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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:VPS28-SF3A1 (FusionGDB2 ID:98358)

Fusion Gene Summary for VPS28-SF3A1

check button Fusion gene summary
Fusion gene informationFusion gene name: VPS28-SF3A1
Fusion gene ID: 98358
HgeneTgene
Gene symbol

VPS28

SF3A1

Gene ID

51160

10291

Gene nameVPS28 subunit of ESCRT-Isplicing factor 3a subunit 1
Synonyms-PRP21|PRPF21|SAP114|SF3A120
Cytomap

8q24.3

22q12.2

Type of geneprotein-codingprotein-coding
Descriptionvacuolar protein sorting-associated protein 28 homologESCRT-I complex subunit VPS28VPS28, ESCRT-I subunitvacuolar protein sorting 28 homologvacuolar protein sorting 28-like proteinyeast class E protein Vps28p homologsplicing factor 3A subunit 1SAP 114pre-mRNA processing 21pre-mRNA splicing factor SF3a (120 kDa subunit)spliceosome-associated protein 114splicing factor 3 subunit 1splicing factor 3a, subunit 1, 120kDsplicing factor 3a, subunit 1, 120kDa
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000377348, ENST00000529182, 
ENST00000292510, ENST00000526054, 
ENST00000526734, 
ENST00000215793, 
ENST00000439242, 
Fusion gene scores* DoF score2 X 2 X 2=87 X 6 X 4=168
# samples 27
** MAII scorelog2(2/8*10)=1.32192809488736log2(7/168*10)=-1.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: VPS28 [Title/Abstract] AND SF3A1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointVPS28(145649000)-SF3A1(30742508), # samples:1
Anticipated loss of major functional domain due to fusion event.VPS28-SF3A1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
VPS28-SF3A1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneVPS28

GO:0031397

negative regulation of protein ubiquitination

18077552

TgeneSF3A1

GO:0000398

mRNA splicing, via spliceosome

10882114|29360106

TgeneSF3A1

GO:1903241

U2-type prespliceosome assembly

10882114|11533230


check buttonFusion gene breakpoints across VPS28 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across SF3A1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PRADTCGA-EJ-7783-01AVPS28chr8

145649000

-SF3A1chr22

30742508

-


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Fusion Gene ORF analysis for VPS28-SF3A1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000377348ENST00000215793VPS28chr8

145649000

-SF3A1chr22

30742508

-
Frame-shiftENST00000377348ENST00000439242VPS28chr8

145649000

-SF3A1chr22

30742508

-
Frame-shiftENST00000529182ENST00000215793VPS28chr8

145649000

-SF3A1chr22

30742508

-
Frame-shiftENST00000529182ENST00000439242VPS28chr8

145649000

-SF3A1chr22

30742508

-
In-frameENST00000292510ENST00000215793VPS28chr8

145649000

-SF3A1chr22

30742508

-
In-frameENST00000292510ENST00000439242VPS28chr8

145649000

-SF3A1chr22

30742508

-
In-frameENST00000526054ENST00000215793VPS28chr8

145649000

-SF3A1chr22

30742508

-
In-frameENST00000526054ENST00000439242VPS28chr8

145649000

-SF3A1chr22

30742508

-
intron-3CDSENST00000526734ENST00000215793VPS28chr8

145649000

-SF3A1chr22

30742508

-
intron-3CDSENST00000526734ENST00000439242VPS28chr8

145649000

-SF3A1chr22

30742508

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000526054VPS28chr8145649000-ENST00000215793SF3A1chr2230742508-56958927403088782
ENST00000526054VPS28chr8145649000-ENST00000439242SF3A1chr2230742508-54988927402893717
ENST00000292510VPS28chr8145649000-ENST00000215793SF3A1chr2230742508-57479447923140782
ENST00000292510VPS28chr8145649000-ENST00000439242SF3A1chr2230742508-55509447922945717

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000526054ENST00000215793VPS28chr8145649000-SF3A1chr2230742508-0.0019778840.9980221
ENST00000526054ENST00000439242VPS28chr8145649000-SF3A1chr2230742508-0.0011412790.9988587
ENST00000292510ENST00000215793VPS28chr8145649000-SF3A1chr2230742508-0.0020048660.99799514
ENST00000292510ENST00000439242VPS28chr8145649000-SF3A1chr2230742508-0.0011690240.998831

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Fusion Genomic Features for VPS28-SF3A1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for VPS28-SF3A1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr8:145649000/chr22:30742508)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneVPS28chr8:145649000chr22:30742508ENST00000292510-1010124_220284222.0DomainVPS28 C-terminal
HgeneVPS28chr8:145649000chr22:30742508ENST00000292510-101013_120284222.0DomainVPS28 N-terminal
HgeneVPS28chr8:145649000chr22:30742508ENST00000377348-99124_220324234.0DomainVPS28 C-terminal
HgeneVPS28chr8:145649000chr22:30742508ENST00000377348-9913_120324234.0DomainVPS28 N-terminal
HgeneVPS28chr8:145649000chr22:30742508ENST00000526054-99124_220284222.0DomainVPS28 C-terminal
HgeneVPS28chr8:145649000chr22:30742508ENST00000526054-9913_120284222.0DomainVPS28 N-terminal
HgeneVPS28chr8:145649000chr22:30742508ENST00000529182-88124_220324234.0DomainVPS28 C-terminal
HgeneVPS28chr8:145649000chr22:30742508ENST00000529182-8813_120324234.0DomainVPS28 N-terminal
TgeneSF3A1chr8:145649000chr22:30742508ENST00000215793116118_12261794.0Compositional biasNote=Poly-Gln
TgeneSF3A1chr8:145649000chr22:30742508ENST00000215793116260_26761794.0Compositional biasNote=Poly-Glu
TgeneSF3A1chr8:145649000chr22:30742508ENST00000215793116369_37261794.0Compositional biasNote=Poly-Pro
TgeneSF3A1chr8:145649000chr22:30742508ENST00000215793116557_56061794.0Compositional biasNote=Poly-Pro
TgeneSF3A1chr8:145649000chr22:30742508ENST00000215793116672_67561794.0Compositional biasNote=Poly-Pro
TgeneSF3A1chr8:145649000chr22:30742508ENST00000215793116707_79361794.0DomainUbiquitin-like
TgeneSF3A1chr8:145649000chr22:30742508ENST00000215793116680_70261794.0RegionRequired and sufficient for nuclear import
TgeneSF3A1chr8:145649000chr22:30742508ENST00000215793116166_20861794.0RepeatNote=SURP motif 2

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneSF3A1chr8:145649000chr22:30742508ENST0000021579311610_1661794.0Compositional biasNote=Poly-Pro
TgeneSF3A1chr8:145649000chr22:30742508ENST0000021579311652_9461794.0RepeatNote=SURP motif 1


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Fusion Gene Sequence for VPS28-SF3A1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>98358_98358_1_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000292510_SF3A1_chr22_30742508_ENST00000215793_length(transcript)=5747nt_BP=944nt
CGCTGACCGAGCGCACCCCGCCCCCGGCGCCATCTTCCCGACCGCGAGCCGTCCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGG
ATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGCCGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCC
CGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGACAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGT
GTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACAAAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGC
TCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGGAGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGAC
GACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCACGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATG
GATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGAGCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTC
AGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACGACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCA
GCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCCCTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTG
GTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCAGCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTT
GGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAAC
AACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAG
GAGCCGTCCGCCGCCATCCCCAAGGTCATGCAGCAGCAGCAGCAGACCACCCAGCAGCAGCTGCCCCAGAAGGTCCAAGCCCAAGTAATC
CAAGAGACCATCGTGCCCAAAGAGCCTCCTCCTGAGTTTGAGTTCATTGCTGATCCTCCCTCTATCTCAGCCTTCGACTTGGATGTGGTG
AAGCTGACGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTT
CTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCA
AAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGG
AAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTC
CAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTT
GGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGAC
CAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCT
CCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCA
GATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGC
TGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAG
CAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAG
GAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAG
GCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCA
CCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGT
ACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATG
CCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATT
GTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAA
GATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATC
AAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTC
TCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCC
AACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGAGAGAGGCGGGAGGAAGAAGTAGACAAGAGGA
ACCTGCTGTCAAGTCCCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCCCCAGACCCAGGAGCCCCCCTGAGGCTTTGCCTTGCCTG
CATATTTGTTTCGCTCTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGGTTCATTCCCCTGACCCTTTCCCCACATTGGTAAGAGTA
GCTGGGTTTTCTAAGCCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATTTGAGGACATTCATTTCTTCAGCAGCCCATTAGCAACTG
AGAGCCCAGGGATGTCCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGGCTAATAGAATATGGCTGATATTGTCATTAATCATTTTG
TACCTTGACATGGGTTGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGTTAAATAAGACTTGTCTCGGTCACCTGTGCCCTGTCCAG
ACTCGAGGCAGTGGTAACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGATTTTTGGGTTTTGTAACTAAATTCTTGCTGCCCTCATAC
TTTTTATGTATTAGAATCATATTCGTATTGCCCTTTTAAAACATTGGGATCCTCCAAAGGCCTGCCCCATGTATTTAACAGTAATACAGG
AAGCATGGCAGGCACCATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTCAGTGGGCGGTGGTTTCCTGCTGGCCTGGAATCACTCAT
CACCTGATTGATTGGCTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGGATATGATGACGTTTCTTTAAAATGTATGTATTTAACAA
ATACTTAATTGTATTAAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAATTTACTCTCTACTTTTATCCATTTTATCCATTTTAACT
CATGTAATCCTCATGTGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCACAGAGAACATAAGTTGCATGCCATAGTCACACACTGTG
AAAGTGAAAAGAGAATGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTAAAGGCAGGCTGTTATCTTTAGAATCAAGCTATCACAGG
GAGATAGGCAATGCTGTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACAATTTCCTGGTTTTAAAGCTAAGGCTGATTTTATTGGGA
AGATCTCACATGTGTGTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAGTCCTTCCATTTGGACCTCCTAGCTGCCCCATCAGGTCA
TCTCCAGGGCTCAGAGGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTCTCTAGTCACCACCCTGCCTCTCCCTCTCACCCAGAGTC
AGTACCAGTTTTATGGCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAACTTGATTGATGGGATGTCATCCCTTATCCTGTCTGACA
TTTGCCTCTGGCCTGGTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAATTTGGCTTCCTGAGGTGGGCTTTGTGGTTTGCGTCCCTA
AAGTGAGCCCACTACTGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTGAGCACTACCTGGGTCTCATTCCAAGAAGGAAGAGGGTC
AGGAGACCTGGGGAGTCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAGTGGGCAGTTCATGGTGTTAGGGCACTCACCCCCACAGA
CTGGCAAACCCTGCAGGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGAATGCCGTTGGGTGGATTGTGAGTGAATGGGCCCTTTGA
GCTGCCCTCTAGAGAGCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCTGTACTGGCTCGCTCAGATGCAGAAGCTCCATTGACCAT
GAGGCCTTGTGAACATCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGCACTAGTTTAGGACCTGCAGCATGTAGGTAGCGTCCTAG
TGTTTATAATACAAAGCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATCTCCTGAGGATTATCTGCCCCATTTTTAAAACGAGGTGG
AATACCCAAGGTCATGTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCATCCCTTCCTGGGGACCACACTGCTCTGCTCCACCAGAC
CACACTATGAAATAGGAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACAGGTGGTGTGGGACTTAAGTCACCATAATTTTGAAGACT
TGCATGCAGAGGGCTCCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGTTCTACCCACTACTTAAGTACTTGTCATGTACTCTTAGA
GGAGGCCAGTAATGATCAGAACCATTTTACTTTAAAATTAATAATATTGTATTAGAGAATATATTAAATGGTTATATTGGGTTATGTTAG
GATATATACTTGAATGGAAATACATGTACTATTAGCAATCATATTTCATTTATCCCTGTAATTAGACAAGAAAGCATAATATAGCTCTAC

>98358_98358_1_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000292510_SF3A1_chr22_30742508_ENST00000215793_length(amino acids)=782AA_BP=51
MRRWLLVPCPPHRPWSSTQLTVCSCLSGVCLWCQNFGGRAPPHNKDALRPSNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF
KEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQR
NYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVV
VETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPP
PETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLD
IESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSKPN
EIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAP
RPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTL

--------------------------------------------------------------
>98358_98358_2_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000292510_SF3A1_chr22_30742508_ENST00000439242_length(transcript)=5550nt_BP=944nt
CGCTGACCGAGCGCACCCCGCCCCCGGCGCCATCTTCCCGACCGCGAGCCGTCCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGG
ATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGCCGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCC
CGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGACAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGT
GTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACAAAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGC
TCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGGAGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGAC
GACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCACGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATG
GATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGAGCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTC
AGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACGACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCA
GCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCCCTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTG
GTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCAGCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTT
GGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGCCTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAAC
AACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACCGCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAG
TTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCAC
AGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAG
GCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAG
GAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAA
GGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAA
GTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTA
CAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCA
ACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTG
TCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGG
GATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGG
CGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGG
GATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCC
AAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCA
GCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCC
GCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCAC
GCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTT
GTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCC
AAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCC
AACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTG
AAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTAC
TACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGAGAGAGGCGGGAGGAAGAAGTAGACAAGAGGAACCTGCTGTCAAGTC
CCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCCCCAGACCCAGGAGCCCCCCTGAGGCTTTGCCTTGCCTGCATATTTGTTTCGCT
CTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGGTTCATTCCCCTGACCCTTTCCCCACATTGGTAAGAGTAGCTGGGTTTTCTAAG
CCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATTTGAGGACATTCATTTCTTCAGCAGCCCATTAGCAACTGAGAGCCCAGGGATGT
CCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGGCTAATAGAATATGGCTGATATTGTCATTAATCATTTTGTACCTTGACATGGGT
TGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGTTAAATAAGACTTGTCTCGGTCACCTGTGCCCTGTCCAGACTCGAGGCAGTGGT
AACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGATTTTTGGGTTTTGTAACTAAATTCTTGCTGCCCTCATACTTTTTATGTATTAGA
ATCATATTCGTATTGCCCTTTTAAAACATTGGGATCCTCCAAAGGCCTGCCCCATGTATTTAACAGTAATACAGGAAGCATGGCAGGCAC
CATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTCAGTGGGCGGTGGTTTCCTGCTGGCCTGGAATCACTCATCACCTGATTGATTGG
CTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGGATATGATGACGTTTCTTTAAAATGTATGTATTTAACAAATACTTAATTGTATT
AAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAATTTACTCTCTACTTTTATCCATTTTATCCATTTTAACTCATGTAATCCTCATG
TGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCACAGAGAACATAAGTTGCATGCCATAGTCACACACTGTGAAAGTGAAAAGAGAA
TGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTAAAGGCAGGCTGTTATCTTTAGAATCAAGCTATCACAGGGAGATAGGCAATGCT
GTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACAATTTCCTGGTTTTAAAGCTAAGGCTGATTTTATTGGGAAGATCTCACATGTGT
GTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAGTCCTTCCATTTGGACCTCCTAGCTGCCCCATCAGGTCATCTCCAGGGCTCAGA
GGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTCTCTAGTCACCACCCTGCCTCTCCCTCTCACCCAGAGTCAGTACCAGTTTTATG
GCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAACTTGATTGATGGGATGTCATCCCTTATCCTGTCTGACATTTGCCTCTGGCCTG
GTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAATTTGGCTTCCTGAGGTGGGCTTTGTGGTTTGCGTCCCTAAAGTGAGCCCACTAC
TGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTGAGCACTACCTGGGTCTCATTCCAAGAAGGAAGAGGGTCAGGAGACCTGGGGAG
TCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAGTGGGCAGTTCATGGTGTTAGGGCACTCACCCCCACAGACTGGCAAACCCTGCA
GGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGAATGCCGTTGGGTGGATTGTGAGTGAATGGGCCCTTTGAGCTGCCCTCTAGAGA
GCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCTGTACTGGCTCGCTCAGATGCAGAAGCTCCATTGACCATGAGGCCTTGTGAACA
TCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGCACTAGTTTAGGACCTGCAGCATGTAGGTAGCGTCCTAGTGTTTATAATACAAA
GCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATCTCCTGAGGATTATCTGCCCCATTTTTAAAACGAGGTGGAATACCCAAGGTCAT
GTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCATCCCTTCCTGGGGACCACACTGCTCTGCTCCACCAGACCACACTATGAAATAG
GAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACAGGTGGTGTGGGACTTAAGTCACCATAATTTTGAAGACTTGCATGCAGAGGGCT
CCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGTTCTACCCACTACTTAAGTACTTGTCATGTACTCTTAGAGGAGGCCAGTAATGA
TCAGAACCATTTTACTTTAAAATTAATAATATTGTATTAGAGAATATATTAAATGGTTATATTGGGTTATGTTAGGATATATACTTGAAT
GGAAATACATGTACTATTAGCAATCATATTTCATTTATCCCTGTAATTAGACAAGAAAGCATAATATAGCTCTACTCATGGGTACACATA

>98358_98358_2_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000292510_SF3A1_chr22_30742508_ENST00000439242_length(amino acids)=717AA_BP=51
MRRWLLVPCPPHRPWSSTQLTVCSCLSGVCLWCQNFGGRAPPHNKDALRPSNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF
KEGKAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERE
RKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQL
DQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDP
RWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQI
EAIHKAKGLVPEDDTKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAP
MPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVS

--------------------------------------------------------------
>98358_98358_3_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000526054_SF3A1_chr22_30742508_ENST00000215793_length(transcript)=5695nt_BP=892nt
CCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGGATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGC
CGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCCCGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGA
CAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGTGTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACA
AAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGCTCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGG
AGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGACGACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCA
CGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATGGATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGA
GCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTCAGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACG
ACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCAGCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCC
CTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTGGTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCA
GCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTTGGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGC
CTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACC
GCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGGAGCCGTCCGCCGCCATCCCCAAGGTCATGCAGCAGCAGCAGCAGACCACCC
AGCAGCAGCTGCCCCAGAAGGTCCAAGCCCAAGTAATCCAAGAGACCATCGTGCCCAAAGAGCCTCCTCCTGAGTTTGAGTTCATTGCTG
ATCCTCCCTCTATCTCAGCCTTCGACTTGGATGTGGTGAAGCTGACGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGC
TGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGT
ACACCAAGATCTTGATTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTT
ACCGAGTGGAATGGGCCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCG
ACTGGCATGATTTTGTGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGG
GGGCCCGAATCCTCATTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACA
AACAGGAGAAGGCGGAGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAG
GGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATC
CCAAAGCCTCCAAGCCCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAA
TGCAGGAACACATGCGCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGG
TGTACGCACCAGGTCTGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTG
GTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGG
CTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGA
TTGGCCCCAGCAAGCCCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTT
CAGTGCCCCGACCACCCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTG
TGGTCCGGCTGCCCCCAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGG
CCCCTCCTATTATGGCCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAG
CCCCAATGCCCCCTGTGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGG
AGGAGTTCCTGCGCAGAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGC
AGGTGCTGGTCTTCACCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAAC
AGAAGCTACAGTATGAGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCC
TCAAGGAGAGAGGCGGGAGGAAGAAGTAGACAAGAGGAACCTGCTGTCAAGTCCCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCC
CCAGACCCAGGAGCCCCCCTGAGGCTTTGCCTTGCCTGCATATTTGTTTCGCTCTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGG
TTCATTCCCCTGACCCTTTCCCCACATTGGTAAGAGTAGCTGGGTTTTCTAAGCCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATT
TGAGGACATTCATTTCTTCAGCAGCCCATTAGCAACTGAGAGCCCAGGGATGTCCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGG
CTAATAGAATATGGCTGATATTGTCATTAATCATTTTGTACCTTGACATGGGTTGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGT
TAAATAAGACTTGTCTCGGTCACCTGTGCCCTGTCCAGACTCGAGGCAGTGGTAACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGAT
TTTTGGGTTTTGTAACTAAATTCTTGCTGCCCTCATACTTTTTATGTATTAGAATCATATTCGTATTGCCCTTTTAAAACATTGGGATCC
TCCAAAGGCCTGCCCCATGTATTTAACAGTAATACAGGAAGCATGGCAGGCACCATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTC
AGTGGGCGGTGGTTTCCTGCTGGCCTGGAATCACTCATCACCTGATTGATTGGCTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGG
ATATGATGACGTTTCTTTAAAATGTATGTATTTAACAAATACTTAATTGTATTAAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAA
TTTACTCTCTACTTTTATCCATTTTATCCATTTTAACTCATGTAATCCTCATGTGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCA
CAGAGAACATAAGTTGCATGCCATAGTCACACACTGTGAAAGTGAAAAGAGAATGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTA
AAGGCAGGCTGTTATCTTTAGAATCAAGCTATCACAGGGAGATAGGCAATGCTGTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACA
ATTTCCTGGTTTTAAAGCTAAGGCTGATTTTATTGGGAAGATCTCACATGTGTGTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAG
TCCTTCCATTTGGACCTCCTAGCTGCCCCATCAGGTCATCTCCAGGGCTCAGAGGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTC
TCTAGTCACCACCCTGCCTCTCCCTCTCACCCAGAGTCAGTACCAGTTTTATGGCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAA
CTTGATTGATGGGATGTCATCCCTTATCCTGTCTGACATTTGCCTCTGGCCTGGTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAAT
TTGGCTTCCTGAGGTGGGCTTTGTGGTTTGCGTCCCTAAAGTGAGCCCACTACTGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTG
AGCACTACCTGGGTCTCATTCCAAGAAGGAAGAGGGTCAGGAGACCTGGGGAGTCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAG
TGGGCAGTTCATGGTGTTAGGGCACTCACCCCCACAGACTGGCAAACCCTGCAGGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGA
ATGCCGTTGGGTGGATTGTGAGTGAATGGGCCCTTTGAGCTGCCCTCTAGAGAGCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCT
GTACTGGCTCGCTCAGATGCAGAAGCTCCATTGACCATGAGGCCTTGTGAACATCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGC
ACTAGTTTAGGACCTGCAGCATGTAGGTAGCGTCCTAGTGTTTATAATACAAAGCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATC
TCCTGAGGATTATCTGCCCCATTTTTAAAACGAGGTGGAATACCCAAGGTCATGTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCA
TCCCTTCCTGGGGACCACACTGCTCTGCTCCACCAGACCACACTATGAAATAGGAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACA
GGTGGTGTGGGACTTAAGTCACCATAATTTTGAAGACTTGCATGCAGAGGGCTCCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGT
TCTACCCACTACTTAAGTACTTGTCATGTACTCTTAGAGGAGGCCAGTAATGATCAGAACCATTTTACTTTAAAATTAATAATATTGTAT
TAGAGAATATATTAAATGGTTATATTGGGTTATGTTAGGATATATACTTGAATGGAAATACATGTACTATTAGCAATCATATTTCATTTA
TCCCTGTAATTAGACAAGAAAGCATAATATAGCTCTACTCATGGGTACACATACCAGTGTATAAGATTTTTAGAAGTTTACTTTTTAAAA

>98358_98358_3_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000526054_SF3A1_chr22_30742508_ENST00000215793_length(amino acids)=782AA_BP=51
MRRWLLVPCPPHRPWSSTQLTVCSCLSGVCLWCQNFGGRAPPHNKDALRPSNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF
KEGKAQEPSAAIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQR
NYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVV
VETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSDDEEEGQKVPPP
PETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLD
IESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSKPN
EIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAP
RPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTL

--------------------------------------------------------------
>98358_98358_4_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000526054_SF3A1_chr22_30742508_ENST00000439242_length(transcript)=5498nt_BP=892nt
CCAGGTCTCAGTGCTGTGCCCCCCCCAGAGCCTAGAGGATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGC
CGGAGCTGTATGAGGAAGTGAAGTTGTACAAGAACGCCCGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAAGA
CAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGTGTCTCCCCCAGCGAGTACACTGCAGCCTGCTCCCGGCTCCTGGTCCAATACA
AAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGCTCTATTGACGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGG
AGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGACGACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCA
CGGTCATGGACAAGCTGCGCCTGGAGATCCGCGCCATGGATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCATGCACCGCATGA
GCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTCAGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGATGAGCTGGACG
ACTCACAGGTGCGTCAGATGCTGTTCGACCTGGAGTCAGCCTACAACGCCTTCAACCGCTTCCTGCATGCCTGAGCCCGGGGCACTAGCC
CTTGCACAGAAGGGCAGAGTCTGAGGCGATGGCTCCTGGTCCCCTGTCCGCCACACAGGCCGTGGTCATCCACACAACTCACTGTCTGCA
GCTGCCTGTCTGGTGTCTGTCTTTGGTGTCAGAACTTTGGGGGCCGGGCCCCTCCCCACAATAAAGATGCTCTCCGACCTTCAAACGGGC
CTGAATTTGAAGCTAGGATCCGACAGAACGAGATCAACAACCCCAAGTTCAACTTTCTGAACCCCAATGACCCTTACCATGCCTACTACC
GCCACAAGGTCAGCGAGTTCAAGGAAGGGAAGGCTCAGTTTGTGGCCAGGAATGGGCGCCAGTTTCTGACCCAGCTGATGCAGAAAGAGC
AGCGCAACTACCAGTTTGACTTTCTCCGCCCACAGCACAGCCTCTTCAACTACTTCACGAAGCTAGTGGAACAGTACACCAAGATCTTGA
TTCCACCCAAAGGTTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAACCCCCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAATGGG
CCAAATTCCAGGAACGTGAGAGGAAGAAGGAAGAAGAGGAGAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATCGACTGGCATGATTTTG
TGGTGGTGGAAACAGTGGACTTCCAACCCAATGAGCAAGGGAACTTCCCTCCCCCCACCACGCCAGAGGAGCTGGGGGCCCGAATCCTCA
TTCAGGAGCGCTATGAAAAGTTTGGGGAGAGTGAGGAAGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGACAAACAGGAGAAGGCGG
AGGAGCCTCCTTCCCAGCTGGACCAGGACACCCAAGTACAAGATATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCCC
CACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGATTATGATCCCAAAGCCTCCAAGC
CCTTGCCTCCAGCCCCTGCTCCAGATGAGTATCTTGTGTCCCCCATTACTGGGGAGAAGATCCCCGCCAGCAAAATGCAGGAACACATGC
GCATTGGACTTCTTGACCCTCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGTGAGAAGCAGAGCGATGATGAGGTGTACGCACCAGGTC
TGGATATTGAGAGCAGCTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTCGGTGTAGAGGAAACAGCCATTGGTAAGAAGATCGGTG
AGGAGGAGATCCAGAAGCCAGAGGAAAAGGTGACCTGGGATGGCCACTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACA
TCACCCTCCAGGAGCAGATTGAGGCCATTCACAAGGCCAAAGGCCTGGTGCCAGAGGATGACACTAAAGAGAAGATTGGCCCCAGCAAGC
CCAATGAAATCCCTCAACAGCCACCGCCACCATCTTCAGCCACCAACATCCCCAGCTCGGCTCCACCCATCACTTCAGTGCCCCGACCAC
CCACAATGCCACCTCCAGTTCGTACTACAGTTGTCTCCGCAGTACCCGTCATGCCCCGGCCCCCAATGGCATCTGTGGTCCGGCTGCCCC
CAGGCTCAGTGATCGCCCCCATGCCGCCCATCATCCACGCGCCCAGAATCAACGTGGTGCCCATGCCTCCCTCGGCCCCTCCTATTATGG
CCCCCCGCCCACCCCCCATGATTGTGCCAACAGCCTTTGTGCCTGCTCCACCTGTGGCACCTGTCCCAGCTCCAGCCCCAATGCCCCCTG
TGCATCCCCCACCTCCCATGGAAGATGAGCCCACCTCCAAAAAACTGAAGACAGAGGACAGCCTCATGCCAGAGGAGGAGTTCCTGCGCA
GAAACAAGGGTCCAGTGTCCATCAAAGTCCAGGTGCCCAACATGCAGGATAAGACGGAATGGAAACTGAATGGGCAGGTGCTGGTCTTCA
CCCTCCCACTCACGGACCAGGTCTCTGTCATTAAGGTGAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAGCTACAGTATG
AGGGTATCTTCATCAAAGATTCCAACTCACTGGCTTACTACAACATGGCCAATGGCGCAGTCATCCACCTGGCCCTCAAGGAGAGAGGCG
GGAGGAAGAAGTAGACAAGAGGAACCTGCTGTCAAGTCCCTGCCATTTTGCCTCTCCTGTCTCCCACCCCCTGCCCCAGACCCAGGAGCC
CCCCTGAGGCTTTGCCTTGCCTGCATATTTGTTTCGCTCTTACTCAGTTTGGGAATTCAAATTGTCCTGCAGAGGTTCATTCCCCTGACC
CTTTCCCCACATTGGTAAGAGTAGCTGGGTTTTCTAAGCCACTCTCTGGAATCTCTTTGTGTTAGGGTCTCGATTTGAGGACATTCATTT
CTTCAGCAGCCCATTAGCAACTGAGAGCCCAGGGATGTCCTACAGGATAGTTTCATAGTGACAGGTGGCACTTGGCTAATAGAATATGGC
TGATATTGTCATTAATCATTTTGTACCTTGACATGGGTTGTCTAATAAAACTCGGACCCTTCTTGTGAAATCAGTTAAATAAGACTTGTC
TCGGTCACCTGTGCCCTGTCCAGACTCGAGGCAGTGGTAACACTGCACAGTGCTATGTGGCTTCTCTTTGAGGATTTTTGGGTTTTGTAA
CTAAATTCTTGCTGCCCTCATACTTTTTATGTATTAGAATCATATTCGTATTGCCCTTTTAAAACATTGGGATCCTCCAAAGGCCTGCCC
CATGTATTTAACAGTAATACAGGAAGCATGGCAGGCACCATGCAAACCAAGGATGGATGGTGCAGTCCCTGTGTCAGTGGGCGGTGGTTT
CCTGCTGGCCTGGAATCACTCATCACCTGATTGATTGGCTCTGTGGTCCTGGGCAGGTGCCTCATAGGTGTGTGGATATGATGACGTTTC
TTTAAAATGTATGTATTTAACAAATACTTAATTGTATTAAGGTCATGTACCAAGGATTTGATAAAGTTTAAATAATTTACTCTCTACTTT
TATCCATTTTATCCATTTTAACTCATGTAATCCTCATGTGAGTATTCCTGTTTAACACTTGAGTAAACTGAGGCACAGAGAACATAAGTT
GCATGCCATAGTCACACACTGTGAAAGTGAAAAGAGAATGTGTGCAAAACACGTCACAGTCCTGGTTTCTGAGTAAAGGCAGGCTGTTAT
CTTTAGAATCAAGCTATCACAGGGAGATAGGCAATGCTGTGGGTGTTGGAGGAAGGTGAGAGCCTGTTGCTAACAATTTCCTGGTTTTAA
AGCTAAGGCTGATTTTATTGGGAAGATCTCACATGTGTGTGGCCCCTGAGAGTTCCCAGTGCCTTTTATTTGCAGTCCTTCCATTTGGAC
CTCCTAGCTGCCCCATCAGGTCATCTCCAGGGCTCAGAGGGGTGAGACCATTTCCCAAGGTCACAGAACCAGCTCTCTAGTCACCACCCT
GCCTCTCCCTCTCACCCAGAGTCAGTACCAGTTTTATGGCTTTATTACAAACTGCTGGGTCCCTCCCATTTTCAACTTGATTGATGGGAT
GTCATCCCTTATCCTGTCTGACATTTGCCTCTGGCCTGGTTGCTAGAAGTTTGCCCCAGGGGCAAGAGTTGAAATTTGGCTTCCTGAGGT
GGGCTTTGTGGTTTGCGTCCCTAAAGTGAGCCCACTACTGGTTGCTTGTCCATGGCCAACACCAGAAATCCCCTGAGCACTACCTGGGTC
TCATTCCAAGAAGGAAGAGGGTCAGGAGACCTGGGGAGTCTCATATTCCAAGTTCTTCTTTCTTTCTGGGAGCAGTGGGCAGTTCATGGT
GTTAGGGCACTCACCCCCACAGACTGGCAAACCCTGCAGGACTTCCGTGGCTGAGGCTGTGACCGGAGGCCAGGAATGCCGTTGGGTGGA
TTGTGAGTGAATGGGCCCTTTGAGCTGCCCTCTAGAGAGCAAATCCAGTTTCCTGGAGCTCCTGAATGAATATCTGTACTGGCTCGCTCA
GATGCAGAAGCTCCATTGACCATGAGGCCTTGTGAACATCAGTGGCCACAGGCCCAGTGTGCTGCTTGGCACTGCACTAGTTTAGGACCT
GCAGCATGTAGGTAGCGTCCTAGTGTTTATAATACAAAGCTGCTCTGCACAGCTTTTCTGATTCTTCTTGCAATCTCCTGAGGATTATCT
GCCCCATTTTTAAAACGAGGTGGAATACCCAAGGTCATGTAGCCAGTGAGTGCTCTGGAAAGCCAAAGCAGCTCATCCCTTCCTGGGGAC
CACACTGCTCTGCTCCACCAGACCACACTATGAAATAGGAATAAGTGCTCCTGTTGCAGGACTGCTGGGAAAACAGGTGGTGTGGGACTT
AAGTCACCATAATTTTGAAGACTTGCATGCAGAGGGCTCCAGGAATTGTAGACATTAAGGAATTTCACTTTCAGTTCTACCCACTACTTA
AGTACTTGTCATGTACTCTTAGAGGAGGCCAGTAATGATCAGAACCATTTTACTTTAAAATTAATAATATTGTATTAGAGAATATATTAA
ATGGTTATATTGGGTTATGTTAGGATATATACTTGAATGGAAATACATGTACTATTAGCAATCATATTTCATTTATCCCTGTAATTAGAC
AAGAAAGCATAATATAGCTCTACTCATGGGTACACATACCAGTGTATAAGATTTTTAGAAGTTTACTTTTTAAAAATAAAAGCAAAATGT

>98358_98358_4_VPS28-SF3A1_VPS28_chr8_145649000_ENST00000526054_SF3A1_chr22_30742508_ENST00000439242_length(amino acids)=717AA_BP=51
MRRWLLVPCPPHRPWSSTQLTVCSCLSGVCLWCQNFGGRAPPHNKDALRPSNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEF
KEGKAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERE
RKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQL
DQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDP
RWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQI
EAIHKAKGLVPEDDTKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAP
MPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVS

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Fusion Gene PPI Analysis for VPS28-SF3A1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for VPS28-SF3A1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for VPS28-SF3A1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource