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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:WNT2-ASZ1 (FusionGDB2 ID:99360) |
Fusion Gene Summary for WNT2-ASZ1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: WNT2-ASZ1 | Fusion gene ID: 99360 | Hgene | Tgene | Gene symbol | WNT2 | ASZ1 | Gene ID | 7472 | 136991 |
| Gene name | Wnt family member 2 | ankyrin repeat, SAM and basic leucine zipper domain containing 1 | |
| Synonyms | INT1L1|IRP | ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 | |
| Cytomap | 7q31.2 | 7q31.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein Wnt-2Int-1-related proteinepididymis secretory sperm binding proteinint-1-like protein 1secreted growth factorwingless-type MMTV integration site family member 2 | ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1ankyrin-like 1ankyrin-like protein 1germ cell-specific ankyrin, SAM and basic leucine zipper domain-containing protein | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | Q8WWH4 | |
| Ensembl transtripts involved in fusion gene | ENST00000265441, | ENST00000284629, | |
| Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 5 X 4 X 4=80 |
| # samples | 1 | 5 | |
| ** MAII score | log2(1/4*10)=1.32192809488736 | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: WNT2 [Title/Abstract] AND ASZ1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | ASZ1(117060217)-WNT2(116960847), # samples:1 ASZ1(117062291)-WNT2(116960847), # samples:1 WNT2(116962961)-ASZ1(117066989), # samples:3 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | WNT2 | GO:0007267 | cell-cell signaling | 10557084 |
| Hgene | WNT2 | GO:0008284 | positive regulation of cell proliferation | 10347172 |
| Hgene | WNT2 | GO:0033278 | cell proliferation in midbrain | 20018874 |
| Hgene | WNT2 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 20018874 |
| Hgene | WNT2 | GO:0051091 | positive regulation of DNA-binding transcription factor activity | 10557084 |
| Hgene | WNT2 | GO:0060070 | canonical Wnt signaling pathway | 10347172|10557084|20018874 |
| Hgene | WNT2 | GO:1904948 | midbrain dopaminergic neuron differentiation | 20018874 |
| Hgene | WNT2 | GO:1904954 | canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation | 20018874 |
| Fusion gene breakpoints across WNT2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across ASZ1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | LGG | TCGA-HT-A61C-01A | WNT2 | chr7 | 116962961 | - | ASZ1 | chr7 | 117066989 | - |
| ChimerDB4 | LGG | TCGA-HT-A61C | WNT2 | chr7 | 116962961 | - | ASZ1 | chr7 | 117066989 | - |
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Fusion Gene ORF analysis for WNT2-ASZ1 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000265441 | ENST00000284629 | WNT2 | chr7 | 116962961 | - | ASZ1 | chr7 | 117066989 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000265441 | WNT2 | chr7 | 116962961 | - | ENST00000284629 | ASZ1 | chr7 | 117066989 | - | 2080 | 383 | 323 | 1705 | 460 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000265441 | ENST00000284629 | WNT2 | chr7 | 116962961 | - | ASZ1 | chr7 | 117066989 | - | 0.00025622 | 0.99974376 |
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Fusion Genomic Features for WNT2-ASZ1 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for WNT2-ASZ1 |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr7:117060217/chr7:116960847) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | ASZ1 |
| FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Plays a central role during spermatogenesis by repressing transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in the regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | ASZ1 | chr7:116962961 | chr7:117066989 | ENST00000284629 | 0 | 13 | 272_334 | 35 | 476.0 | Domain | SAM | |
| Tgene | ASZ1 | chr7:116962961 | chr7:117066989 | ENST00000284629 | 0 | 13 | 110_144 | 35 | 476.0 | Repeat | ANK 3 | |
| Tgene | ASZ1 | chr7:116962961 | chr7:117066989 | ENST00000284629 | 0 | 13 | 148_177 | 35 | 476.0 | Repeat | ANK 4 | |
| Tgene | ASZ1 | chr7:116962961 | chr7:117066989 | ENST00000284629 | 0 | 13 | 181_210 | 35 | 476.0 | Repeat | ANK 5 | |
| Tgene | ASZ1 | chr7:116962961 | chr7:117066989 | ENST00000284629 | 0 | 13 | 214_243 | 35 | 476.0 | Repeat | ANK 6 | |
| Tgene | ASZ1 | chr7:116962961 | chr7:117066989 | ENST00000284629 | 0 | 13 | 45_74 | 35 | 476.0 | Repeat | ANK 1 | |
| Tgene | ASZ1 | chr7:116962961 | chr7:117066989 | ENST00000284629 | 0 | 13 | 78_107 | 35 | 476.0 | Repeat | ANK 2 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for WNT2-ASZ1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >99360_99360_1_WNT2-ASZ1_WNT2_chr7_116962961_ENST00000265441_ASZ1_chr7_117066989_ENST00000284629_length(transcript)=2080nt_BP=383nt AGCAGAGCGGACGGGGCGCGCGGGAGGCGCGCAGAGCTTTCGGGCTGCAGGCGCTCGCTGCGCCTGGGGAATTGGGCTGTGGGCGAGGCG GTCCGGGCTGGCCTTTATCGCTCGCTGGGCCCATCGTTTGAAACTTTATCAGCGAGTCTCGCCACTCGTCGCAGACGCGAGCGGGGGGCG GGGGCGCGGCGAGGCGCCGGCGGCCGTGACGAGGCGCTCCCGGAGCTGAGCGCTTCTGCTCTGGGCACGCATGGCGCCCGCACACGGAGT CTGACCTGATGCAGACGCAAGGGGGTTAATATGAACGCCCCTCTCGGTGGAATCTGGCTCTGGCTCCCTCTGCTCTTGACCTGGCTCACC CCCGAGGTCAACTCTTCATGGTGAAATTGAAAAGGCTATTACCCATTGAAGAAAAGAAAGAAAAATTTAAGAAAGCAATGACCATCGGAG ATGTTTCATTGGTCCAGGAGCTCCTAGATTCTGGCATTAGTGTAGATTCCAACTTTCAGTATGGATGGACTCCCCTTATGTATGCTGCTA GTGTTGCCAATGCAGAGCTGGTTCGGGTCCTTTTGGACAGAGGTGCTAATGCAAGCTTTGAGAAGGATAAGCAAAGTATTTTGATAACTG CATGTTCTGCTCATGGCTCAGAGGAACAGATCTTGAAGTGTGTAGAACTACTACTTTCAAGAAATGCTGATCCAAATGTTGCTTGTAGGA GACTTATGACCCCAATCATGTATGCTGCTCGAGATGGTCACACCCAGGTTGTTGCTCTCCTTGTTGCTCATGGAGCAGAAGTTAATACCC AGGATGAGAATGGTTACACTGCTTTAACGTGGGCAGCACGTCAGGGTCATAAAAATATAGTTTTGAAGTTGCTTGAACTTGGAGCTAATA AAATGCTACAAACCAAAGATGGAAAGATGCCAAGTGAGATTGCAAAAAGAAACAAACATCATGAGATCTTCAACTTACTTTCTTTTACTT TAAATCCATTGGAAGGAAAACTTCAACAGCTAACTAAAGAAGACACTATTTGTAAAATATTGACAACAGATTCTGATAGAGAAAAAGATC ACATTTTTAGTTCATATACAGCATTTGGAGATCTGGAAGTATTTTTACATGGTCTTGGACTTGAACATATGACAGATTTACTAAAGGAAA GGGATATAACGTTAAGACATCTTTTGACCATGAGGGAAGATGAATTTACAAAGAATGGAATTACCAGTAAAGACCAGCAGAAAATTCTGG CTGCTCTTAAAGAACTACAGGTAGAAGAGATACAATTTGGAGAGCTATCTGAAGAGACAAAGTTGGAAATCAGTGGTGATGAGTTCCTCA ACTTTCTTCTCAAATTAAATAAACAGTGTGGCCATTTAATAACAGCTGTACAGAATGTTATTACTGAGTTACCTGTAAATTCTCAAAAGA TAACACTGGAATGGGCTTCTCCCCAGAATTTTACTTCAGTTTGTGAAGAATTGGTTAATAATGTTGAAGATTTGAGTGAAAAGGTCTGCA AACTAAAAGACCTAATTCAAAAGTTGCAAAATGAACGGGAAAATGATCCAACTCATATACAATTAAGGGAAGAAGTATCTACATGGAATA GTAGAATTTTGAAGAGGACAGCTATTACCATATGCGGATTCGGTTTTCTTCTTTTCATTTGCAAGCTAACTTTCCAGAGGAAATAATCCA AATATTTGTTTTAAGTTATATATACACATCTTATTGAACCATCCAAAAATCATTGCTTTTAACTGTTTGCAGCACAATATAACTTTACAT TCTTTGCCAATATTCCATAGGAAAAATTTTGACAATGTGGAGTTTTTTTTTAAAAAGTGGTTTGTTACTTTGACTTATAAATACAATTTG TTATGTTTATGTTAATTGTGATTAGGTAGTAAAGTATAAGTAATTTTTTGGTTTGATCGTATCTAAATCACATTCAAAATTAAAGTTATA TCTAATATCTTTGACATTTTTTAAAGTGTGTTCATTTGTCAGTGAATCGTACAGGATTTGTAAAGTGTTCATAAATTGAGCTTTCTTTTG >99360_99360_1_WNT2-ASZ1_WNT2_chr7_116962961_ENST00000265441_ASZ1_chr7_117066989_ENST00000284629_length(amino acids)=460AA_BP=20 MALAPSALDLAHPRGQLFMVKLKRLLPIEEKKEKFKKAMTIGDVSLVQELLDSGISVDSNFQYGWTPLMYAASVANAELVRVLLDRGANA SFEKDKQSILITACSAHGSEEQILKCVELLLSRNADPNVACRRLMTPIMYAARDGHTQVVALLVAHGAEVNTQDENGYTALTWAARQGHK NIVLKLLELGANKMLQTKDGKMPSEIAKRNKHHEIFNLLSFTLNPLEGKLQQLTKEDTICKILTTDSDREKDHIFSSYTAFGDLEVFLHG LGLEHMTDLLKERDITLRHLLTMREDEFTKNGITSKDQQKILAALKELQVEEIQFGELSEETKLEISGDEFLNFLLKLNKQCGHLITAVQ NVITELPVNSQKITLEWASPQNFTSVCEELVNNVEDLSEKVCKLKDLIQKLQNERENDPTHIQLREEVSTWNSRILKRTAITICGFGFLL -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for WNT2-ASZ1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for WNT2-ASZ1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for WNT2-ASZ1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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