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Fusion Protein:CPM-CCT2 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: CPM-CCT2 | FusionPDB ID: 18986 | FusionGDB2.0 ID: 18986 | Hgene | Tgene | Gene symbol | CPM | CCT2 | Gene ID | 1368 | 10576 |
Gene name | carboxypeptidase M | chaperonin containing TCP1 subunit 2 | |
Synonyms | - | 99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta | |
Cytomap | 12q15 | 12q15 | |
Type of gene | protein-coding | protein-coding | |
Description | carboxypeptidase Mrenal carboxypeptidaseurinary carboxypeptidase B | T-complex protein 1 subunit betaT-complex protein 1, beta subunitchaperonin containing TCP1, subunit 2 (beta)chaperonin containing t-complex polypeptide 1, beta subunitchaperonin containing t-complex polypeptide 1, subunit 2epididymis secretory sperm | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | P14384 Main function of 5'-partner protein: FUNCTION: Specifically removes C-terminal basic residues (Arg or Lys) from peptides and proteins. It is believed to play important roles in the control of peptide hormone and growth factor activity at the cell surface, and in the membrane-localized degradation of extracellular proteins. {ECO:0000269|PubMed:12457462}. | P78371 Main function of 5'-partner protein: FUNCTION: Component of the chaperonin-containing T-complex (TRiC), a molecular chaperone complex that assists the folding of proteins upon ATP hydrolysis (PubMed:25467444). The TRiC complex mediates the folding of WRAP53/TCAB1, thereby regulating telomere maintenance (PubMed:25467444). As part of the TRiC complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia (PubMed:20080638). The TRiC complex plays a role in the folding of actin and tubulin (Probable). {ECO:0000269|PubMed:20080638, ECO:0000269|PubMed:25467444, ECO:0000305}. | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000338356, ENST00000546373, ENST00000551568, ENST00000549691, | ENST00000299300, ENST00000543146, ENST00000544368, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 15 X 8 X 7=840 | 14 X 13 X 9=1638 |
# samples | 17 | 16 | |
** MAII score | log2(17/840*10)=-2.30485458152842 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(16/1638*10)=-3.35579154675365 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: CPM [Title/Abstract] AND CCT2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: CPM [Title/Abstract] AND CCT2 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | CCT2(69979304)-CPM(69252851), # samples:3 CPM(69279572)-CCT2(69986756), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | CCT2-CPM seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF. CCT2-CPM seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. CCT2-CPM seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. CPM-CCT2 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. CPM-CCT2 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. CPM-CCT2 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:69979304/chr12:69252851) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000338356 | CPM | chr12 | 69279572 | - | ENST00000299300 | CCT2 | chr12 | 69986756 | + | 1408 | 305 | 47 | 1162 | 371 |
ENST00000338356 | CPM | chr12 | 69279572 | - | ENST00000544368 | CCT2 | chr12 | 69986756 | + | 1221 | 305 | 47 | 1147 | 366 |
ENST00000338356 | CPM | chr12 | 69279572 | - | ENST00000543146 | CCT2 | chr12 | 69986756 | + | 1403 | 305 | 47 | 1162 | 371 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000338356 | ENST00000299300 | CPM | chr12 | 69279572 | - | CCT2 | chr12 | 69986756 | + | 0.000467099 | 0.99953294 |
ENST00000338356 | ENST00000544368 | CPM | chr12 | 69279572 | - | CCT2 | chr12 | 69986756 | + | 0.00044735 | 0.99955267 |
ENST00000338356 | ENST00000543146 | CPM | chr12 | 69279572 | - | CCT2 | chr12 | 69986756 | + | 0.000478277 | 0.99952173 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for CPM-CCT2 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
CPM | chr12 | 69279572 | CCT2 | chr12 | 69986756 | 305 | 86 | PEFKYVANMHGDEIFGSRVRVDSTAK |
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Potential FusionNeoAntigen Information of CPM-CCT2 in HLA I |
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CPM-CCT2_69279572_69986756.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-B18:01 | DEIFGSRV | 0.9962 | 0.9145 | 11 | 19 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-A66:01 | EIFGSRVRV | 0.9984 | 0.6044 | 12 | 21 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-A26:03 | EIFGSRVRV | 0.9927 | 0.6279 | 12 | 21 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-A26:02 | EIFGSRVRV | 0.9723 | 0.5193 | 12 | 21 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-A26:14 | EIFGSRVRV | 0.9513 | 0.605 | 12 | 21 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-A26:15 | EIFGSRVRV | 0.9513 | 0.605 | 12 | 21 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-A26:01 | EIFGSRVRV | 0.9513 | 0.605 | 12 | 21 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-C08:04 | VANMHGDEI | 0.6473 | 0.9448 | 5 | 14 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-C08:13 | VANMHGDEI | 0.6473 | 0.9448 | 5 | 14 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-C08:03 | VANMHGDEI | 0.1652 | 0.9736 | 5 | 14 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-B18:05 | DEIFGSRV | 0.9962 | 0.9145 | 11 | 19 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-B18:06 | DEIFGSRV | 0.9961 | 0.9212 | 11 | 19 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-B18:03 | DEIFGSRV | 0.992 | 0.9092 | 11 | 19 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-A68:02 | EIFGSRVRV | 0.9978 | 0.7579 | 12 | 21 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-A69:01 | EIFGSRVRV | 0.993 | 0.7656 | 12 | 21 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-A25:01 | EIFGSRVRV | 0.9807 | 0.9218 | 12 | 21 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-B18:06 | DEIFGSRVR | 0.9343 | 0.9538 | 11 | 20 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-C03:06 | VANMHGDEI | 0.8026 | 0.9894 | 5 | 14 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | HLA-C08:01 | VANMHGDEI | 0.1652 | 0.9736 | 5 | 14 |
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Potential FusionNeoAntigen Information of CPM-CCT2 in HLA II |
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CPM-CCT2_69279572_69986756.msa |
![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0401 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0403 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0407 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0415 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0419 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0424 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0427 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0431 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0433 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0434 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0435 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0436 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0438 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0439 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0441 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0443 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0446 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0447 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0449 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0450 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0451 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0452 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0453 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0454 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0458 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0459 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0460 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0461 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0462 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0463 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0464 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0465 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0469 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0471 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0472 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0474 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0475 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0476 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0478 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0480 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0482 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0485 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0486 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0488 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0815 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-0830 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1130 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1367 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1446 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1511 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1515 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1527 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1531 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1534 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1601 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1602 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1603 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1604 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1605 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1607 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1608 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1609 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1610 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1611 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1612 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1614 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB1-1616 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB5-0102 | PEFKYVANMHGDEIF | 0 | 15 |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 | DRB5-0108N | PEFKYVANMHGDEIF | 0 | 15 |
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Fusion breakpoint peptide structures of CPM-CCT2 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
455 | ANMHGDEIFGSRVR | CPM | CCT2 | chr12 | 69279572 | chr12 | 69986756 | 305 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of CPM-CCT2 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 455 | ANMHGDEIFGSRVR | -7.9962 | -8.1096 |
HLA-B14:02 | 3BVN | 455 | ANMHGDEIFGSRVR | -5.70842 | -6.74372 |
HLA-B52:01 | 3W39 | 455 | ANMHGDEIFGSRVR | -6.83737 | -6.95077 |
HLA-B52:01 | 3W39 | 455 | ANMHGDEIFGSRVR | -4.4836 | -5.5189 |
HLA-A11:01 | 4UQ2 | 455 | ANMHGDEIFGSRVR | -10.0067 | -10.1201 |
HLA-A11:01 | 4UQ2 | 455 | ANMHGDEIFGSRVR | -9.03915 | -10.0745 |
HLA-A24:02 | 5HGA | 455 | ANMHGDEIFGSRVR | -6.56204 | -6.67544 |
HLA-A24:02 | 5HGA | 455 | ANMHGDEIFGSRVR | -5.42271 | -6.45801 |
HLA-B44:05 | 3DX8 | 455 | ANMHGDEIFGSRVR | -7.85648 | -8.89178 |
HLA-B44:05 | 3DX8 | 455 | ANMHGDEIFGSRVR | -5.3978 | -5.5112 |
HLA-A02:01 | 6TDR | 455 | ANMHGDEIFGSRVR | -3.37154 | -4.40684 |
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Vaccine Design for the FusionNeoAntigens of CPM-CCT2 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 11 | 19 | DEIFGSRV | GATGAGATATTTGGTTCCCGGGTA |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 11 | 20 | DEIFGSRVR | GATGAGATATTTGGTTCCCGGGTAAGA |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 12 | 21 | EIFGSRVRV | GAGATATTTGGTTCCCGGGTAAGAGTT |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 5 | 14 | VANMHGDEI | GTGGCAAATATGCATGGAGATGAGATA |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
CPM-CCT2 | chr12 | 69279572 | chr12 | 69986756 | 0 | 15 | PEFKYVANMHGDEIF | CCAGAGTTCAAATACGTGGCAAATATGCATGGAGATGAGATATTT |
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Information of the samples that have these potential fusion neoantigens of CPM-CCT2 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
SARC | CPM-CCT2 | chr12 | 69279572 | ENST00000338356 | chr12 | 69986756 | ENST00000299300 | TCGA-DX-A1KU-01A |
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Potential target of CAR-T therapy development for CPM-CCT2 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to CPM-CCT2 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to CPM-CCT2 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |