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Center for Computational Systems Medicine
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Fusion Gene and Fusion Protein Summary

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Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)

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Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)

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Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)

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Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)

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Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)

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Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)

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Potential target of CAR-T therapy development

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Information on the samples that have these potential fusion neoantigens

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Fusion Protein Targeting Drugs - (Manual Curation)

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Fusion Protein Related diseases - (Manual Curation)

Fusion Protein:BRWD1-EZR

Fusion Gene and Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: BRWD1-EZR
FusionPDB ID: 10344
FusionGDB2.0 ID: 10344
HgeneTgene
Gene symbol

BRWD1

EZR

Gene ID

54014

7430

Gene namebromodomain and WD repeat domain containing 1ezrin
SynonymsC21orf107|DCAF19|N143|WDR9|WRD9CVIL|CVL|HEL-S-105|VIL2
Cytomap

21q22.2

6q25.3

Type of geneprotein-codingprotein-coding
Descriptionbromodomain and WD repeat-containing protein 1WD repeat protein WDR9-form2WD repeat-containing protein 9transcriptional unit N143ezrincytovillin 2epididymis secretory protein Li 105p81villin 2 (ezrin)
Modification date2020031320200322
UniProtAcc

Q9NSI6

Main function of 5'-partner protein: FUNCTION: May be a transcriptional activator. May be involved in chromatin remodeling (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. {ECO:0000250, ECO:0000269|PubMed:21834987}.

P15311

Main function of 5'-partner protein: FUNCTION: Probably involved in connections of major cytoskeletal structures to the plasma membrane. In epithelial cells, required for the formation of microvilli and membrane ruffles on the apical pole. Along with PLEKHG6, required for normal macropinocytosis. {ECO:0000269|PubMed:17881735, ECO:0000269|PubMed:18270268, ECO:0000269|PubMed:19111582}.
Ensembl transtripts involved in fusion geneENST idsENST00000333229, ENST00000342449, 
ENST00000380800, ENST00000341322, 
ENST00000470108, 
ENST00000476189, 
ENST00000337147, ENST00000367075, 
ENST00000392177, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score28 X 28 X 10=784025 X 24 X 6=3600
# samples 3227
** MAII scorelog2(32/7840*10)=-4.61470984411521
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(27/3600*10)=-3.73696559416621
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Fusion gene context

PubMed: BRWD1 [Title/Abstract] AND EZR [Title/Abstract] AND fusion [Title/Abstract]

Fusion neoantigen context

PubMed: BRWD1 [Title/Abstract] AND EZR [Title/Abstract] AND neoantigen [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)BRWD1(40622722)-EZR(159192439), # samples:1
Anticipated loss of major functional domain due to fusion event.BRWD1-EZR seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
BRWD1-EZR seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
BRWD1-EZR seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
BRWD1-EZR seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneEZR

GO:0048015

phosphatidylinositol-mediated signaling

25591774

TgeneEZR

GO:0051017

actin filament bundle assembly

10793131



check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr21:40622722/chr6:159192439)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonRetention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

check buttonFusion gene breakpoints across BRWD1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across EZR (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Amino Acid Sequences


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000333229BRWD1chr2140622722-ENST00000337147EZRchr6159192439-4816267723536421135
ENST00000333229BRWD1chr2140622722-ENST00000367075EZRchr6159192439-4809267723536421135
ENST00000333229BRWD1chr2140622722-ENST00000392177EZRchr6159192439-3661267723536421135
ENST00000342449BRWD1chr2140622722-ENST00000337147EZRchr6159192439-456724287933931104
ENST00000342449BRWD1chr2140622722-ENST00000367075EZRchr6159192439-456024287933931104
ENST00000342449BRWD1chr2140622722-ENST00000392177EZRchr6159192439-341224287933931104
ENST00000380800BRWD1chr2140622722-ENST00000337147EZRchr6159192439-45872448634131135
ENST00000380800BRWD1chr2140622722-ENST00000367075EZRchr6159192439-45802448634131135
ENST00000380800BRWD1chr2140622722-ENST00000392177EZRchr6159192439-34322448634131135

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000333229ENST00000337147BRWD1chr2140622722-EZRchr6159192439-0.0019525680.9980475
ENST00000333229ENST00000367075BRWD1chr2140622722-EZRchr6159192439-0.0019123170.9980877
ENST00000333229ENST00000392177BRWD1chr2140622722-EZRchr6159192439-0.0042061480.9957938
ENST00000342449ENST00000337147BRWD1chr2140622722-EZRchr6159192439-0.0016088330.9983911
ENST00000342449ENST00000367075BRWD1chr2140622722-EZRchr6159192439-0.0015734710.99842656
ENST00000342449ENST00000392177BRWD1chr2140622722-EZRchr6159192439-0.0035736170.9964264
ENST00000380800ENST00000337147BRWD1chr2140622722-EZRchr6159192439-0.0016138760.99838614
ENST00000380800ENST00000367075BRWD1chr2140622722-EZRchr6159192439-0.0015776860.99842227
ENST00000380800ENST00000392177BRWD1chr2140622722-EZRchr6159192439-0.003497810.99650216

check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for BRWD1-EZR

check button +/-13 AA sequence from the breakpoints of the fusion protein sequences.
HgeneHchrHbpTgeneTchrTbpLength(fusion protein)BP in fusion proteinPeptide
BRWD1chr2140622722EZRchr61591924392428783IGRKRKTLQLSHKDFVFYAPRLRINK
BRWD1chr2140622722EZRchr61591924392448814IGRKRKTLQLSHKDFVFYAPRLRINK
BRWD1chr2140622722EZRchr61591924392677814IGRKRKTLQLSHKDFVFYAPRLRINK

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Potential FusionNeoAntigen Information of BRWD1-EZR in HLA I

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
BRWD1-EZR_40622722_159192439.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)
Fusion geneHchrHbpTgeneTchrTbpHLA IFusionNeoAntigen peptideBinding scoreImmunogenic scoreNeoantigen start (at BP 13)Neoantigen end (at BP 13)
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:18SHKDFVFY0.95160.50111018
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:25LSHKDFVFY0.99870.7171918
BRWD1-EZRchr2140622722chr61591924392677HLA-B39:06SHKDFVFYA0.99690.54891019
BRWD1-EZRchr2140622722chr61591924392677HLA-B57:01LSHKDFVFY0.99610.7902918
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:17LSHKDFVFY0.99460.6638918
BRWD1-EZRchr2140622722chr61591924392677HLA-B58:02LSHKDFVFY0.9910.6784918
BRWD1-EZRchr2140622722chr61591924392677HLA-B58:01LSHKDFVFY0.98930.5848918
BRWD1-EZRchr2140622722chr61591924392677HLA-B39:01SHKDFVFYA0.98090.72911019
BRWD1-EZRchr2140622722chr61591924392677HLA-A32:13QLSHKDFVF0.69260.8555817
BRWD1-EZRchr2140622722chr61591924392677HLA-B13:02LQLSHKDFV0.5740.5277716
BRWD1-EZRchr2140622722chr61591924392677HLA-B13:01QLSHKDFVF0.03220.836817
BRWD1-EZRchr2140622722chr61591924392677HLA-B57:01KTLQLSHKDF0.99920.9515
BRWD1-EZRchr2140622722chr61591924392677HLA-B58:02KTLQLSHKDF0.99730.8212515
BRWD1-EZRchr2140622722chr61591924392677HLA-B58:01KTLQLSHKDF0.99330.7184515
BRWD1-EZRchr2140622722chr61591924392677HLA-B39:06SHKDFVFYAP0.98640.58121020
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:16KTLQLSHKDF0.98640.5209515
BRWD1-EZRchr2140622722chr61591924392677HLA-B57:03KTLQLSHKDF0.98630.906515
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:17KTLQLSHKDF0.97820.748515
BRWD1-EZRchr2140622722chr61591924392677HLA-A32:13KTLQLSHKDF0.83140.8518515
BRWD1-EZRchr2140622722chr61591924392677HLA-C07:46SHKDFVFY0.99660.74321018
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:05LSHKDFVFY0.98360.6896918
BRWD1-EZRchr2140622722chr61591924392677HLA-B39:12SHKDFVFYA0.97740.73941019
BRWD1-EZRchr2140622722chr61591924392677HLA-B39:05SHKDFVFYA0.96970.69491019
BRWD1-EZRchr2140622722chr61591924392677HLA-C15:04LSHKDFVFY0.92740.8162918
BRWD1-EZRchr2140622722chr61591924392677HLA-C03:14LSHKDFVFY0.54630.9543918
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:05QLSHKDFVF0.5260.8313817
BRWD1-EZRchr2140622722chr61591924392677HLA-C07:17SHKDFVFY0.99390.93291018
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:39LSHKDFVFY0.99850.5826918
BRWD1-EZRchr2140622722chr61591924392677HLA-B57:10LSHKDFVFY0.99610.7902918
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:135LSHKDFVFY0.99180.7176918
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:20LSHKDFVFY0.98430.7517918
BRWD1-EZRchr2140622722chr61591924392677HLA-B39:31SHKDFVFYA0.98060.73081019
BRWD1-EZRchr2140622722chr61591924392677HLA-B35:28LSHKDFVFY0.96870.7598918
BRWD1-EZRchr2140622722chr61591924392677HLA-C03:02LSHKDFVFY0.9340.8696918
BRWD1-EZRchr2140622722chr61591924392677HLA-C15:09LSHKDFVFY0.92740.8162918
BRWD1-EZRchr2140622722chr61591924392677HLA-C12:02LSHKDFVFY0.76490.9433918
BRWD1-EZRchr2140622722chr61591924392677HLA-C16:04LSHKDFVFY0.63740.9681918
BRWD1-EZRchr2140622722chr61591924392677HLA-B15:20QLSHKDFVF0.54140.8815817
BRWD1-EZRchr2140622722chr61591924392677HLA-C16:01LSHKDFVFY0.47520.9382918
BRWD1-EZRchr2140622722chr61591924392677HLA-C16:02LSHKDFVFY0.26250.9701918
BRWD1-EZRchr2140622722chr61591924392677HLA-C02:02LSHKDFVFY0.00880.9172918
BRWD1-EZRchr2140622722chr61591924392677HLA-C02:10LSHKDFVFY0.00880.9172918
BRWD1-EZRchr2140622722chr61591924392677HLA-B57:10KTLQLSHKDF0.99920.9515
BRWD1-EZRchr2140622722chr61591924392677HLA-B58:06KTLQLSHKDF0.9960.5413515
BRWD1-EZRchr2140622722chr61591924392677HLA-B57:04KTLQLSHKDF0.9960.667515
BRWD1-EZRchr2140622722chr61591924392677HLA-B57:02KTLQLSHKDF0.97480.8295515
BRWD1-EZRchr2140622722chr61591924392677HLA-A32:01KTLQLSHKDF0.96070.8953515

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Potential FusionNeoAntigen Information of BRWD1-EZR in HLA II

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
BRWD1-EZR_40622722_159192439.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).
Fusion geneHchrHbpTgeneTchrTbpHLA IIFusionNeoAntigen peptideNeoantigen start (at BP 13)Neoantigen end (at BP 13)
BRWD1-EZRchr2140622722chr61591924392677DRB1-1102HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1113HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1113SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1114HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1114SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1116HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1117HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1117SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1120HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1120SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1121HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1134HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1136HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1141HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1145HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1148HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1152HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1152SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1159HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1164HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1165HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1168HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1169HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1170HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1182HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1182SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1186HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1186SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1189HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1189SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1192HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1301HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1302HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1302SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1304HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1308HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1309HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1315HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1316HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1316SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1317HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1319HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1320HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1322HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1323HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1323SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1327HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1329HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1331HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1331SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1332HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1334HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1334SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1335HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1336HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1339HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1339SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1341HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1341SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1343HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1344HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1348HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1351HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1352HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1353HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1354HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1357HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1359HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1361HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1364HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1367HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1368HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1369HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1370HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1371HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1372HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1373HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1373SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1374HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1374SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1375HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1376HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1377HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1378HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1379HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1380HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1383HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1384HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1385HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1386HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1387HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1391HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1392HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1393HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1396HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1396SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1397HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1397SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1398HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1399HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1399SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1401HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1401SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1402HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1403HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1404HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1404SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1405HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1405SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1406HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1407HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1407SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1408HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1408SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1411HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1411SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1412HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1414HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1416HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1417HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1418HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1418SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1419HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1420HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1421HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1423HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1423SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1424HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1424SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1426HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1426SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1428HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1428SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1429HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1430HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1431HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1431SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1432HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1432SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1433HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1434HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1435HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1435SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1436HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1437HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1438HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1438SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1438RKTLQLSHKDFVFYA419
BRWD1-EZRchr2140622722chr61591924392677DRB1-1439HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1439SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1440HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1441HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1442HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1442SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1443HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1443SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1444HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1445HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1445SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1446HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1447HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1449HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1450HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1450SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1451HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1452HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1454HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1454SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1455HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1455SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1456HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1456SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1458HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1458SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1459HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1459SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1460HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1460SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1461HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1461SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1462HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1462SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1462RKTLQLSHKDFVFYA419
BRWD1-EZRchr2140622722chr61591924392677DRB1-1464HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1464SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1465HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1465SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1467HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1468HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1468SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1470HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1470SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1471HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1471SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1472HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1472SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1473HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1474HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1475HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1475SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1475RKTLQLSHKDFVFYA419
BRWD1-EZRchr2140622722chr61591924392677DRB1-1475KRKTLQLSHKDFVFY318
BRWD1-EZRchr2140622722chr61591924392677DRB1-1477HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1478HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1480HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1481HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1481SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1482HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1482SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1482RKTLQLSHKDFVFYA419
BRWD1-EZRchr2140622722chr61591924392677DRB1-1482KRKTLQLSHKDFVFY318
BRWD1-EZRchr2140622722chr61591924392677DRB1-1483HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1486HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1486SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1487HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1487SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1488HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1488SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1489HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1489SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1490HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1490SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1491HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1491SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1493HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1494HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1495HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1495SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1495RKTLQLSHKDFVFYA419
BRWD1-EZRchr2140622722chr61591924392677DRB1-1496HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1496SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1497HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1497SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1498HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1499HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB1-1499SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB1-1499RKTLQLSHKDFVFYA419
BRWD1-EZRchr2140622722chr61591924392677DRB1-1531HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0102HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0102SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB5-0103HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0103SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB5-0103LSHKDFVFYAPRLRI924
BRWD1-EZRchr2140622722chr61591924392677DRB5-0104HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0104SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB5-0106HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0106SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB5-0108NHKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0108NSHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB5-0111HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0111SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB5-0111LSHKDFVFYAPRLRI924
BRWD1-EZRchr2140622722chr61591924392677DRB5-0202HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0202SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB5-0203HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0203SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB5-0203LSHKDFVFYAPRLRI924
BRWD1-EZRchr2140622722chr61591924392677DRB5-0203QLSHKDFVFYAPRLR823
BRWD1-EZRchr2140622722chr61591924392677DRB5-0204HKDFVFYAPRLRINK1126
BRWD1-EZRchr2140622722chr61591924392677DRB5-0204SHKDFVFYAPRLRIN1025
BRWD1-EZRchr2140622722chr61591924392677DRB5-0205HKDFVFYAPRLRINK1126

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Fusion breakpoint peptide structures of BRWD1-EZR

check button3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.
File nameBPseqHgeneTgeneHchrHbpTchrTbpAAlen
9488TLQLSHKDFVFYAPBRWD1EZRchr2140622722chr61591924392677

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of BRWD1-EZR

check buttonVirtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.
HLA allelePDB IDFile nameBPseqDocking scoreGlide score
HLA-B14:023BVN9488TLQLSHKDFVFYAP-7.15543-7.26883
HLA-B14:023BVN9488TLQLSHKDFVFYAP-4.77435-5.80965
HLA-B52:013W399488TLQLSHKDFVFYAP-6.80875-6.92215
HLA-B52:013W399488TLQLSHKDFVFYAP-4.20386-5.23916
HLA-A11:014UQ29488TLQLSHKDFVFYAP-7.5194-8.5547
HLA-A11:014UQ29488TLQLSHKDFVFYAP-6.9601-7.0735
HLA-A24:025HGA9488TLQLSHKDFVFYAP-7.52403-7.63743
HLA-A24:025HGA9488TLQLSHKDFVFYAP-5.82433-6.85963
HLA-B27:056PYJ9488TLQLSHKDFVFYAP-3.28285-4.31815
HLA-B44:053DX89488TLQLSHKDFVFYAP-5.91172-6.94702
HLA-B44:053DX89488TLQLSHKDFVFYAP-4.24346-4.35686

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Vaccine Design for the FusionNeoAntigens of BRWD1-EZR

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptide sequenceFusionNeoAntigen RNA sequence
BRWD1-EZRchr2140622722chr61591924391018SHKDFVFYTCACATAAGGACTTTGTGTTTTAT
BRWD1-EZRchr2140622722chr61591924391019SHKDFVFYATCACATAAGGACTTTGTGTTTTATGCC
BRWD1-EZRchr2140622722chr61591924391020SHKDFVFYAPTCACATAAGGACTTTGTGTTTTATGCCCCA
BRWD1-EZRchr2140622722chr6159192439515KTLQLSHKDFAAGACTCTTCAGCTCTCACATAAGGACTTT
BRWD1-EZRchr2140622722chr6159192439716LQLSHKDFVCTTCAGCTCTCACATAAGGACTTTGTG
BRWD1-EZRchr2140622722chr6159192439817QLSHKDFVFCAGCTCTCACATAAGGACTTTGTGTTT
BRWD1-EZRchr2140622722chr6159192439918LSHKDFVFYCTCTCACATAAGGACTTTGTGTTTTAT

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptideFusionNEoAntigen RNA sequence
BRWD1-EZRchr2140622722chr61591924391025SHKDFVFYAPRLRINTCACATAAGGACTTTGTGTTTTATGCCCCACGTCTGAGAATCAAC
BRWD1-EZRchr2140622722chr61591924391126HKDFVFYAPRLRINKCATAAGGACTTTGTGTTTTATGCCCCACGTCTGAGAATCAACAAG
BRWD1-EZRchr2140622722chr6159192439318KRKTLQLSHKDFVFYAAAAGAAAGACTCTTCAGCTCTCACATAAGGACTTTGTGTTTTAT
BRWD1-EZRchr2140622722chr6159192439419RKTLQLSHKDFVFYAAGAAAGACTCTTCAGCTCTCACATAAGGACTTTGTGTTTTATGCC
BRWD1-EZRchr2140622722chr6159192439823QLSHKDFVFYAPRLRCAGCTCTCACATAAGGACTTTGTGTTTTATGCCCCACGTCTGAGA
BRWD1-EZRchr2140622722chr6159192439924LSHKDFVFYAPRLRICTCTCACATAAGGACTTTGTGTTTTATGCCCCACGTCTGAGAATC

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Information of the samples that have these potential fusion neoantigens of BRWD1-EZR

check button These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.
Cancer typeFusion geneHchrHbpHenstTchrTbpTenstSample
STADBRWD1-EZRchr2140622722ENST00000333229chr6159192439ENST00000337147TCGA-BR-8078-01A

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Potential target of CAR-T therapy development for BRWD1-EZR

check button Predicted 3D structure. We used RoseTTAFold.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features


* Minus value of BPloci means that the break point is located before the CDS.
- In-frame and retained 'Transmembrane'.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

check button Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.
HgeneHchrHbpHenstTgeneTchrTbpTenstDeepLoc result

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Related Drugs to BRWD1-EZR

check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to BRWD1-EZR

check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneEZRC0033578Prostatic Neoplasms3CTD_human
TgeneEZRC0376358Malignant neoplasm of prostate3CTD_human
TgeneEZRC0007097Carcinoma1CTD_human
TgeneEZRC0023893Liver Cirrhosis, Experimental1CTD_human
TgeneEZRC0024667Animal Mammary Neoplasms1CTD_human
TgeneEZRC0024668Mammary Neoplasms, Experimental1CTD_human
TgeneEZRC0027627Neoplasm Metastasis1CTD_human
TgeneEZRC0029408Degenerative polyarthritis1CTD_human
TgeneEZRC0086743Osteoarthrosis Deformans1CTD_human
TgeneEZRC0205696Anaplastic carcinoma1CTD_human
TgeneEZRC0205697Carcinoma, Spindle-Cell1CTD_human
TgeneEZRC0205698Undifferentiated carcinoma1CTD_human
TgeneEZRC0205699Carcinomatosis1CTD_human
TgeneEZRC1257925Mammary Carcinoma, Animal1CTD_human