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Fusion Protein:CC2D1A-ZMYND8 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: CC2D1A-ZMYND8 | FusionPDB ID: 13504 | FusionGDB2.0 ID: 13504 | Hgene | Tgene | Gene symbol | CC2D1A | ZMYND8 | Gene ID | 54862 | 23613 |
Gene name | coiled-coil and C2 domain containing 1A | zinc finger MYND-type containing 8 | |
Synonyms | FREUD-1|Freud-1/Aki1|MRT3 | PRKCBP1|PRO2893|RACK7 | |
Cytomap | 19p13.12 | 20q13.12 | |
Type of gene | protein-coding | protein-coding | |
Description | coiled-coil and C2 domain-containing protein 1AAkt kinase-interacting protein 1FRE under dual repression-binding protein 1five prime repressor element under dual repression-binding protein 1five repressor element under dual repression-binding protein | protein kinase C-binding protein 1CTCL tumor antigen se14-3cutaneous T-cell lymphoma-associated antigen se14-3predicted protein of HQ2893zinc finger MYND domain-containing protein 8 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q6P1N0 Main function of 5'-partner protein: FUNCTION: Transcription factor that binds specifically to the DRE (dual repressor element) and represses HTR1A gene transcription in neuronal cells. The combination of calcium and ATP specifically inactivates the binding with FRE. May play a role in the altered regulation of HTR1A associated with anxiety and major depression. Mediates HDAC-independent repression of HTR1A promoter in neuronal cell. Performs essential function in controlling functional maturation of synapses (By similarity). Plays distinct roles depending on its localization. When cytoplasmic, acts as a scaffold protein in the PI3K/PDK1/AKT pathway. Repressor of HTR1A when nuclear. In the centrosome, regulates spindle pole localization of the cohesin subunit SCC1/RAD21, thereby mediating centriole cohesion during mitosis. {ECO:0000250, ECO:0000269|PubMed:20171170}. | . | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000318003, ENST00000589606, | ENST00000468376, ENST00000262975, ENST00000311275, ENST00000352431, ENST00000355972, ENST00000360911, ENST00000372023, ENST00000396281, ENST00000446994, ENST00000458360, ENST00000461685, ENST00000471951, ENST00000536340, ENST00000540497, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 10 X 10 X 7=700 | 10 X 12 X 6=720 |
# samples | 12 | 13 | |
** MAII score | log2(12/700*10)=-2.54432051622381 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(13/720*10)=-2.46948528330122 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: CC2D1A [Title/Abstract] AND ZMYND8 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: CC2D1A [Title/Abstract] AND ZMYND8 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | CC2D1A(14030015)-ZMYND8(45938948), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | CC2D1A-ZMYND8 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CC2D1A-ZMYND8 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CC2D1A-ZMYND8 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. CC2D1A-ZMYND8 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:14030015/chr20:45938948) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000311275 | ZMYND8 | chr20 | 45938948 | - | 6546 | 1463 | 235 | 4998 | 1587 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000360911 | ZMYND8 | chr20 | 45938948 | - | 6333 | 1463 | 235 | 4785 | 1516 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000458360 | ZMYND8 | chr20 | 45938948 | - | 5057 | 1463 | 235 | 4542 | 1435 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000262975 | ZMYND8 | chr20 | 45938948 | - | 5293 | 1463 | 235 | 4944 | 1569 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000471951 | ZMYND8 | chr20 | 45938948 | - | 5404 | 1463 | 235 | 5082 | 1615 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000352431 | ZMYND8 | chr20 | 45938948 | - | 5181 | 1463 | 235 | 4860 | 1541 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000396281 | ZMYND8 | chr20 | 45938948 | - | 5225 | 1463 | 235 | 4923 | 1562 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000446994 | ZMYND8 | chr20 | 45938948 | - | 4812 | 1463 | 235 | 4755 | 1506 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000536340 | ZMYND8 | chr20 | 45938948 | - | 5139 | 1463 | 235 | 5082 | 1615 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000355972 | ZMYND8 | chr20 | 45938948 | - | 5139 | 1463 | 235 | 5082 | 1615 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000540497 | ZMYND8 | chr20 | 45938948 | - | 4783 | 1463 | 235 | 4782 | 1516 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000461685 | ZMYND8 | chr20 | 45938948 | - | 4945 | 1463 | 235 | 4944 | 1570 |
ENST00000318003 | CC2D1A | chr19 | 14030015 | + | ENST00000372023 | ZMYND8 | chr20 | 45938948 | - | 4789 | 1463 | 235 | 4788 | 1518 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000311275 | ZMYND8 | chr20 | 45938948 | - | 6305 | 1222 | 0 | 4757 | 1585 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000360911 | ZMYND8 | chr20 | 45938948 | - | 6092 | 1222 | 0 | 4544 | 1514 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000458360 | ZMYND8 | chr20 | 45938948 | - | 4816 | 1222 | 0 | 4301 | 1433 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000262975 | ZMYND8 | chr20 | 45938948 | - | 5052 | 1222 | 0 | 4703 | 1567 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000471951 | ZMYND8 | chr20 | 45938948 | - | 5163 | 1222 | 0 | 4841 | 1613 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000352431 | ZMYND8 | chr20 | 45938948 | - | 4940 | 1222 | 0 | 4619 | 1539 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000396281 | ZMYND8 | chr20 | 45938948 | - | 4984 | 1222 | 0 | 4682 | 1560 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000446994 | ZMYND8 | chr20 | 45938948 | - | 4571 | 1222 | 0 | 4514 | 1504 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000536340 | ZMYND8 | chr20 | 45938948 | - | 4898 | 1222 | 0 | 4841 | 1613 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000355972 | ZMYND8 | chr20 | 45938948 | - | 4898 | 1222 | 0 | 4841 | 1613 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000540497 | ZMYND8 | chr20 | 45938948 | - | 4542 | 1222 | 0 | 4541 | 1513 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000461685 | ZMYND8 | chr20 | 45938948 | - | 4704 | 1222 | 0 | 4703 | 1567 |
ENST00000589606 | CC2D1A | chr19 | 14030015 | + | ENST00000372023 | ZMYND8 | chr20 | 45938948 | - | 4548 | 1222 | 0 | 4547 | 1515 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000318003 | ENST00000311275 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.002173052 | 0.9978269 |
ENST00000318003 | ENST00000360911 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.001520292 | 0.99847966 |
ENST00000318003 | ENST00000458360 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.003831165 | 0.9961688 |
ENST00000318003 | ENST00000262975 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.004651177 | 0.9953489 |
ENST00000318003 | ENST00000471951 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.005139958 | 0.99486005 |
ENST00000318003 | ENST00000352431 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.003656407 | 0.99634355 |
ENST00000318003 | ENST00000396281 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.005430188 | 0.99456984 |
ENST00000318003 | ENST00000446994 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.00669546 | 0.99330455 |
ENST00000318003 | ENST00000536340 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.006775352 | 0.9932247 |
ENST00000318003 | ENST00000355972 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.006775352 | 0.9932247 |
ENST00000318003 | ENST00000540497 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.007141856 | 0.9928582 |
ENST00000318003 | ENST00000461685 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.007033649 | 0.9929664 |
ENST00000318003 | ENST00000372023 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.003821933 | 0.99617803 |
ENST00000589606 | ENST00000311275 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.001609756 | 0.9983903 |
ENST00000589606 | ENST00000360911 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.001066062 | 0.998934 |
ENST00000589606 | ENST00000458360 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.00276012 | 0.9972398 |
ENST00000589606 | ENST00000262975 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.003425253 | 0.99657476 |
ENST00000589606 | ENST00000471951 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.003872771 | 0.9961273 |
ENST00000589606 | ENST00000352431 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.002696618 | 0.99730337 |
ENST00000589606 | ENST00000396281 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.004114837 | 0.9958852 |
ENST00000589606 | ENST00000446994 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.004912549 | 0.99508744 |
ENST00000589606 | ENST00000536340 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.005134883 | 0.9948651 |
ENST00000589606 | ENST00000355972 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.005134883 | 0.9948651 |
ENST00000589606 | ENST00000540497 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.005393984 | 0.9946061 |
ENST00000589606 | ENST00000461685 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.005237249 | 0.9947627 |
ENST00000589606 | ENST00000372023 | CC2D1A | chr19 | 14030015 | + | ZMYND8 | chr20 | 45938948 | - | 0.002836971 | 0.997163 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for CC2D1A-ZMYND8 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
CC2D1A | chr19 | 14030015 | ZMYND8 | chr20 | 45938948 | 1222 | 407 | GRAVDVAELPVPPDPGSAERTAQKRK |
CC2D1A | chr19 | 14030015 | ZMYND8 | chr20 | 45938948 | 1463 | 409 | GRAVDVAELPVPPDPGSAERTAQKRK |
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Potential FusionNeoAntigen Information of CC2D1A-ZMYND8 in HLA I |
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CC2D1A-ZMYND8_14030015_45938948.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B45:01 | AELPVPPDP | 0.9883 | 0.9875 | 6 | 15 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B50:02 | AELPVPPDP | 0.9821 | 0.8059 | 6 | 15 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B41:01 | AELPVPPDP | 0.4211 | 0.9879 | 6 | 15 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B50:01 | AELPVPPDP | 0.3976 | 0.9342 | 6 | 15 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B56:01 | LPVPPDPGSA | 0.9726 | 0.6848 | 8 | 18 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B55:01 | LPVPPDPGSA | 0.9485 | 0.5791 | 8 | 18 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B54:01 | LPVPPDPGS | 0.9799 | 0.8163 | 8 | 17 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B40:06 | AELPVPPDP | 0.9711 | 0.9493 | 6 | 15 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B54:01 | LPVPPDPGSA | 0.9952 | 0.8924 | 8 | 18 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B56:04 | LPVPPDPGSA | 0.8547 | 0.8322 | 8 | 18 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B78:01 | LPVPPDPGSA | 0.619 | 0.7207 | 8 | 18 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B55:02 | LPVPPDPGS | 0.8301 | 0.5758 | 8 | 17 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B50:05 | AELPVPPDP | 0.3976 | 0.9342 | 6 | 15 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B50:04 | AELPVPPDP | 0.3976 | 0.9342 | 6 | 15 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B55:02 | LPVPPDPGSA | 0.9763 | 0.7613 | 8 | 18 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B56:02 | LPVPPDPGSA | 0.8547 | 0.8322 | 8 | 18 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B56:05 | LPVPPDPGSA | 0.8405 | 0.6393 | 8 | 18 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | HLA-B78:02 | LPVPPDPGSA | 0.5939 | 0.7589 | 8 | 18 |
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Potential FusionNeoAntigen Information of CC2D1A-ZMYND8 in HLA II |
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CC2D1A-ZMYND8_14030015_45938948.msa |
![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | DRB1-0411 | AVDVAELPVPPDPGS | 2 | 17 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | DRB1-0411 | RAVDVAELPVPPDPG | 1 | 16 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | DRB1-0467 | AVDVAELPVPPDPGS | 2 | 17 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | DRB1-0467 | RAVDVAELPVPPDPG | 1 | 16 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | DRB1-0491 | AVDVAELPVPPDPGS | 2 | 17 |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 | DRB1-0491 | RAVDVAELPVPPDPG | 1 | 16 |
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Fusion breakpoint peptide structures of CC2D1A-ZMYND8 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
162 | AELPVPPDPGSAER | CC2D1A | ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1463 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of CC2D1A-ZMYND8 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 162 | AELPVPPDPGSAER | -4.98419 | -5.17619 |
HLA-B14:02 | 3BVN | 162 | AELPVPPDPGSAER | -3.82803 | -4.58903 |
HLA-B52:01 | 3W39 | 162 | AELPVPPDPGSAER | -7.13483 | -7.32683 |
HLA-B52:01 | 3W39 | 162 | AELPVPPDPGSAER | -4.52031 | -5.28131 |
HLA-A24:02 | 5HGA | 162 | AELPVPPDPGSAER | -8.1238 | -8.3158 |
HLA-A24:02 | 5HGA | 162 | AELPVPPDPGSAER | -5.63898 | -6.39998 |
HLA-B44:05 | 3DX8 | 162 | AELPVPPDPGSAER | -5.10902 | -5.87002 |
HLA-B44:05 | 3DX8 | 162 | AELPVPPDPGSAER | -3.5494 | -3.7414 |
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Vaccine Design for the FusionNeoAntigens of CC2D1A-ZMYND8 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 6 | 15 | AELPVPPDP | CTGAATTGCCCGTGCCCCCAGATCCTG |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 8 | 17 | LPVPPDPGS | TGCCCGTGCCCCCAGATCCTGGCTCTG |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 8 | 18 | LPVPPDPGSA | TGCCCGTGCCCCCAGATCCTGGCTCTGCAG |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 1 | 16 | RAVDVAELPVPPDPG | GAGCCGTGGATGTCGCTGAATTGCCCGTGCCCCCAGATCCTGGCT |
CC2D1A-ZMYND8 | chr19 | 14030015 | chr20 | 45938948 | 2 | 17 | AVDVAELPVPPDPGS | CCGTGGATGTCGCTGAATTGCCCGTGCCCCCAGATCCTGGCTCTG |
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Information of the samples that have these potential fusion neoantigens of CC2D1A-ZMYND8 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
PCPG | CC2D1A-ZMYND8 | chr19 | 14030015 | ENST00000318003 | chr20 | 45938948 | ENST00000262975 | TCGA-WB-A818-01A |
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Potential target of CAR-T therapy development for CC2D1A-ZMYND8 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to CC2D1A-ZMYND8 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to CC2D1A-ZMYND8 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |