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Center for Computational Systems Medicine
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Fusion Gene and Fusion Protein Summary

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Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)

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Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)

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Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)

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Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)

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Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)

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Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)

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Potential target of CAR-T therapy development

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Information on the samples that have these potential fusion neoantigens

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Fusion Protein Targeting Drugs - (Manual Curation)

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Fusion Protein Related diseases - (Manual Curation)

Fusion Protein:ITPR2-KIAA0922

Fusion Gene and Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: ITPR2-KIAA0922
FusionPDB ID: 40701
FusionGDB2.0 ID: 40701
HgeneTgene
Gene symbol

ITPR2

KIAA0922

Gene ID

3709

23240

Gene nameinositol 1,4,5-trisphosphate receptor type 2transmembrane 131 like
SynonymsANHD|CFAP48|INSP3R2|IP3R2KIAA0922
Cytomap

12p11.23

4q31.3

Type of geneprotein-codingprotein-coding
Descriptioninositol 1,4,5-trisphosphate receptor type 2IP3 receptorIP3R 2cilia and flagella associated protein 48type 2 InsP3 receptortransmembrane protein 131-like
Modification date2020031320200313
UniProtAcc

Q14571

Main function of 5'-partner protein: FUNCTION: Receptor for inositol 1,4,5-trisphosphate, a second messenger that mediates the release of intracellular calcium. This release is regulated by cAMP both dependently and independently of PKA (By similarity). {ECO:0000250|UniProtKB:Q9Z329}.
.
Ensembl transtripts involved in fusion geneENST idsENST00000381340, ENST00000242737, 
ENST00000545902, 
ENST00000409663, 
ENST00000409959, ENST00000440693, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score21 X 18 X 10=37803 X 4 X 3=36
# samples 234
** MAII scorelog2(23/3780*10)=-4.03868046816406
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/36*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Fusion gene context

PubMed: ITPR2 [Title/Abstract] AND KIAA0922 [Title/Abstract] AND fusion [Title/Abstract]

Fusion neoantigen context

PubMed: ITPR2 [Title/Abstract] AND KIAA0922 [Title/Abstract] AND neoantigen [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)ITPR2(26774055)-KIAA0922(154501977), # samples:2
Anticipated loss of major functional domain due to fusion event.ITPR2-KIAA0922 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
ITPR2-KIAA0922 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
ITPR2-KIAA0922 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
ITPR2-KIAA0922 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneITPR2

GO:0001666

response to hypoxia

19120137

TgeneKIAA0922

GO:0090090

negative regulation of canonical Wnt signaling pathway

23690469



check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:26774055/chr4:154501977)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonRetention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

check buttonFusion gene breakpoints across ITPR2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across KIAA0922 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Amino Acid Sequences


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000381340ITPR2chr1226774055-ENST00000440693KIAA0922chr4154501977+7932387941777992460
ENST00000381340ITPR2chr1226774055-ENST00000409663KIAA0922chr4154501977+8184387941780482543
ENST00000381340ITPR2chr1226774055-ENST00000409959KIAA0922chr4154501977+8187387941780512544

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000381340ENST00000440693ITPR2chr1226774055-KIAA0922chr4154501977+0.0014011930.99859875
ENST00000381340ENST00000409663ITPR2chr1226774055-KIAA0922chr4154501977+0.0011682540.9988318
ENST00000381340ENST00000409959ITPR2chr1226774055-KIAA0922chr4154501977+0.0011897660.9988103

check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for ITPR2-KIAA0922

check button +/-13 AA sequence from the breakpoints of the fusion protein sequences.
HgeneHchrHbpTgeneTchrTbpLength(fusion protein)BP in fusion proteinPeptide
ITPR2chr1226774055KIAA0922chr415450197738791154GESQVKGGEEPIEAETTNTSLLQVQL

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Potential FusionNeoAntigen Information of ITPR2-KIAA0922 in HLA I

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
ITPR2-KIAA0922_26774055_154501977.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)
Fusion geneHchrHbpTgeneTchrTbpHLA IFusionNeoAntigen peptideBinding scoreImmunogenic scoreNeoantigen start (at BP 13)Neoantigen end (at BP 13)
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B45:01GEEPIEAET0.9770.9431716
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B50:02GEEPIEAET0.94980.7896716
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B50:02IEAETTNTS0.75840.56831120
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B35:03EAETTNTSL0.46750.89361221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B35:04EAETTNTSL0.36420.89821221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B35:02EAETTNTSL0.36420.89821221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B41:01GEEPIEAET0.22440.9765716
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B41:01IEAETTNTS0.21490.96941120
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B50:01IEAETTNTS0.01160.75341120
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B39:13IEAETTNTSL0.83160.93691121
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B39:13IEAETTNTSLL0.92610.94081122
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C05:09EAETTNTSL0.99980.93971221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C08:15EAETTNTSL0.99970.96321221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C08:04EAETTNTSL0.72270.93371221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C08:13EAETTNTSL0.72270.93371221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C08:03EAETTNTSL0.64320.94371221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B39:10EAETTNTSL0.47580.94481221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B35:12EAETTNTSL0.36420.89821221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C08:15IEAETTNTSL0.99870.97851121
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B39:08IEAETTNTSL0.95970.90461121
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B39:08IEAETTNTSLL0.97930.89451122
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C05:01EAETTNTSL0.99980.93971221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C04:03EAETTNTSL0.99980.851221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C08:02EAETTNTSL0.99970.96321221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C03:06EAETTNTSL0.82130.98671221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C08:01EAETTNTSL0.64320.94371221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B35:13EAETTNTSL0.41380.89981221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B35:09EAETTNTSL0.36420.89821221
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B50:04IEAETTNTS0.01160.75341120
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B50:05IEAETTNTS0.01160.75341120
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-C08:02IEAETTNTSL0.99870.97851121
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B40:04IEAETTNTSL0.99710.70681121
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B39:02IEAETTNTSL0.87450.94391121
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B41:03IEAETTNTSL0.73740.71241121
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B40:04IEAETTNTSLL0.99910.681122
ITPR2-KIAA0922chr1226774055chr41545019773879HLA-B41:03IEAETTNTSLL0.93130.69151122

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Potential FusionNeoAntigen Information of ITPR2-KIAA0922 in HLA II

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
ITPR2-KIAA0922_26774055_154501977.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).
Fusion geneHchrHbpTgeneTchrTbpHLA IIFusionNeoAntigen peptideNeoantigen start (at BP 13)Neoantigen end (at BP 13)
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0401EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0401GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0401GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0401EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0403EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0403GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0403GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0413EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0413GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0413GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0413EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0415EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0419EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0419GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0422EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0422GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0422GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0422EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0427EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0427GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0427GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0431EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0431GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0433EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0433GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0433GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0433EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0434EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0434GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0435EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0435GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0435GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0436EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0437EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0438EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0438GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0438GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0438EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0439EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0439GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0439GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0440EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0440GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0440GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0440EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0441EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0441GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0441GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0442EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0442GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0443EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0444EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0444GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0444GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0444EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0446EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0446GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0446GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0449EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0449GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0449GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0450EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0450GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0450GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0451EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0451GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0451GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0452EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0452GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0452GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0453EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0455EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0455GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0455GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0456EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0456GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0456GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0458EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0459EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0459GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0460EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0460GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0460GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0461EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0461GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0462EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0463EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0463GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0463GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0463EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0464EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0464GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0464GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0467EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0467GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0467GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0468EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0468GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0468GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0468EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0470EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0470GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0470GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0470EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0471EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0471GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0471GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0472EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0472GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0472GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0472EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0473EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0473GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0474EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0474GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0475EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0475GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0475GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0476EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0476GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0476GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0476EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0478EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0478GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0479EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0479GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0479GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0479EPIEAETTNTSLLQV924
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0485EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0485GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0485GGEEPIEAETTNTSL621
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0488EEPIEAETTNTSLLQ823
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-0488GEEPIEAETTNTSLL722
ITPR2-KIAA0922chr1226774055chr41545019773879DRB1-1002EEPIEAETTNTSLLQ823

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Fusion breakpoint peptide structures of ITPR2-KIAA0922

check button3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.
File nameBPseqHgeneTgeneHchrHbpTchrTbpAAlen
2799GGEEPIEAETTNTSITPR2KIAA0922chr1226774055chr41545019773879

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of ITPR2-KIAA0922

check buttonVirtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.
HLA allelePDB IDFile nameBPseqDocking scoreGlide score
HLA-B14:023BVN2799GGEEPIEAETTNTS-7.9962-8.1096
HLA-B14:023BVN2799GGEEPIEAETTNTS-5.70842-6.74372
HLA-B52:013W392799GGEEPIEAETTNTS-6.83737-6.95077
HLA-B52:013W392799GGEEPIEAETTNTS-4.4836-5.5189
HLA-A11:014UQ22799GGEEPIEAETTNTS-10.0067-10.1201
HLA-A11:014UQ22799GGEEPIEAETTNTS-9.03915-10.0745
HLA-A24:025HGA2799GGEEPIEAETTNTS-6.56204-6.67544
HLA-A24:025HGA2799GGEEPIEAETTNTS-5.42271-6.45801
HLA-B44:053DX82799GGEEPIEAETTNTS-7.85648-8.89178
HLA-B44:053DX82799GGEEPIEAETTNTS-5.3978-5.5112
HLA-A02:016TDR2799GGEEPIEAETTNTS-3.37154-4.40684

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Vaccine Design for the FusionNeoAntigens of ITPR2-KIAA0922

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptide sequenceFusionNeoAntigen RNA sequence
ITPR2-KIAA0922chr1226774055chr41545019771120IEAETTNTSATTGAGGCAGAAACCACTAATACTAGC
ITPR2-KIAA0922chr1226774055chr41545019771121IEAETTNTSLATTGAGGCAGAAACCACTAATACTAGCCTC
ITPR2-KIAA0922chr1226774055chr41545019771122IEAETTNTSLLATTGAGGCAGAAACCACTAATACTAGCCTCTTG
ITPR2-KIAA0922chr1226774055chr41545019771221EAETTNTSLGAGGCAGAAACCACTAATACTAGCCTC
ITPR2-KIAA0922chr1226774055chr4154501977716GEEPIEAETGGTGAAGAGCCAATTGAGGCAGAAACC

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptideFusionNEoAntigen RNA sequence
ITPR2-KIAA0922chr1226774055chr4154501977621GGEEPIEAETTNTSLGGTGGTGAAGAGCCAATTGAGGCAGAAACCACTAATACTAGCCTC
ITPR2-KIAA0922chr1226774055chr4154501977722GEEPIEAETTNTSLLGGTGAAGAGCCAATTGAGGCAGAAACCACTAATACTAGCCTCTTG
ITPR2-KIAA0922chr1226774055chr4154501977823EEPIEAETTNTSLLQGAAGAGCCAATTGAGGCAGAAACCACTAATACTAGCCTCTTGCAG
ITPR2-KIAA0922chr1226774055chr4154501977924EPIEAETTNTSLLQVGAGCCAATTGAGGCAGAAACCACTAATACTAGCCTCTTGCAGGTG

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Information of the samples that have these potential fusion neoantigens of ITPR2-KIAA0922

check button These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.
Cancer typeFusion geneHchrHbpHenstTchrTbpTenstSample
ESCAITPR2-KIAA0922chr1226774055ENST00000381340chr4154501977ENST00000409663TCGA-L5-A4ON

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Potential target of CAR-T therapy development for ITPR2-KIAA0922

check button Predicted 3D structure. We used RoseTTAFold.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features


* Minus value of BPloci means that the break point is located before the CDS.
- In-frame and retained 'Transmembrane'.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneKIAA0922chr12:26774055chr4:154501977ENST00000409663635870_89001610.0TransmembraneHelical
TgeneKIAA0922chr12:26774055chr4:154501977ENST00000409959635870_89001611.0TransmembraneHelical
TgeneKIAA0922chr12:26774055chr4:154501977ENST00000440693633870_89001527.0TransmembraneHelical

check button Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.
HgeneHchrHbpHenstTgeneTchrTbpTenstDeepLoc result

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Related Drugs to ITPR2-KIAA0922

check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to ITPR2-KIAA0922

check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneITPR2C0003132Anoxic Encephalopathy1CTD_human
HgeneITPR2C0018800Cardiomegaly1CTD_human
HgeneITPR2C0995195Anoxia of brain1CTD_human
HgeneITPR2C1140716Hypoxic Brain Damage1CTD_human
HgeneITPR2C1383860Cardiac Hypertrophy1CTD_human
HgeneITPR2C1527348Brain Hypoxia1CTD_human
HgeneITPR2C1862871ANHIDROSIS, ISOLATED, WITH NORMAL SWEAT GLANDS1CTD_human;ORPHANET;UNIPROT