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Center for Computational Systems Medicine
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Fusion Gene and Fusion Protein Summary

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Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)

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Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)

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Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)

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Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)

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Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)

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Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)

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Potential target of CAR-T therapy development

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Information on the samples that have these potential fusion neoantigens

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Fusion Protein Targeting Drugs - (Manual Curation)

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Fusion Protein Related diseases - (Manual Curation)

Fusion Protein:ENTPD6-ADRM1

Fusion Gene and Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: ENTPD6-ADRM1
FusionPDB ID: 26713
FusionGDB2.0 ID: 26713
HgeneTgene
Gene symbol

ENTPD6

ADRM1

Gene ID

955

11047

Gene nameectonucleoside triphosphate diphosphohydrolase 6adhesion regulating molecule 1
SynonymsCD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3ARM-1|ARM1|GP110
Cytomap

20p11.21

20q13.33

Type of geneprotein-codingprotein-coding
Descriptionectonucleoside triphosphate diphosphohydrolase 6CD39 antigen-like 2NTPDase 6ectonucleoside triphosphate diphosphohydrolase 6 (putative)interleukin 6 signal transducer-2proteasomal ubiquitin receptor ADRM1110 kDa cell membrane glycoproteinM(r) 110,000 surface antigenproteasome regulatory particle non-ATPase 13proteasome ubiquitin receptorrpn13 homolog
Modification date2020031320200313
UniProtAcc

O75354

Main function of 5'-partner protein: FUNCTION: Catalyzes the hydrolysis of nucleoside triphosphates and diphosphates in a calcium- or magnesium-dependent manner. Has a strong preference for nucleoside diphosphates, preferentially hydrolyzes GDP, IDP, and UDP, with slower hydrolysis of CDP, ITP, GTP, CTP, ADP, and UTP and virtually no hydrolysis of ATP (PubMed:10948193, PubMed:14529283, PubMed:11041856). The membrane bound form might support glycosylation reactions in the Golgi apparatus and, when released from cells, might catalyze the hydrolysis of extracellular nucleotides (PubMed:10948193, PubMed:14529283, PubMed:11041856). {ECO:0000269|PubMed:10948193, ECO:0000269|PubMed:11041856, ECO:0000269|PubMed:14529283}.

Q16186

Main function of 5'-partner protein: FUNCTION: Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair. Within the complex, functions as a proteasomal ubiquitin receptor. Engages and activates 19S-associated deubiquitinases UCHL5 and PSMD14 during protein degradation. UCHL5 reversibly associate with the 19S regulatory particle whereas PSMD14 is an intrinsic subunit of the proteasome lid subcomplex. {ECO:0000269|PubMed:16815440, ECO:0000269|PubMed:16906146, ECO:0000269|PubMed:16990800, ECO:0000269|PubMed:17139257, ECO:0000269|PubMed:18497817, ECO:0000269|PubMed:24752541, ECO:0000269|PubMed:25702870, ECO:0000269|PubMed:25702872}.
Ensembl transtripts involved in fusion geneENST idsENST00000485936, ENST00000354989, 
ENST00000360031, ENST00000376652, 
ENST00000433259, 
ENST00000253003, 
ENST00000462554, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score8 X 7 X 4=2248 X 6 X 5=240
# samples 88
** MAII scorelog2(8/224*10)=-1.48542682717024
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(8/240*10)=-1.58496250072116
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Fusion gene context

PubMed: ENTPD6 [Title/Abstract] AND ADRM1 [Title/Abstract] AND fusion [Title/Abstract]

Fusion neoantigen context

PubMed: ENTPD6 [Title/Abstract] AND ADRM1 [Title/Abstract] AND neoantigen [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)ENTPD6(25205953)-ADRM1(60882426), # samples:1
Anticipated loss of major functional domain due to fusion event.ENTPD6-ADRM1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
ENTPD6-ADRM1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
ENTPD6-ADRM1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
ENTPD6-ADRM1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
ENTPD6-ADRM1 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
ENTPD6-ADRM1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneADRM1

GO:0043248

proteasome assembly

16990800



check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr20:25205953/chr20:60882426)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonRetention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

check buttonFusion gene breakpoints across ENTPD6 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across ADRM1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Amino Acid Sequences


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000433259ENTPD6chr2025205953+ENST00000253003ADRM1chr2060882426+220714231262105659

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000433259ENST00000253003ENTPD6chr2025205953+ADRM1chr2060882426+0.014822790.9851773

check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for ENTPD6-ADRM1

check button +/-13 AA sequence from the breakpoints of the fusion protein sequences.
HgeneHchrHbpTgeneTchrTbpLength(fusion protein)BP in fusion proteinPeptide
ENTPD6chr2025205953ADRM1chr20608824261423432TPGVRLSQEQSAEGGLGALTGPGLAS

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Potential FusionNeoAntigen Information of ENTPD6-ADRM1 in HLA I

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
ENTPD6-ADRM1_25205953_60882426.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)
Fusion geneHchrHbpTgeneTchrTbpHLA IFusionNeoAntigen peptideBinding scoreImmunogenic scoreNeoantigen start (at BP 13)Neoantigen end (at BP 13)
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B45:01AEGGLGALT0.84390.98991120
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B50:02AEGGLGALT0.82070.86091120
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B45:01QEQSAEGGLGA0.99620.9851718
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B50:02QEQSAEGGLGA0.99380.963718
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B50:01QEQSAEGGLGA0.99280.9881718
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B41:01QEQSAEGGLGA0.9910.9742718
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B39:08AEGGLGAL0.960.97731119
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C05:09SAEGGLGAL0.99970.98541019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C08:15SAEGGLGAL0.99950.98941019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C03:19SAEGGLGAL0.99430.99681019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C03:08SAEGGLGAL0.98090.96311019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C08:13SAEGGLGAL0.88430.98631019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C08:04SAEGGLGAL0.88430.98631019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C08:03SAEGGLGAL0.70570.99511019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B41:03AEGGLGAL0.88420.95231119
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C05:01SAEGGLGAL0.99970.98541019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C08:02SAEGGLGAL0.99950.98941019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C03:04SAEGGLGAL0.99440.9961019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C03:03SAEGGLGAL0.99440.9961019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C03:05SAEGGLGAL0.98160.95461019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B40:04QEQSAEGGL0.96990.8097716
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C03:06SAEGGLGAL0.87530.99641019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-C08:01SAEGGLGAL0.70570.99511019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B35:13SAEGGLGAL0.5120.91021019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B41:03QEQSAEGGL0.34170.8816716
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B07:13SAEGGLGAL0.25860.80041019
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B50:05QEQSAEGGLGA0.99280.9881718
ENTPD6-ADRM1chr2025205953chr20608824261423HLA-B50:04QEQSAEGGLGA0.99280.9881718

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Potential FusionNeoAntigen Information of ENTPD6-ADRM1 in HLA II

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
ENTPD6-ADRM1_25205953_60882426.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).
Fusion geneHchrHbpTgeneTchrTbpHLA IIFusionNeoAntigen peptideNeoantigen start (at BP 13)Neoantigen end (at BP 13)
ENTPD6-ADRM1chr2025205953chr20608824261423DRB1-0102AEGGLGALTGPGLAS1126
ENTPD6-ADRM1chr2025205953chr20608824261423DRB1-0413GVRLSQEQSAEGGLG217
ENTPD6-ADRM1chr2025205953chr20608824261423DRB1-0906TPGVRLSQEQSAEGG015
ENTPD6-ADRM1chr2025205953chr20608824261423DRB1-1523TPGVRLSQEQSAEGG015

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Fusion breakpoint peptide structures of ENTPD6-ADRM1

check button3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.
File nameBPseqHgeneTgeneHchrHbpTchrTbpAAlen
8914SQEQSAEGGLGALTENTPD6ADRM1chr2025205953chr20608824261423

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of ENTPD6-ADRM1

check buttonVirtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.
HLA allelePDB IDFile nameBPseqDocking scoreGlide score
HLA-B14:023BVN8914SQEQSAEGGLGALT-7.9962-8.1096
HLA-B14:023BVN8914SQEQSAEGGLGALT-5.70842-6.74372
HLA-B52:013W398914SQEQSAEGGLGALT-6.83737-6.95077
HLA-B52:013W398914SQEQSAEGGLGALT-4.4836-5.5189
HLA-A11:014UQ28914SQEQSAEGGLGALT-10.0067-10.1201
HLA-A11:014UQ28914SQEQSAEGGLGALT-9.03915-10.0745
HLA-A24:025HGA8914SQEQSAEGGLGALT-6.56204-6.67544
HLA-A24:025HGA8914SQEQSAEGGLGALT-5.42271-6.45801
HLA-B44:053DX88914SQEQSAEGGLGALT-7.85648-8.89178
HLA-B44:053DX88914SQEQSAEGGLGALT-5.3978-5.5112
HLA-A02:016TDR8914SQEQSAEGGLGALT-3.37154-4.40684

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Vaccine Design for the FusionNeoAntigens of ENTPD6-ADRM1

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptide sequenceFusionNeoAntigen RNA sequence
ENTPD6-ADRM1chr2025205953chr20608824261019SAEGGLGALGTGCTGAAGGTGGGCTGGGGGCCCTGA
ENTPD6-ADRM1chr2025205953chr20608824261119AEGGLGALCTGAAGGTGGGCTGGGGGCCCTGA
ENTPD6-ADRM1chr2025205953chr20608824261120AEGGLGALTCTGAAGGTGGGCTGGGGGCCCTGACTG
ENTPD6-ADRM1chr2025205953chr2060882426716QEQSAEGGLAGGAGCAAAGTGCTGAAGGTGGGCTGG
ENTPD6-ADRM1chr2025205953chr2060882426718QEQSAEGGLGAAGGAGCAAAGTGCTGAAGGTGGGCTGGGGGCCC

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptideFusionNEoAntigen RNA sequence
ENTPD6-ADRM1chr2025205953chr2060882426015TPGVRLSQEQSAEGGCTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAGGTGGGC
ENTPD6-ADRM1chr2025205953chr20608824261126AEGGLGALTGPGLASCTGAAGGTGGGCTGGGGGCCCTGACTGGACCTGGCCTGGCCAGCT
ENTPD6-ADRM1chr2025205953chr2060882426217GVRLSQEQSAEGGLGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAGGTGGGCTGGGGG

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Information of the samples that have these potential fusion neoantigens of ENTPD6-ADRM1

check button These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.
Cancer typeFusion geneHchrHbpHenstTchrTbpTenstSample
ESCAENTPD6-ADRM1chr2025205953ENST00000433259chr2060882426ENST00000253003TCGA-L5-A88V

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Potential target of CAR-T therapy development for ENTPD6-ADRM1

check button Predicted 3D structure. We used RoseTTAFold.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features


* Minus value of BPloci means that the break point is located before the CDS.
- In-frame and retained 'Transmembrane'.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneENTPD6chr20:25205953chr20:60882426ENST00000354989+131440_60435468.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
HgeneENTPD6chr20:25205953chr20:60882426ENST00000376652+141540_60452485.0TransmembraneHelical%3B Signal-anchor for type II membrane protein

check button Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.
HgeneHchrHbpHenstTgeneTchrTbpTenstDeepLoc result

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Related Drugs to ENTPD6-ADRM1

check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to ENTPD6-ADRM1

check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource