FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:VMP1-RNFT1 (FusionGDB2 ID:98212)

Fusion Gene Summary for VMP1-RNFT1

check button Fusion gene summary
Fusion gene informationFusion gene name: VMP1-RNFT1
Fusion gene ID: 98212
HgeneTgene
Gene symbol

VMP1

RNFT1

Gene ID

81671

51136

Gene namevacuole membrane protein 1ring finger protein, transmembrane 1
SynonymsEPG3|TANGO5|TMEM49PTD016
Cytomap

17q23.1

17q23.1

Type of geneprotein-codingprotein-coding
Descriptionvacuole membrane protein 1ectopic P-granules autophagy protein 3 homologtransmembrane protein 49transport and golgi organization 5 homologE3 ubiquitin-protein ligase RNFT1RING finger and transmembrane domain-containing protein 1
Modification date2020032720200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000262291, ENST00000536180, 
ENST00000537567, ENST00000539763, 
ENST00000545362, ENST00000588617, 
ENST00000442346, ENST00000305783, 
Fusion gene scores* DoF score34 X 17 X 12=69368 X 7 X 6=336
# samples 3812
** MAII scorelog2(38/6936*10)=-4.19003257489089
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(12/336*10)=-1.48542682717024
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: VMP1 [Title/Abstract] AND RNFT1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointVMP1(57851246)-RNFT1(58031507), # samples:4
RNFT1(58039901)-VMP1(57917129), # samples:2
Anticipated loss of major functional domain due to fusion event.RNFT1-VMP1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneRNFT1

GO:0051865

protein autoubiquitination

27485036


check buttonFusion gene breakpoints across VMP1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across RNFT1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-A2-A1FW-01AVMP1chr17

57851245

+RNFT1chr17

58031506

-
ChimerDB4BRCATCGA-A2-A1FW-01AVMP1chr17

57851246

-RNFT1chr17

58031507

-
ChimerDB4BRCATCGA-A2-A1FW-01AVMP1chr17

57851246

+RNFT1chr17

58031507

-
ChimerDB4BRCATCGA-A2-A1FWVMP1chr17

57851246

+RNFT1chr17

58031507

-


Top

Fusion Gene ORF analysis for VMP1-RNFT1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000262291ENST00000442346VMP1chr17

57851245

+RNFT1chr17

58031506

-
5CDS-3UTRENST00000262291ENST00000442346VMP1chr17

57851246

+RNFT1chr17

58031507

-
5CDS-3UTRENST00000536180ENST00000442346VMP1chr17

57851245

+RNFT1chr17

58031506

-
5CDS-3UTRENST00000536180ENST00000442346VMP1chr17

57851246

+RNFT1chr17

58031507

-
5CDS-3UTRENST00000537567ENST00000442346VMP1chr17

57851245

+RNFT1chr17

58031506

-
5CDS-3UTRENST00000537567ENST00000442346VMP1chr17

57851246

+RNFT1chr17

58031507

-
5CDS-3UTRENST00000539763ENST00000442346VMP1chr17

57851245

+RNFT1chr17

58031506

-
5CDS-3UTRENST00000539763ENST00000442346VMP1chr17

57851246

+RNFT1chr17

58031507

-
5CDS-3UTRENST00000545362ENST00000442346VMP1chr17

57851245

+RNFT1chr17

58031506

-
5CDS-3UTRENST00000545362ENST00000442346VMP1chr17

57851246

+RNFT1chr17

58031507

-
In-frameENST00000262291ENST00000305783VMP1chr17

57851245

+RNFT1chr17

58031506

-
In-frameENST00000262291ENST00000305783VMP1chr17

57851246

+RNFT1chr17

58031507

-
In-frameENST00000536180ENST00000305783VMP1chr17

57851245

+RNFT1chr17

58031506

-
In-frameENST00000536180ENST00000305783VMP1chr17

57851246

+RNFT1chr17

58031507

-
In-frameENST00000537567ENST00000305783VMP1chr17

57851245

+RNFT1chr17

58031506

-
In-frameENST00000537567ENST00000305783VMP1chr17

57851246

+RNFT1chr17

58031507

-
In-frameENST00000539763ENST00000305783VMP1chr17

57851245

+RNFT1chr17

58031506

-
In-frameENST00000539763ENST00000305783VMP1chr17

57851246

+RNFT1chr17

58031507

-
In-frameENST00000545362ENST00000305783VMP1chr17

57851245

+RNFT1chr17

58031506

-
In-frameENST00000545362ENST00000305783VMP1chr17

57851246

+RNFT1chr17

58031507

-
intron-3CDSENST00000588617ENST00000305783VMP1chr17

57851245

+RNFT1chr17

58031506

-
intron-3CDSENST00000588617ENST00000305783VMP1chr17

57851246

+RNFT1chr17

58031507

-
intron-3UTRENST00000588617ENST00000442346VMP1chr17

57851245

+RNFT1chr17

58031506

-
intron-3UTRENST00000588617ENST00000442346VMP1chr17

57851246

+RNFT1chr17

58031507

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000262291VMP1chr1757851246+ENST00000305783RNFT1chr1758031507-199810242531260335
ENST00000537567VMP1chr1757851246+ENST00000305783RNFT1chr1758031507-1613639327875182
ENST00000539763VMP1chr1757851246+ENST00000305783RNFT1chr1758031507-1677703238939233
ENST00000536180VMP1chr1757851246+ENST00000305783RNFT1chr1758031507-1707733310969219
ENST00000545362VMP1chr1757851246+ENST00000305783RNFT1chr1758031507-157359941835264
ENST00000262291VMP1chr1757851245+ENST00000305783RNFT1chr1758031506-199810242531260335
ENST00000537567VMP1chr1757851245+ENST00000305783RNFT1chr1758031506-1613639327875182
ENST00000539763VMP1chr1757851245+ENST00000305783RNFT1chr1758031506-1677703238939233
ENST00000536180VMP1chr1757851245+ENST00000305783RNFT1chr1758031506-1707733310969219
ENST00000545362VMP1chr1757851245+ENST00000305783RNFT1chr1758031506-157359941835264

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000262291ENST00000305783VMP1chr1757851246+RNFT1chr1758031507-0.0016701420.9983298
ENST00000537567ENST00000305783VMP1chr1757851246+RNFT1chr1758031507-0.002200680.99779934
ENST00000539763ENST00000305783VMP1chr1757851246+RNFT1chr1758031507-0.175441880.8245582
ENST00000536180ENST00000305783VMP1chr1757851246+RNFT1chr1758031507-0.0016210950.9983789
ENST00000545362ENST00000305783VMP1chr1757851246+RNFT1chr1758031507-0.0012257010.99877423
ENST00000262291ENST00000305783VMP1chr1757851245+RNFT1chr1758031506-0.0016701420.9983298
ENST00000537567ENST00000305783VMP1chr1757851245+RNFT1chr1758031506-0.002200680.99779934
ENST00000539763ENST00000305783VMP1chr1757851245+RNFT1chr1758031506-0.175441880.8245582
ENST00000536180ENST00000305783VMP1chr1757851245+RNFT1chr1758031506-0.0016210950.9983789
ENST00000545362ENST00000305783VMP1chr1757851245+RNFT1chr1758031506-0.0012257010.99877423

Top

Fusion Genomic Features for VMP1-RNFT1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for VMP1-RNFT1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:57851246/chr17:58031507)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+7122_43238407.0Topological domainCytoplasmic
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+71265_77238407.0Topological domainExtracellular
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+71299_109238407.0Topological domainCytoplasmic
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+7122_43238407.0Topological domainCytoplasmic
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+71265_77238407.0Topological domainExtracellular
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+71299_109238407.0Topological domainCytoplasmic
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712110_130238407.0TransmembraneHelical
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+71244_64238407.0TransmembraneHelical
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+71278_98238407.0TransmembraneHelical
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712110_130238407.0TransmembraneHelical
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+71244_64238407.0TransmembraneHelical
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+71278_98238407.0TransmembraneHelical
TgeneRNFT1chr17:57851245chr17:58031506ENST0000030578369368_419357436.0RegionRequired for ubiquitin ligase activity and for protection against ER stress-induced cell death
TgeneRNFT1chr17:57851246chr17:58031507ENST0000030578369368_419357436.0RegionRequired for ubiquitin ligase activity and for protection against ER stress-induced cell death
TgeneRNFT1chr17:57851245chr17:58031506ENST0000030578369375_413357436.0Zinc fingerRING-type
TgeneRNFT1chr17:57851246chr17:58031507ENST0000030578369375_413357436.0Zinc fingerRING-type

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712173_316238407.0RegionVTT domain
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712173_316238407.0RegionVTT domain
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712131_250238407.0Topological domainExtracellular
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712272_273238407.0Topological domainCytoplasmic
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712295_305238407.0Topological domainExtracellular
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712327_363238407.0Topological domainCytoplasmic
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712385_406238407.0Topological domainExtracellular
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712131_250238407.0Topological domainExtracellular
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712272_273238407.0Topological domainCytoplasmic
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712295_305238407.0Topological domainExtracellular
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712327_363238407.0Topological domainCytoplasmic
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712385_406238407.0Topological domainExtracellular
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712251_271238407.0TransmembraneHelical
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712274_294238407.0TransmembraneHelical
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712306_326238407.0TransmembraneHelical
HgeneVMP1chr17:57851245chr17:58031506ENST00000262291+712364_384238407.0TransmembraneHelical
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712251_271238407.0TransmembraneHelical
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712274_294238407.0TransmembraneHelical
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712306_326238407.0TransmembraneHelical
HgeneVMP1chr17:57851246chr17:58031507ENST00000262291+712364_384238407.0TransmembraneHelical
TgeneRNFT1chr17:57851245chr17:58031506ENST0000030578369158_178357436.0TransmembraneHelical
TgeneRNFT1chr17:57851245chr17:58031506ENST0000030578369203_223357436.0TransmembraneHelical
TgeneRNFT1chr17:57851245chr17:58031506ENST0000030578369233_253357436.0TransmembraneHelical
TgeneRNFT1chr17:57851245chr17:58031506ENST0000030578369256_276357436.0TransmembraneHelical
TgeneRNFT1chr17:57851245chr17:58031506ENST0000030578369298_318357436.0TransmembraneHelical
TgeneRNFT1chr17:57851245chr17:58031506ENST0000030578369323_343357436.0TransmembraneHelical
TgeneRNFT1chr17:57851246chr17:58031507ENST0000030578369158_178357436.0TransmembraneHelical
TgeneRNFT1chr17:57851246chr17:58031507ENST0000030578369203_223357436.0TransmembraneHelical
TgeneRNFT1chr17:57851246chr17:58031507ENST0000030578369233_253357436.0TransmembraneHelical
TgeneRNFT1chr17:57851246chr17:58031507ENST0000030578369256_276357436.0TransmembraneHelical
TgeneRNFT1chr17:57851246chr17:58031507ENST0000030578369298_318357436.0TransmembraneHelical
TgeneRNFT1chr17:57851246chr17:58031507ENST0000030578369323_343357436.0TransmembraneHelical


Top

Fusion Gene Sequence for VMP1-RNFT1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>98212_98212_1_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000262291_RNFT1_chr17_58031506_ENST00000305783_length(transcript)=1998nt_BP=1024nt
GACAAGTTCCGGATCAAGAATCACAAAGCGAGCAGTCATTCTTCCTCTTGCCACACCCACAGGGCCCGCACTAAGAGCCTAACTGAAATC
CCGCGAGGATCAACCGAGCTCGCCGAAAGGAGGGAGGAACGTATCCCTTCTGGAGGCTGTCTCAGGGGGCAGAGGGACCGGACCGGAAGT
GACGTGAGCGGGTTCCGGTTGTCTGGAGCCCAGCGGCGGGTGTGAGAGTCCGTAAGGAGCAGCTTCCAGGATCCTGAGATCCGGAGCAGC
CGGGGTCGGAGCGGCTCCTCAAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATGAACAA
GGAACATCATAATGGAAATTTCACAGACCCCTCTTCAGTGAATGAAAAGAAGAGGAGGGAGCGGGAAGAAAGGCAGAATATTGTCCTGTG
GAGACAGCCGCTCATTACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAAGGAATGGACCTCAAAATTATGGCATCGTCAAAG
CATTGTGGTGTCTTTTTTACTGCTGCTTGCTGTGCTTATAGCTACGTATTATGTTGAAGGAGTGCATCAACAGTATGTGCAACGTATAGA
GAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGCTTGGAACAGGGCTGCACACCTTTCTGCTTTA
TCTGGGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTAT
TTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGG
TACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATT
TGAAGAGATGCTGGAACATGCAGAGTCTGCACAAAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTC
AATATGTCAAGCTGAATTTCAGAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGA
GAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTA
AGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTAC
CAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATA
TATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTT
CTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAG
AATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCT
TAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTG
AGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGAC
GTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTGTATAGTACCATGGAGTATCTCGAAGTAACTATTAAAATA

>98212_98212_1_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000262291_RNFT1_chr17_58031506_ENST00000305783_length(amino acids)=335AA_BP=257
MRSGAAGVGAAPQELLIYEMAENGKNCDQRRVAMNKEHHNGNFTDPSSVNEKKRREREERQNIVLWRQPLITLQYFSLEILVILKEWTSK
LWHRQSIVVSFLLLLAVLIATYYVEGVHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPP
YPDQIICPDEEGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQSYGVAASKRQCSD

--------------------------------------------------------------
>98212_98212_2_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000536180_RNFT1_chr17_58031506_ENST00000305783_length(transcript)=1707nt_BP=733nt
GTCTGGAGCCCAGCGGCGGGTGTGAGAGTCCGTAAGGAGCAGCTTCCAGGATCCTGAGATCCGGAGCAGCCGGGGTCGGAGCGGCTCCTC
AAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATGAACAAGGAACATCATAATGGAAATT
TCACAGACCCCTCTTCAGTGAATGAAAAGAAGAGGAGGGAGCGGGAAGAAAGGCAGAATATTGTCCTGTGGAGACAGCCGCTCATTACCT
TGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAAGGAATGGACCTCAAATATGTGCAACGTATAGAGAAACAGTTTCTTTTGTATGC
CTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGCTTGGAACAGGGCTGCACACCTTTCTGCTTTATCTGGGTCCACATATAGCCTC
AGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCAC
TGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCC
TCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGC
AGAGTCTGCACAAAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTCA
GAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAG
AACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGC
CACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGG
TTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATG
TATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCA
ATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTA
AGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGT
ATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTATT
GTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCAT

>98212_98212_2_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000536180_RNFT1_chr17_58031506_ENST00000305783_length(amino acids)=219AA_BP=141
MDLKYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGTISLWSIISKV
RIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCE

--------------------------------------------------------------
>98212_98212_3_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000537567_RNFT1_chr17_58031506_ENST00000305783_length(transcript)=1613nt_BP=639nt
GTGAGCGGGTTCCGGTTGTCTGGAGCCCAGCGGCGGGTGTGAGAGTCCGTAAGGAGCAGCTTCCAGGATCCTGAGATCCGGAGCAGCCGG
GGTCGGAGCGGCTCCTCAAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATGAACAAGGA
ACATCATAATGGAAATTTCACAGACCCCTCTTCAGTGAATGAAAAGAAGAGGAGGGAGCGGGAAGAAAGGCAGAATATTGTCCTGTGGAG
ACAGCCGCTCATTACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAAGGAATGGACCTCAAAGGTCCACATATAGCCTCAGTT
ACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAA
GGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCA
TATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAG
TCTGCACAAAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTCAGAAG
CCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAGAACT
GTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGCCACA
AAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGGTTTT
AGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATGTATA
TGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCAATTT
GAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTAAGAT
ACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGTATTT
TTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTATTGTAT
TATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCATCAGC

>98212_98212_3_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000537567_RNFT1_chr17_58031506_ENST00000305783_length(amino acids)=182AA_BP=104
MDLKGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEY
QEFEEMLEHAESAQSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHINKWKDGATSSHLQ

--------------------------------------------------------------
>98212_98212_4_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000539763_RNFT1_chr17_58031506_ENST00000305783_length(transcript)=1677nt_BP=703nt
GAGCGGGTTCCGGTTGTCTGGAGCCCAGCGGCGGGTGTGAGAGTCCGTAAGGAGCAGCTTCCAGGATCCTGAGATCCGGAGCAGCCGGGG
TCGGAGCGGCTCCTCAAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATGAACAAGGAAC
ATCATAATGGAAATTTCACAGATTATGGCATCGTCAAAGCATTGTGGTGTCTTTTTTACTGCTGCTTGCTGTGCTTATAGCTACGTATTA
TGTTGAAGGAGTGCATCAACAGTATGTGCAACGTATAGAGAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTC
TGTTGGGCTTGGAACAGGGCTGCACACCTTTCTGCTTTATCTGGGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTC
AGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCAT
CTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCT
CTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAAGTTATGGAGTGGCTGC
CAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTCAGAAGCCAATTCTTCTCATTTGTCAGCATAT
ATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATG
GAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAAT
GACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTC
ACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTAT
TTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGA
ACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTG
TTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTAT
TTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATA
AGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTG

>98212_98212_4_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000539763_RNFT1_chr17_58031506_ENST00000305783_length(amino acids)=233AA_BP=155
MLLAVLIATYYVEGVHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEG
TEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQSYGVAASKRQCSDVDDICSICQAEF

--------------------------------------------------------------
>98212_98212_5_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000545362_RNFT1_chr17_58031506_ENST00000305783_length(transcript)=1573nt_BP=599nt
GATCCGGAGCAGCCGGGGTCGGAGCGGCTCCTCAAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTG
TAGCAATGAACAAGGAACATCATAATGGAAATTTCACAGACCCCTCTTCAGTGAATGAAAAGAAGAGGAGGGAGCGGGAAGAAAGGCAGA
ATATTGTCCTGTGGAGACAGCCGCTCATTACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAAGGAATGGACCTCAAAATTAT
GGCATCGTCAAAGCATTGTGGTGTCTTTTTTACTGCTGCTTGCTGTGCTTATAGCTACGTATTATGTTGAAGGAGTGCATCAACAGTATG
TGCAACGTATAGAGAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGCTTGGAACAGGGCTGCACA
CCTTTCTGCTTTATCTGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAAC
CAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAAGTTATGGAGTGGCTGCCAGCAAGAGACAGT
GTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTCAGAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGT
GCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCA
CTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGG
CATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAA
TGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTG
CAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTT
TCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTT
TTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACAT
TTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATG
ATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTGTATAGTACCATGGA

>98212_98212_5_VMP1-RNFT1_VMP1_chr17_57851245_ENST00000545362_RNFT1_chr17_58031506_ENST00000305783_length(amino acids)=264AA_BP=186
MIYEMAENGKNCDQRRVAMNKEHHNGNFTDPSSVNEKKRREREERQNIVLWRQPLITLQYFSLEILVILKEWTSKLWHRQSIVVSFLLLL
AVLIATYYVEGVHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLE

--------------------------------------------------------------
>98212_98212_6_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000262291_RNFT1_chr17_58031507_ENST00000305783_length(transcript)=1998nt_BP=1024nt
GACAAGTTCCGGATCAAGAATCACAAAGCGAGCAGTCATTCTTCCTCTTGCCACACCCACAGGGCCCGCACTAAGAGCCTAACTGAAATC
CCGCGAGGATCAACCGAGCTCGCCGAAAGGAGGGAGGAACGTATCCCTTCTGGAGGCTGTCTCAGGGGGCAGAGGGACCGGACCGGAAGT
GACGTGAGCGGGTTCCGGTTGTCTGGAGCCCAGCGGCGGGTGTGAGAGTCCGTAAGGAGCAGCTTCCAGGATCCTGAGATCCGGAGCAGC
CGGGGTCGGAGCGGCTCCTCAAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATGAACAA
GGAACATCATAATGGAAATTTCACAGACCCCTCTTCAGTGAATGAAAAGAAGAGGAGGGAGCGGGAAGAAAGGCAGAATATTGTCCTGTG
GAGACAGCCGCTCATTACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAAGGAATGGACCTCAAAATTATGGCATCGTCAAAG
CATTGTGGTGTCTTTTTTACTGCTGCTTGCTGTGCTTATAGCTACGTATTATGTTGAAGGAGTGCATCAACAGTATGTGCAACGTATAGA
GAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGCTTGGAACAGGGCTGCACACCTTTCTGCTTTA
TCTGGGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTAT
TTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGG
TACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATT
TGAAGAGATGCTGGAACATGCAGAGTCTGCACAAAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTC
AATATGTCAAGCTGAATTTCAGAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGA
GAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTA
AGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTAC
CAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATA
TATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTT
CTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAG
AATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCT
TAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTG
AGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGAC
GTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTGTATAGTACCATGGAGTATCTCGAAGTAACTATTAAAATA

>98212_98212_6_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000262291_RNFT1_chr17_58031507_ENST00000305783_length(amino acids)=335AA_BP=257
MRSGAAGVGAAPQELLIYEMAENGKNCDQRRVAMNKEHHNGNFTDPSSVNEKKRREREERQNIVLWRQPLITLQYFSLEILVILKEWTSK
LWHRQSIVVSFLLLLAVLIATYYVEGVHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPP
YPDQIICPDEEGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQSYGVAASKRQCSD

--------------------------------------------------------------
>98212_98212_7_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000536180_RNFT1_chr17_58031507_ENST00000305783_length(transcript)=1707nt_BP=733nt
GTCTGGAGCCCAGCGGCGGGTGTGAGAGTCCGTAAGGAGCAGCTTCCAGGATCCTGAGATCCGGAGCAGCCGGGGTCGGAGCGGCTCCTC
AAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATGAACAAGGAACATCATAATGGAAATT
TCACAGACCCCTCTTCAGTGAATGAAAAGAAGAGGAGGGAGCGGGAAGAAAGGCAGAATATTGTCCTGTGGAGACAGCCGCTCATTACCT
TGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAAGGAATGGACCTCAAATATGTGCAACGTATAGAGAAACAGTTTCTTTTGTATGC
CTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGCTTGGAACAGGGCTGCACACCTTTCTGCTTTATCTGGGTCCACATATAGCCTC
AGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCAC
TGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCC
TCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGC
AGAGTCTGCACAAAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTCA
GAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAG
AACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGC
CACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGG
TTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATG
TATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCA
ATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTA
AGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGT
ATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTATT
GTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCAT

>98212_98212_7_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000536180_RNFT1_chr17_58031507_ENST00000305783_length(amino acids)=219AA_BP=141
MDLKYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGTISLWSIISKV
RIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCE

--------------------------------------------------------------
>98212_98212_8_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000537567_RNFT1_chr17_58031507_ENST00000305783_length(transcript)=1613nt_BP=639nt
GTGAGCGGGTTCCGGTTGTCTGGAGCCCAGCGGCGGGTGTGAGAGTCCGTAAGGAGCAGCTTCCAGGATCCTGAGATCCGGAGCAGCCGG
GGTCGGAGCGGCTCCTCAAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATGAACAAGGA
ACATCATAATGGAAATTTCACAGACCCCTCTTCAGTGAATGAAAAGAAGAGGAGGGAGCGGGAAGAAAGGCAGAATATTGTCCTGTGGAG
ACAGCCGCTCATTACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAAGGAATGGACCTCAAAGGTCCACATATAGCCTCAGTT
ACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAA
GGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCA
TATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAG
TCTGCACAAAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTCAGAAG
CCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAGAACT
GTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGCCACA
AAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGGTTTT
AGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATGTATA
TGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCAATTT
GAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTAAGAT
ACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGTATTT
TTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTATTGTAT
TATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCATCAGC

>98212_98212_8_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000537567_RNFT1_chr17_58031507_ENST00000305783_length(amino acids)=182AA_BP=104
MDLKGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEY
QEFEEMLEHAESAQSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHINKWKDGATSSHLQ

--------------------------------------------------------------
>98212_98212_9_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000539763_RNFT1_chr17_58031507_ENST00000305783_length(transcript)=1677nt_BP=703nt
GAGCGGGTTCCGGTTGTCTGGAGCCCAGCGGCGGGTGTGAGAGTCCGTAAGGAGCAGCTTCCAGGATCCTGAGATCCGGAGCAGCCGGGG
TCGGAGCGGCTCCTCAAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATGAACAAGGAAC
ATCATAATGGAAATTTCACAGATTATGGCATCGTCAAAGCATTGTGGTGTCTTTTTTACTGCTGCTTGCTGTGCTTATAGCTACGTATTA
TGTTGAAGGAGTGCATCAACAGTATGTGCAACGTATAGAGAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTC
TGTTGGGCTTGGAACAGGGCTGCACACCTTTCTGCTTTATCTGGGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTC
AGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCAT
CTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCT
CTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAAGTTATGGAGTGGCTGC
CAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTCAGAAGCCAATTCTTCTCATTTGTCAGCATAT
ATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATG
GAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAAT
GACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTC
ACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTAT
TTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGA
ACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTG
TTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTAT
TTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATA
AGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTG

>98212_98212_9_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000539763_RNFT1_chr17_58031507_ENST00000305783_length(amino acids)=233AA_BP=155
MLLAVLIATYYVEGVHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEG
TEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQSYGVAASKRQCSDVDDICSICQAEF

--------------------------------------------------------------
>98212_98212_10_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000545362_RNFT1_chr17_58031507_ENST00000305783_length(transcript)=1573nt_BP=599nt
GATCCGGAGCAGCCGGGGTCGGAGCGGCTCCTCAAGAGTTACTGATCTATGAAATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTG
TAGCAATGAACAAGGAACATCATAATGGAAATTTCACAGACCCCTCTTCAGTGAATGAAAAGAAGAGGAGGGAGCGGGAAGAAAGGCAGA
ATATTGTCCTGTGGAGACAGCCGCTCATTACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAAGGAATGGACCTCAAAATTAT
GGCATCGTCAAAGCATTGTGGTGTCTTTTTTACTGCTGCTTGCTGTGCTTATAGCTACGTATTATGTTGAAGGAGTGCATCAACAGTATG
TGCAACGTATAGAGAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGCTTGGAACAGGGCTGCACA
CCTTTCTGCTTTATCTGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAAC
CAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAAGTTATGGAGTGGCTGCCAGCAAGAGACAGT
GTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTCAGAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGT
GCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCA
CTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGG
CATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAA
TGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTG
CAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTT
TCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTT
TTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACAT
TTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATG
ATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTGTATAGTACCATGGA

>98212_98212_10_VMP1-RNFT1_VMP1_chr17_57851246_ENST00000545362_RNFT1_chr17_58031507_ENST00000305783_length(amino acids)=264AA_BP=186
MIYEMAENGKNCDQRRVAMNKEHHNGNFTDPSSVNEKKRREREERQNIVLWRQPLITLQYFSLEILVILKEWTSKLWHRQSIVVSFLLLL
AVLIATYYVEGVHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLE

--------------------------------------------------------------

Top

Fusion Gene PPI Analysis for VMP1-RNFT1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for VMP1-RNFT1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for VMP1-RNFT1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource