAGCGCTCGGATCCCTCCTGCTGCCAGAATCCACTGGCCTCTGTCTCA TTCTTGGGTTTTCCTGCTGTCTTCGTTTACGTCTCTGTCCACATGTCAGTGTATTAAAACCCCAATGGGTTCCGTTTCTCCTTTTCCCCT >97933_97933_4_VAV2-COL27A1_VAV2_chr9_136804225_ENST00000371850_COL27A1_chr9_117047004_ENST00000356083_length(amino acids)=656AA_BP=153 MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRN SELFDPFDLFDVRDFGKGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQP GHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKR GNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPP GLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRL VLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAI SRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSMDGCKVQDGRWHQTLFTFRTQDPQQLP -------------------------------------------------------------- >97933_97933_5_VAV2-COL27A1_VAV2_chr9_136804225_ENST00000371851_COL27A1_chr9_117047004_ENST00000356083_length(transcript)=4113nt_BP=647nt CGCGGATTGGGGAGCGCTGCGGCGACTGGCTGCGTGGAGCCCGGCCCGGGGCCCGCAGGCACTTGCGTGTGTGAAGCGGGGAGATCCGGC GCGCTGCCCGTTGCCCGCCCCGCGGCCGCACGTGGGCGGGAGCGGCGGCCCGAGAGGAGCCCGAGGAGTAGGAGGAGGAAGAGGAGGGGA CGCACGGCGGCGCAGCGGGGGACCTGGGGCAGCCCGCGCGAAGCCCCGCCCCGGCCCTGAGCCCCGCGCGCGCGCGGGCGGGATGCCCCG CGGCCGCTGCACTTTGGCTCGAGCACTGCCCTGAGCCGGTCGGGCCCGCGGGCGCCATGGAGCAGTGGCGGCAGTGCGGCCGCTGGCTCA TCGATTGCAAGGTCCTGCCGCCCAACCACCGGGTGGTGTGGCCCTCGGCCGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGGGTCC TTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAGTTTCTGTGTT TGAAGAACATACGCACCTTCCTGAAAGTCTGCCACGATAAATTTGGATTAAGGAACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATG TGCGAGACTTTGGAAAGGGACACAAAGGCATTGTGGGACCCCTTGGACCTCCTGGACCAAAAGGCGAAAAGGGGGAGCAGGGCGAGGACG GCAAGGCTGAGGGGCCCCCTGGGCCACCTGGAGATCGGGGCCCTGTGGGTGATCGAGGAGACCGCGGGGAACCGGGAGACCCTGGGTACC CTGGACAGGAGGGTGTGCAAGGCCTCCGTGGAAAGCCAGGCCAGCAGGGCCAACCCGGGCATCCGGGACCCCGGGGGTGGCCGGGACCCA AAGGATCGAAAGGCGCAGAGGGACCAAAGGGAAAGCAAGGCAAGGCAGGGGCCCCAGGCCGGAGGGGGGTCCAGGGCCTGCAGGGGCTGC CAGGGCCCCGGGGCGTGGTGGGGAGACAGGGCCTCGAGGGCATCGCTGGACCAGATGGGCTTCCTGGCAGGGACGGGCAAGCAGGACAGC AGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCATGGGCCCTGCTGGGAAGAGAGGAAATCCAGGTGTGGCCGGCTTACCTGGAGCAC AGGGACCCCCAGGATTCAAGGGTGAGAGTGGGTTACCCGGACAGCTGGGTCCCCCTGGCAAGCGAGGAACAGAGGGCAGAACGGGGCTCC CTGGAAACCAGGGGGAGCCTGGGTCCAAAGGCCAGCCGGGCGACTCTGGCGAGATGGGCTTCCCAGGAATGGCAGGTCTCTTCGGACCCA AGGGCCCGCCTGGAGACATTGGCTTCAAAGGCATCCAGGGCCCTCGGGGGCCACCTGGCTTGATGGGAAAGGAAGGCATCGTCGGGCCCC TCGGAATCCTGGGACCTTCGGGACTCCCGGGTCCGAAGGGTGACAAAGGCAGCCGTGGGGACTGGGGATTGCAAGGTCCGAGGGGTCCTC CCGGCCCCAGAGGGCGGCCCGGCCCCCCGGGTCCTCCAGGGGGTCCTATCCAATTGCAACAAGATGATCTTGGGGCAGCTTTCCAGACGT GGATGGACACCAGTGGAGCACTCAGGCCAGAGAGTTACAGCTATCCAGACCGGCTGGTGCTGGACCAGGGAGGAGAGATCTTTAAAACCT TACACTACCTCAGCAACCTCATCCAGAGCATTAAGACGCCCCTGGGCACCAAAGAGAACCCCGCCCGGGTCTGCAGGGACCTCATGGACT GTGAGCAGAAGATGGTGGATGGTACCTACTGGGTGGATCCAAACCTTGGCTGCTCCTCTGACACCATCGAGGTCTCCTGCAACTTCACTC ATGGTGGACAGACGTGTCTCAAGCCCATCACGGCCTCCAAGGTCGAGTTTGCCATCAGCCGGGTCCAGATGAATTTCCTGCACCTGCTAA GCTCCGAGGTGACCCAGCACATCACCATCCACTGCCTTAACATGACCGTGTGGCAGGAGGGCACTGGGCAGACCCCAGCCAAGCAGGCCG TACGCTTCCGGGCCTGGAATGGACAGATTTTTGAAGCTGGGGGTCAGTTCCGGCCCGAGGTGTCCATGGATGGCTGCAAGGTCCAAGATG GCCGCTGGCATCAGACACTCTTCACCTTCCGGACCCAAGACCCCCAACAGCTGCCCATCATCAGTGTGGACAACCTCCCTCCTGCCTCAT CAGGGAAGCAGTACCGCCTGGAAGTTGGACCTGCGTGCTTCCTCTGACCTCTGACCTCGTGGCCACTCTAGGCCTCACGGAGGAGGGAAG AGGAAGAGGCAAGGGGAGGGTACTGAGGGGCAGATGGCTCCAGGAGAGGCAGCTCCCCTGCCCAAGGGTCCTTGGGCAGACCCCAGCTGT TGTCTGCCCAGTAGAAGTGGGTGGGGGTAGGAGGGGATAGGGTGTCCTTGGGAACAATGGATCCCAGCTTAGCCCCAAAGACCAACCAAA GAGCCAGCCAGAGTAAGCTGGACCTGCAACCTGCCTGAGCCCCGTGGCCTCTCAGCTCTGCGGCCACCCCGTTCCCTCCCCAGCTTCCTG CCCAAAGAGCCCCACATTCAAGCCAACTTGAGGGAAGGGGGCGTCTCGTCAGCTGGTCCCTGCTAGGGAGCTATTGATGTGCAATATTAG AAAGGAGACATGAAAAAAGGAGAAAAGGAAAGACAGAAGTGTATATATATATTATTTAAACAAACAAAAAGAAGGTGCGTTACTATTTTT TTTTCACCCGGGAAAGAGGTGAGAGGATGGGAAGGAGCAGCCAGGCGTGGGAAGCGGCGAGATCCTCGGGCTGGGGGTGCCCACGTTTGC TACCTCCCACTGTGAAATCGCTGGTGCTCACAATTGTCTCTCACAGTGTATGTGATTTTTTTAAGGAAAAAAAAAAATCCCTATTTAAGA TTCTGAAGGTGCTACCATTATTTTGCCACAGACTTTGAAGAAACTTTTGGATGTGGGGCATCATCCGCATCTTTCTCTCTCCTCCAAATG ACAAAGTTTGGGGAATTTTTGAATTTTCCTAGCATCGCCCTTGTGCTCATCAGGTAATCTGCTAAGGAGGAAAAAAGAAAAGAAAAAAGG AAAAAAAAAAAAAAAAAGCAAAACAAAAACAAAAACAAAAACCCTACCAGAAACCAGAAGTAGAGAGATTTACCATATAACTTATGGACT TTGAAATGTCTGTCCTTTTAAGGCAGCAGGGAGGCCTGGGTGCGAAGCATGTTGGCTTGGCCCTTCACGGTCCTGGAGGGAGGTGAGGCT GGCCTTGGAAGGCGTGCCCTGGAGAGGTCTTGGGTGAAAACTTGACCTTGAAGAAACCAATCACAAAAGCGGCGTTGGGTCAGGGCTAGG CTTAGAGGTGAAGCATCAACATGGAACCATCTCAGGAAGCCGCATCGCCTCTTCCGAGGTCCTCACTTCCAGGAGCCTGTCCTTGCAAGA TGCAATCATCGTTCCTGCTTTTTCATTGTCATTAAATTCTGTAGAAACCCATTGTCATTAGCTCCAAGTGTAAATTTGGGTCAAGGAGAC AGAATAATAATGGGAATCTCGGAGTTCGACACCATAGTGACGTTCAGCGTCCTCTGAATTGTGCTACATCAGCGAACAAGTCGGCGCTTG AATTGGATTTTGAGGTTATTTTAACCATGGAATTATTTTTATAGAAGGGGAAAATGTATGTGAAAGTCTCTATTTGTGTATTTCTCTCCT AAAGTTGTGTCTCTTTGGGAATTGGATTTGATTTTTATTATTTAATACCTCACTTTGGCCCGTCCCCCCTCCCAACACTTCTGTATCCTC GCCCTGCCGCCCCAGCCTGGACGCTCTGCGTGGAAGTGCGTGTTTGTAGCAGCTCGGGCCTCATCTCAGCGCTCGGATCCCTCCTGCTGC CAGAATCCACTGGCCTCTGTCTCATTCTTGGGTTTTCCTGCTGTCTTCGTTTACGTCTCTGTCCACATGTCAGTGTATTAAAACCCCAAT >97933_97933_5_VAV2-COL27A1_VAV2_chr9_136804225_ENST00000371851_COL27A1_chr9_117047004_ENST00000356083_length(amino acids)=697AA_BP=194 MGQPARSPAPALSPARARAGCPAAAALWLEHCPEPVGPAGAMEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHN LSPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRNSELFDPFDLFDVRDFGKGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPG PPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVG RQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPG SKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPG PPGPPGGPIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDG TYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNG -------------------------------------------------------------- >97933_97933_6_VAV2-COL27A1_VAV2_chr9_136804225_ENST00000406606_COL27A1_chr9_117047004_ENST00000356083_length(transcript)=3790nt_BP=324nt GCCATGGAGCAGTGGCGGCAGTGCGGCCGCTGGCTCATCGATTGCAAGGTCCTGCCGCCCAACCACCGGGTGGTGTGGCCCTCGGCCGTG GTCTTCGACCTGGCGCAGGCGCTGCGCGACGGGGTCCTTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGAC ATCAACTTCCGGCCGCAGATGTCCCAGTTTCTGTGTTTGAAGAACATACGCACCTTCCTGAAAGTCTGCCACGATAAATTTGGATTAAGG AACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATGTGCGAGACTTTGGAAAGGGACACAAAGGCATTGTGGGACCCCTTGGACCTCCT GGACCAAAAGGCGAAAAGGGGGAGCAGGGCGAGGACGGCAAGGCTGAGGGGCCCCCTGGGCCACCTGGAGATCGGGGCCCTGTGGGTGAT CGAGGAGACCGCGGGGAACCGGGAGACCCTGGGTACCCTGGACAGGAGGGTGTGCAAGGCCTCCGTGGAAAGCCAGGCCAGCAGGGCCAA CCCGGGCATCCGGGACCCCGGGGGTGGCCGGGACCCAAAGGATCGAAAGGCGCAGAGGGACCAAAGGGAAAGCAAGGCAAGGCAGGGGCC CCAGGCCGGAGGGGGGTCCAGGGCCTGCAGGGGCTGCCAGGGCCCCGGGGCGTGGTGGGGAGACAGGGCCTCGAGGGCATCGCTGGACCA GATGGGCTTCCTGGCAGGGACGGGCAAGCAGGACAGCAGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCATGGGCCCTGCTGGGAAG AGAGGAAATCCAGGTGTGGCCGGCTTACCTGGAGCACAGGGACCCCCAGGATTCAAGGGTGAGAGTGGGTTACCCGGACAGCTGGGTCCC CCTGGCAAGCGAGGAACAGAGGGCAGAACGGGGCTCCCTGGAAACCAGGGGGAGCCTGGGTCCAAAGGCCAGCCGGGCGACTCTGGCGAG ATGGGCTTCCCAGGAATGGCAGGTCTCTTCGGACCCAAGGGCCCGCCTGGAGACATTGGCTTCAAAGGCATCCAGGGCCCTCGGGGGCCA CCTGGCTTGATGGGAAAGGAAGGCATCGTCGGGCCCCTCGGAATCCTGGGACCTTCGGGACTCCCGGGTCCGAAGGGTGACAAAGGCAGC CGTGGGGACTGGGGATTGCAAGGTCCGAGGGGTCCTCCCGGCCCCAGAGGGCGGCCCGGCCCCCCGGGTCCTCCAGGGGGTCCTATCCAA TTGCAACAAGATGATCTTGGGGCAGCTTTCCAGACGTGGATGGACACCAGTGGAGCACTCAGGCCAGAGAGTTACAGCTATCCAGACCGG CTGGTGCTGGACCAGGGAGGAGAGATCTTTAAAACCTTACACTACCTCAGCAACCTCATCCAGAGCATTAAGACGCCCCTGGGCACCAAA GAGAACCCCGCCCGGGTCTGCAGGGACCTCATGGACTGTGAGCAGAAGATGGTGGATGGTACCTACTGGGTGGATCCAAACCTTGGCTGC TCCTCTGACACCATCGAGGTCTCCTGCAACTTCACTCATGGTGGACAGACGTGTCTCAAGCCCATCACGGCCTCCAAGGTCGAGTTTGCC ATCAGCCGGGTCCAGATGAATTTCCTGCACCTGCTAAGCTCCGAGGTGACCCAGCACATCACCATCCACTGCCTTAACATGACCGTGTGG CAGGAGGGCACTGGGCAGACCCCAGCCAAGCAGGCCGTACGCTTCCGGGCCTGGAATGGACAGATTTTTGAAGCTGGGGGTCAGTTCCGG CCCGAGGTGTCCATGGATGGCTGCAAGGTCCAAGATGGCCGCTGGCATCAGACACTCTTCACCTTCCGGACCCAAGACCCCCAACAGCTG CCCATCATCAGTGTGGACAACCTCCCTCCTGCCTCATCAGGGAAGCAGTACCGCCTGGAAGTTGGACCTGCGTGCTTCCTCTGACCTCTG ACCTCGTGGCCACTCTAGGCCTCACGGAGGAGGGAAGAGGAAGAGGCAAGGGGAGGGTACTGAGGGGCAGATGGCTCCAGGAGAGGCAGC TCCCCTGCCCAAGGGTCCTTGGGCAGACCCCAGCTGTTGTCTGCCCAGTAGAAGTGGGTGGGGGTAGGAGGGGATAGGGTGTCCTTGGGA ACAATGGATCCCAGCTTAGCCCCAAAGACCAACCAAAGAGCCAGCCAGAGTAAGCTGGACCTGCAACCTGCCTGAGCCCCGTGGCCTCTC AGCTCTGCGGCCACCCCGTTCCCTCCCCAGCTTCCTGCCCAAAGAGCCCCACATTCAAGCCAACTTGAGGGAAGGGGGCGTCTCGTCAGC TGGTCCCTGCTAGGGAGCTATTGATGTGCAATATTAGAAAGGAGACATGAAAAAAGGAGAAAAGGAAAGACAGAAGTGTATATATATATT ATTTAAACAAACAAAAAGAAGGTGCGTTACTATTTTTTTTTCACCCGGGAAAGAGGTGAGAGGATGGGAAGGAGCAGCCAGGCGTGGGAA GCGGCGAGATCCTCGGGCTGGGGGTGCCCACGTTTGCTACCTCCCACTGTGAAATCGCTGGTGCTCACAATTGTCTCTCACAGTGTATGT GATTTTTTTAAGGAAAAAAAAAAATCCCTATTTAAGATTCTGAAGGTGCTACCATTATTTTGCCACAGACTTTGAAGAAACTTTTGGATG TGGGGCATCATCCGCATCTTTCTCTCTCCTCCAAATGACAAAGTTTGGGGAATTTTTGAATTTTCCTAGCATCGCCCTTGTGCTCATCAG GTAATCTGCTAAGGAGGAAAAAAGAAAAGAAAAAAGGAAAAAAAAAAAAAAAAAGCAAAACAAAAACAAAAACAAAAACCCTACCAGAAA CCAGAAGTAGAGAGATTTACCATATAACTTATGGACTTTGAAATGTCTGTCCTTTTAAGGCAGCAGGGAGGCCTGGGTGCGAAGCATGTT GGCTTGGCCCTTCACGGTCCTGGAGGGAGGTGAGGCTGGCCTTGGAAGGCGTGCCCTGGAGAGGTCTTGGGTGAAAACTTGACCTTGAAG AAACCAATCACAAAAGCGGCGTTGGGTCAGGGCTAGGCTTAGAGGTGAAGCATCAACATGGAACCATCTCAGGAAGCCGCATCGCCTCTT CCGAGGTCCTCACTTCCAGGAGCCTGTCCTTGCAAGATGCAATCATCGTTCCTGCTTTTTCATTGTCATTAAATTCTGTAGAAACCCATT GTCATTAGCTCCAAGTGTAAATTTGGGTCAAGGAGACAGAATAATAATGGGAATCTCGGAGTTCGACACCATAGTGACGTTCAGCGTCCT CTGAATTGTGCTACATCAGCGAACAAGTCGGCGCTTGAATTGGATTTTGAGGTTATTTTAACCATGGAATTATTTTTATAGAAGGGGAAA ATGTATGTGAAAGTCTCTATTTGTGTATTTCTCTCCTAAAGTTGTGTCTCTTTGGGAATTGGATTTGATTTTTATTATTTAATACCTCAC TTTGGCCCGTCCCCCCTCCCAACACTTCTGTATCCTCGCCCTGCCGCCCCAGCCTGGACGCTCTGCGTGGAAGTGCGTGTTTGTAGCAGC TCGGGCCTCATCTCAGCGCTCGGATCCCTCCTGCTGCCAGAATCCACTGGCCTCTGTCTCATTCTTGGGTTTTCCTGCTGTCTTCGTTTA CGTCTCTGTCCACATGTCAGTGTATTAAAACCCCAATGGGTTCCGTTTCTCCTTTTCCCCTCTGGATTTTAAATAAATATTTAAAACTGA >97933_97933_6_VAV2-COL27A1_VAV2_chr9_136804225_ENST00000406606_COL27A1_chr9_117047004_ENST00000356083_length(amino acids)=656AA_BP=153 MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRN SELFDPFDLFDVRDFGKGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQP GHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKR GNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPP GLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRL VLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAI SRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSMDGCKVQDGRWHQTLFTFRTQDPQQLP -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for VAV2-COL27A1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for VAV2-COL27A1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for VAV2-COL27A1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |