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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:VPS28-SF3A1 (FusionGDB2 ID:98358) |
Fusion Gene Summary for VPS28-SF3A1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: VPS28-SF3A1 | Fusion gene ID: 98358 | Hgene | Tgene | Gene symbol | VPS28 | SF3A1 | Gene ID | 51160 | 10291 |
Gene name | VPS28 subunit of ESCRT-I | splicing factor 3a subunit 1 | |
Synonyms | - | PRP21|PRPF21|SAP114|SF3A120 | |
Cytomap | 8q24.3 | 22q12.2 | |
Type of gene | protein-coding | protein-coding | |
Description | vacuolar protein sorting-associated protein 28 homologESCRT-I complex subunit VPS28VPS28, ESCRT-I subunitvacuolar protein sorting 28 homologvacuolar protein sorting 28-like proteinyeast class E protein Vps28p homolog | splicing factor 3A subunit 1SAP 114pre-mRNA processing 21pre-mRNA splicing factor SF3a (120 kDa subunit)spliceosome-associated protein 114splicing factor 3 subunit 1splicing factor 3a, subunit 1, 120kDsplicing factor 3a, subunit 1, 120kDa | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000377348, ENST00000529182, ENST00000292510, ENST00000526054, ENST00000526734, | ENST00000215793, ENST00000439242, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 7 X 6 X 4=168 |
# samples | 2 | 7 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(7/168*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: VPS28 [Title/Abstract] AND SF3A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | VPS28(145649000)-SF3A1(30742508), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | VPS28-SF3A1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. VPS28-SF3A1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | VPS28 | GO:0031397 | negative regulation of protein ubiquitination | 18077552 |
Tgene | SF3A1 | GO:0000398 | mRNA splicing, via spliceosome | 10882114|29360106 |
Tgene | SF3A1 | GO:1903241 | U2-type prespliceosome assembly | 10882114|11533230 |
Fusion gene breakpoints across VPS28 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across SF3A1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | PRAD | TCGA-EJ-7783-01A | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
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Fusion Gene ORF analysis for VPS28-SF3A1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000377348 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
Frame-shift | ENST00000377348 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
Frame-shift | ENST00000529182 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
Frame-shift | ENST00000529182 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
In-frame | ENST00000292510 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
In-frame | ENST00000292510 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
In-frame | ENST00000526054 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
In-frame | ENST00000526054 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
intron-3CDS | ENST00000526734 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
intron-3CDS | ENST00000526734 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000526054 | VPS28 | chr8 | 145649000 | - | ENST00000215793 | SF3A1 | chr22 | 30742508 | - | 5695 | 892 | 740 | 3088 | 782 |
ENST00000526054 | VPS28 | chr8 | 145649000 | - | ENST00000439242 | SF3A1 | chr22 | 30742508 | - | 5498 | 892 | 740 | 2893 | 717 |
ENST00000292510 | VPS28 | chr8 | 145649000 | - | ENST00000215793 | SF3A1 | chr22 | 30742508 | - | 5747 | 944 | 792 | 3140 | 782 |
ENST00000292510 | VPS28 | chr8 | 145649000 | - | ENST00000439242 | SF3A1 | chr22 | 30742508 | - | 5550 | 944 | 792 | 2945 | 717 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000526054 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - | 0.001977884 | 0.9980221 |
ENST00000526054 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - | 0.001141279 | 0.9988587 |
ENST00000292510 | ENST00000215793 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - | 0.002004866 | 0.99799514 |
ENST00000292510 | ENST00000439242 | VPS28 | chr8 | 145649000 | - | SF3A1 | chr22 | 30742508 | - | 0.001169024 | 0.998831 |
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Fusion Genomic Features for VPS28-SF3A1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for VPS28-SF3A1 |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr8:145649000/chr22:30742508) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000292510 | - | 10 | 10 | 124_220 | 284 | 222.0 | Domain | VPS28 C-terminal |
Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000292510 | - | 10 | 10 | 13_120 | 284 | 222.0 | Domain | VPS28 N-terminal |
Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000377348 | - | 9 | 9 | 124_220 | 324 | 234.0 | Domain | VPS28 C-terminal |
Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000377348 | - | 9 | 9 | 13_120 | 324 | 234.0 | Domain | VPS28 N-terminal |
Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000526054 | - | 9 | 9 | 124_220 | 284 | 222.0 | Domain | VPS28 C-terminal |
Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000526054 | - | 9 | 9 | 13_120 | 284 | 222.0 | Domain | VPS28 N-terminal |
Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000529182 | - | 8 | 8 | 124_220 | 324 | 234.0 | Domain | VPS28 C-terminal |
Hgene | VPS28 | chr8:145649000 | chr22:30742508 | ENST00000529182 | - | 8 | 8 | 13_120 | 324 | 234.0 | Domain | VPS28 N-terminal |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 118_122 | 61 | 794.0 | Compositional bias | Note=Poly-Gln | |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 260_267 | 61 | 794.0 | Compositional bias | Note=Poly-Glu | |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 369_372 | 61 | 794.0 | Compositional bias | Note=Poly-Pro | |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 557_560 | 61 | 794.0 | Compositional bias | Note=Poly-Pro | |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 672_675 | 61 | 794.0 | Compositional bias | Note=Poly-Pro | |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 707_793 | 61 | 794.0 | Domain | Ubiquitin-like | |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 680_702 | 61 | 794.0 | Region | Required and sufficient for nuclear import | |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 166_208 | 61 | 794.0 | Repeat | Note=SURP motif 2 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 10_16 | 61 | 794.0 | Compositional bias | Note=Poly-Pro | |
Tgene | SF3A1 | chr8:145649000 | chr22:30742508 | ENST00000215793 | 1 | 16 | 52_94 | 61 | 794.0 | Repeat | Note=SURP motif 1 |
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Fusion Gene Sequence for VPS28-SF3A1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>98358_98358_1_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000292510_SF3A1_chr22_30742508_ENST00000215793_length(transcript)=5747nt_BP=944nt CGCTGACCGAGCGCACCCCGCCCCCGGCGCCATCTTCCCGACCGCGAGCCGTCCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGG ATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGCCGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCC CGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGACAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGT GTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACAAAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGC TCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGGAGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGAC GACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCACGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATG GATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGAGCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTC AGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACGACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCA GCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCCCTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTG GTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCAGCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTT GGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAAC AACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAG GAGCCGTCCGCCGCCATCCCCAAGGTCATGCAGCAGCAGCAGCAGACCACCCAGCAGCAGCTGCCCCAGAAGGTCCAAGCCCAAGTAATC CAAGAGACCATCGTGCCCAAAGAGCCTCCTCCTGAGTTTGAGTTCATTGCTGATCCTCCCTCTATCTCAGCCTTCGACTTGGATGTGGTG AAGCTGACGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTT CTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCA AAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGG AAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTC CAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTT GGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGAC CAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCT CCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCA GATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGC TGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAG CAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAG GAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAG GCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCA CCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGT ACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATG CCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATT GTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAA GATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATC AAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTC TCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCC AACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGAGAGAGGCGGGAGGAAGAAGTAGACAAGAGGA ACCTGCTGTCAAGTCCCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCCCCAGACCCAGGAGCCCCCCTGAGGCTTTGCCTTGCCTG CATATTTGTTTCGCTCTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGGTTCATTCCCCTGACCCTTTCCCCACATTGGTAAGAGTA GCTGGGTTTTCTAAGCCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATTTGAGGACATTCATTTCTTCAGCAGCCCATTAGCAACTG AGAGCCCAGGGATGTCCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGGCTAATAGAATATGGCTGATATTGTCATTAATCATTTTG TACCTTGACATGGGTTGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGTTAAATAAGACTTGTCTCGGTCACCTGTGCCCTGTCCAG ACTCGAGGCAGTGGTAACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGATTTTTGGGTTTTGTAACTAAATTCTTGCTGCCCTCATAC TTTTTATGTATTAGAATCATATTCGTATTGCCCTTTTAAAACATTGGGATCCTCCAAAGGCCTGCCCCATGTATTTAACAGTAATACAGG AAGCATGGCAGGCACCATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTCAGTGGGCGGTGGTTTCCTGCTGGCCTGGAATCACTCAT CACCTGATTGATTGGCTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGGATATGATGACGTTTCTTTAAAATGTATGTATTTAACAA ATACTTAATTGTATTAAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAATTTACTCTCTACTTTTATCCATTTTATCCATTTTAACT CATGTAATCCTCATGTGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCACAGAGAACATAAGTTGCATGCCATAGTCACACACTGTG AAAGTGAAAAGAGAATGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTAAAGGCAGGCTGTTATCTTTAGAATCAAGCTATCACAGG GAGATAGGCAATGCTGTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACAATTTCCTGGTTTTAAAGCTAAGGCTGATTTTATTGGGA AGATCTCACATGTGTGTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAGTCCTTCCATTTGGACCTCCTAGCTGCCCCATCAGGTCA TCTCCAGGGCTCAGAGGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTCTCTAGTCACCACCCTGCCTCTCCCTCTCACCCAGAGTC AGTACCAGTTTTATGGCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAACTTGATTGATGGGATGTCATCCCTTATCCTGTCTGACA TTTGCCTCTGGCCTGGTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAATTTGGCTTCCTGAGGTGGGCTTTGTGGTTTGCGTCCCTA AAGTGAGCCCACTACTGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTGAGCACTACCTGGGTCTCATTCCAAGAAGGAAGAGGGTC AGGAGACCTGGGGAGTCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAGTGGGCAGTTCATGGTGTTAGGGCACTCACCCCCACAGA CTGGCAAACCCTGCAGGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGAATGCCGTTGGGTGGATTGTGAGTGAATGGGCCCTTTGA GCTGCCCTCTAGAGAGCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCTGTACTGGCTCGCTCAGATGCAGAAGCTCCATTGACCAT GAGGCCTTGTGAACATCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGCACTAGTTTAGGACCTGCAGCATGTAGGTAGCGTCCTAG TGTTTATAATACAAAGCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATCTCCTGAGGATTATCTGCCCCATTTTTAAAACGAGGTGG AATACCCAAGGTCATGTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCATCCCTTCCTGGGGACCACACTGCTCTGCTCCACCAGAC CACACTATGAAATAGGAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACAGGTGGTGTGGGACTTAAGTCACCATAATTTTGAAGACT TGCATGCAGAGGGCTCCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGTTCTACCCACTACTTAAGTACTTGTCATGTACTCTTAGA GGAGGCCAGTAATGATCAGAACCATTTTACTTTAAAATTAATAATATTGTATTAGAGAATATATTAAATGGTTATATTGGGTTATGTTAG GATATATACTTGAATGGAAATACATGTACTATTAGCAATCATATTTCATTTATCCCTGTAATTAGACAAGAAAGCATAATATAGCTCTAC >98358_98358_1_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000292510_SF3A1_chr22_30742508_ENST00000215793_length(amino acids)=782AA_BP=51 MRRWLLVPCPPHRPWSSTQLTVCSCLSGVCLWCQNFGGRAPPHNKDALRPSNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF KEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQR NYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVV VETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPP PETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLD IESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSKPN EIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAP RPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTL -------------------------------------------------------------- >98358_98358_2_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000292510_SF3A1_chr22_30742508_ENST00000439242_length(transcript)=5550nt_BP=944nt CGCTGACCGAGCGCACCCCGCCCCCGGCGCCATCTTCCCGACCGCGAGCCGTCCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGG ATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGCCGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCC CGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGACAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGT GTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACAAAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGC TCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGGAGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGAC GACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCACGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATG GATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGAGCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTC AGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACGACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCA GCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCCCTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTG GTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCAGCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTT GGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAAC AACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAG TTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCAC AGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAG GCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAG GAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAA GGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAA GTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTA CAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCA ACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTG TCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGG GATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGG CGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGG GATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCC AAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCA GCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCC GCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCAC GCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTT GTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCC AAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCC AACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTG AAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTAC TACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGAGAGAGGCGGGAGGAAGAAGTAGACAAGAGGAACCTGCTGTCAAGTC CCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCCCCAGACCCAGGAGCCCCCCTGAGGCTTTGCCTTGCCTGCATATTTGTTTCGCT CTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGGTTCATTCCCCTGACCCTTTCCCCACATTGGTAAGAGTAGCTGGGTTTTCTAAG CCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATTTGAGGACATTCATTTCTTCAGCAGCCCATTAGCAACTGAGAGCCCAGGGATGT CCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGGCTAATAGAATATGGCTGATATTGTCATTAATCATTTTGTACCTTGACATGGGT TGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGTTAAATAAGACTTGTCTCGGTCACCTGTGCCCTGTCCAGACTCGAGGCAGTGGT AACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGATTTTTGGGTTTTGTAACTAAATTCTTGCTGCCCTCATACTTTTTATGTATTAGA ATCATATTCGTATTGCCCTTTTAAAACATTGGGATCCTCCAAAGGCCTGCCCCATGTATTTAACAGTAATACAGGAAGCATGGCAGGCAC CATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTCAGTGGGCGGTGGTTTCCTGCTGGCCTGGAATCACTCATCACCTGATTGATTGG CTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGGATATGATGACGTTTCTTTAAAATGTATGTATTTAACAAATACTTAATTGTATT AAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAATTTACTCTCTACTTTTATCCATTTTATCCATTTTAACTCATGTAATCCTCATG TGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCACAGAGAACATAAGTTGCATGCCATAGTCACACACTGTGAAAGTGAAAAGAGAA TGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTAAAGGCAGGCTGTTATCTTTAGAATCAAGCTATCACAGGGAGATAGGCAATGCT GTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACAATTTCCTGGTTTTAAAGCTAAGGCTGATTTTATTGGGAAGATCTCACATGTGT GTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAGTCCTTCCATTTGGACCTCCTAGCTGCCCCATCAGGTCATCTCCAGGGCTCAGA GGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTCTCTAGTCACCACCCTGCCTCTCCCTCTCACCCAGAGTCAGTACCAGTTTTATG GCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAACTTGATTGATGGGATGTCATCCCTTATCCTGTCTGACATTTGCCTCTGGCCTG GTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAATTTGGCTTCCTGAGGTGGGCTTTGTGGTTTGCGTCCCTAAAGTGAGCCCACTAC TGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTGAGCACTACCTGGGTCTCATTCCAAGAAGGAAGAGGGTCAGGAGACCTGGGGAG TCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAGTGGGCAGTTCATGGTGTTAGGGCACTCACCCCCACAGACTGGCAAACCCTGCA GGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGAATGCCGTTGGGTGGATTGTGAGTGAATGGGCCCTTTGAGCTGCCCTCTAGAGA GCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCTGTACTGGCTCGCTCAGATGCAGAAGCTCCATTGACCATGAGGCCTTGTGAACA TCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGCACTAGTTTAGGACCTGCAGCATGTAGGTAGCGTCCTAGTGTTTATAATACAAA GCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATCTCCTGAGGATTATCTGCCCCATTTTTAAAACGAGGTGGAATACCCAAGGTCAT GTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCATCCCTTCCTGGGGACCACACTGCTCTGCTCCACCAGACCACACTATGAAATAG GAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACAGGTGGTGTGGGACTTAAGTCACCATAATTTTGAAGACTTGCATGCAGAGGGCT CCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGTTCTACCCACTACTTAAGTACTTGTCATGTACTCTTAGAGGAGGCCAGTAATGA TCAGAACCATTTTACTTTAAAATTAATAATATTGTATTAGAGAATATATTAAATGGTTATATTGGGTTATGTTAGGATATATACTTGAAT GGAAATACATGTACTATTAGCAATCATATTTCATTTATCCCTGTAATTAGACAAGAAAGCATAATATAGCTCTACTCATGGGTACACATA >98358_98358_2_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000292510_SF3A1_chr22_30742508_ENST00000439242_length(amino acids)=717AA_BP=51 MRRWLLVPCPPHRPWSSTQLTVCSCLSGVCLWCQNFGGRAPPHNKDALRPSNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF KEGKAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERE RKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQL DQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDP RWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQI EAIHKAKGLVPEDDTKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAP MPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVS -------------------------------------------------------------- >98358_98358_3_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000526054_SF3A1_chr22_30742508_ENST00000215793_length(transcript)=5695nt_BP=892nt CCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGGATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGC CGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCCCGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGA CAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGTGTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACA AAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGCTCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGG AGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGACGACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCA CGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATGGATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGA GCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTCAGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACG ACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCAGCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCC CTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTGGTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCA GCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTTGGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGC CTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACC GCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGGAGCCGTCCGCCGCCATCCCCAAGGTCATGCAGCAGCAGCAGCAGACCACCC AGCAGCAGCTGCCCCAGAAGGTCCAAGCCCAAGTAATCCAAGAGACCATCGTGCCCAAAGAGCCTCCTCCTGAGTTTGAGTTCATTGCTG ATCCTCCCTCTATCTCAGCCTTCGACTTGGATGTGGTGAAGCTGACGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGC TGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGT ACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTT ACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCG ACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGG GGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACA AACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAG GGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATC CCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAA TGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGG TGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTG GTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGG CTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGA TTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTT CAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTG TGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGG CCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAG CCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGG AGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGC AGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAAC AGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCC TCAAGGAGAGAGGCGGGAGGAAGAAGTAGACAAGAGGAACCTGCTGTCAAGTCCCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCC CCAGACCCAGGAGCCCCCCTGAGGCTTTGCCTTGCCTGCATATTTGTTTCGCTCTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGG TTCATTCCCCTGACCCTTTCCCCACATTGGTAAGAGTAGCTGGGTTTTCTAAGCCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATT TGAGGACATTCATTTCTTCAGCAGCCCATTAGCAACTGAGAGCCCAGGGATGTCCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGG CTAATAGAATATGGCTGATATTGTCATTAATCATTTTGTACCTTGACATGGGTTGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGT TAAATAAGACTTGTCTCGGTCACCTGTGCCCTGTCCAGACTCGAGGCAGTGGTAACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGAT TTTTGGGTTTTGTAACTAAATTCTTGCTGCCCTCATACTTTTTATGTATTAGAATCATATTCGTATTGCCCTTTTAAAACATTGGGATCC TCCAAAGGCCTGCCCCATGTATTTAACAGTAATACAGGAAGCATGGCAGGCACCATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTC AGTGGGCGGTGGTTTCCTGCTGGCCTGGAATCACTCATCACCTGATTGATTGGCTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGG ATATGATGACGTTTCTTTAAAATGTATGTATTTAACAAATACTTAATTGTATTAAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAA TTTACTCTCTACTTTTATCCATTTTATCCATTTTAACTCATGTAATCCTCATGTGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCA CAGAGAACATAAGTTGCATGCCATAGTCACACACTGTGAAAGTGAAAAGAGAATGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTA AAGGCAGGCTGTTATCTTTAGAATCAAGCTATCACAGGGAGATAGGCAATGCTGTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACA ATTTCCTGGTTTTAAAGCTAAGGCTGATTTTATTGGGAAGATCTCACATGTGTGTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAG TCCTTCCATTTGGACCTCCTAGCTGCCCCATCAGGTCATCTCCAGGGCTCAGAGGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTC TCTAGTCACCACCCTGCCTCTCCCTCTCACCCAGAGTCAGTACCAGTTTTATGGCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAA CTTGATTGATGGGATGTCATCCCTTATCCTGTCTGACATTTGCCTCTGGCCTGGTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAAT TTGGCTTCCTGAGGTGGGCTTTGTGGTTTGCGTCCCTAAAGTGAGCCCACTACTGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTG AGCACTACCTGGGTCTCATTCCAAGAAGGAAGAGGGTCAGGAGACCTGGGGAGTCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAG TGGGCAGTTCATGGTGTTAGGGCACTCACCCCCACAGACTGGCAAACCCTGCAGGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGA ATGCCGTTGGGTGGATTGTGAGTGAATGGGCCCTTTGAGCTGCCCTCTAGAGAGCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCT GTACTGGCTCGCTCAGATGCAGAAGCTCCATTGACCATGAGGCCTTGTGAACATCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGC ACTAGTTTAGGACCTGCAGCATGTAGGTAGCGTCCTAGTGTTTATAATACAAAGCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATC TCCTGAGGATTATCTGCCCCATTTTTAAAACGAGGTGGAATACCCAAGGTCATGTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCA TCCCTTCCTGGGGACCACACTGCTCTGCTCCACCAGACCACACTATGAAATAGGAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACA GGTGGTGTGGGACTTAAGTCACCATAATTTTGAAGACTTGCATGCAGAGGGCTCCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGT TCTACCCACTACTTAAGTACTTGTCATGTACTCTTAGAGGAGGCCAGTAATGATCAGAACCATTTTACTTTAAAATTAATAATATTGTAT TAGAGAATATATTAAATGGTTATATTGGGTTATGTTAGGATATATACTTGAATGGAAATACATGTACTATTAGCAATCATATTTCATTTA TCCCTGTAATTAGACAAGAAAGCATAATATAGCTCTACTCATGGGTACACATACCAGTGTATAAGATTTTTAGAAGTTTACTTTTTAAAA >98358_98358_3_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000526054_SF3A1_chr22_30742508_ENST00000215793_length(amino acids)=782AA_BP=51 MRRWLLVPCPPHRPWSSTQLTVCSCLSGVCLWCQNFGGRAPPHNKDALRPSNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF KEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQR NYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVV VETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPP PETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLD IESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSKPN EIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAP RPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTL -------------------------------------------------------------- >98358_98358_4_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000526054_SF3A1_chr22_30742508_ENST00000439242_length(transcript)=5498nt_BP=892nt CCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGGATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGC CGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCCCGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGA CAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGTGTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACA AAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGCTCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGG AGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGACGACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCA CGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATGGATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGA GCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTCAGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACG ACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCAGCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCC CTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTGGTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCA GCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTTGGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGC CTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACC GCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCAGAAAGAGC AGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAAGATCTTGA TTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAATGGG CCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCATGATTTTG TGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCGAATCCTCA TTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGAGAAGGCGG AGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCCC CACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGCCTCCAAGC CCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGAACACATGC GCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGCACCAGGTC TGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAAGATCGGTG AGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACA TCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCCCAGCAAGC CCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCCCCGACCAC CCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCGGCTGCCCC CAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCCTATTATGG CCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAATGCCCCCTG TGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTTCCTGCGCA GAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCTGGTCTTCA CCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCTACAGTATG AGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGAGAGAGGCG GGAGGAAGAAGTAGACAAGAGGAACCTGCTGTCAAGTCCCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCCCCAGACCCAGGAGCC CCCCTGAGGCTTTGCCTTGCCTGCATATTTGTTTCGCTCTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGGTTCATTCCCCTGACC CTTTCCCCACATTGGTAAGAGTAGCTGGGTTTTCTAAGCCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATTTGAGGACATTCATTT CTTCAGCAGCCCATTAGCAACTGAGAGCCCAGGGATGTCCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGGCTAATAGAATATGGC TGATATTGTCATTAATCATTTTGTACCTTGACATGGGTTGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGTTAAATAAGACTTGTC TCGGTCACCTGTGCCCTGTCCAGACTCGAGGCAGTGGTAACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGATTTTTGGGTTTTGTAA CTAAATTCTTGCTGCCCTCATACTTTTTATGTATTAGAATCATATTCGTATTGCCCTTTTAAAACATTGGGATCCTCCAAAGGCCTGCCC CATGTATTTAACAGTAATACAGGAAGCATGGCAGGCACCATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTCAGTGGGCGGTGGTTT CCTGCTGGCCTGGAATCACTCATCACCTGATTGATTGGCTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGGATATGATGACGTTTC TTTAAAATGTATGTATTTAACAAATACTTAATTGTATTAAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAATTTACTCTCTACTTT TATCCATTTTATCCATTTTAACTCATGTAATCCTCATGTGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCACAGAGAACATAAGTT GCATGCCATAGTCACACACTGTGAAAGTGAAAAGAGAATGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTAAAGGCAGGCTGTTAT CTTTAGAATCAAGCTATCACAGGGAGATAGGCAATGCTGTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACAATTTCCTGGTTTTAA AGCTAAGGCTGATTTTATTGGGAAGATCTCACATGTGTGTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAGTCCTTCCATTTGGAC CTCCTAGCTGCCCCATCAGGTCATCTCCAGGGCTCAGAGGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTCTCTAGTCACCACCCT GCCTCTCCCTCTCACCCAGAGTCAGTACCAGTTTTATGGCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAACTTGATTGATGGGAT GTCATCCCTTATCCTGTCTGACATTTGCCTCTGGCCTGGTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAATTTGGCTTCCTGAGGT GGGCTTTGTGGTTTGCGTCCCTAAAGTGAGCCCACTACTGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTGAGCACTACCTGGGTC TCATTCCAAGAAGGAAGAGGGTCAGGAGACCTGGGGAGTCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAGTGGGCAGTTCATGGT GTTAGGGCACTCACCCCCACAGACTGGCAAACCCTGCAGGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGAATGCCGTTGGGTGGA TTGTGAGTGAATGGGCCCTTTGAGCTGCCCTCTAGAGAGCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCTGTACTGGCTCGCTCA GATGCAGAAGCTCCATTGACCATGAGGCCTTGTGAACATCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGCACTAGTTTAGGACCT GCAGCATGTAGGTAGCGTCCTAGTGTTTATAATACAAAGCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATCTCCTGAGGATTATCT GCCCCATTTTTAAAACGAGGTGGAATACCCAAGGTCATGTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCATCCCTTCCTGGGGAC CACACTGCTCTGCTCCACCAGACCACACTATGAAATAGGAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACAGGTGGTGTGGGACTT AAGTCACCATAATTTTGAAGACTTGCATGCAGAGGGCTCCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGTTCTACCCACTACTTA AGTACTTGTCATGTACTCTTAGAGGAGGCCAGTAATGATCAGAACCATTTTACTTTAAAATTAATAATATTGTATTAGAGAATATATTAA ATGGTTATATTGGGTTATGTTAGGATATATACTTGAATGGAAATACATGTACTATTAGCAATCATATTTCATTTATCCCTGTAATTAGAC AAGAAAGCATAATATAGCTCTACTCATGGGTACACATACCAGTGTATAAGATTTTTAGAAGTTTACTTTTTAAAAATAAAAGCAAAATGT >98358_98358_4_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000526054_SF3A1_chr22_30742508_ENST00000439242_length(amino acids)=717AA_BP=51 MRRWLLVPCPPHRPWSSTQLTVCSCLSGVCLWCQNFGGRAPPHNKDALRPSNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF KEGKAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERE RKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQL DQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDP RWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQI EAIHKAKGLVPEDDTKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAP MPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for VPS28-SF3A1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for VPS28-SF3A1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for VPS28-SF3A1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |