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Fusion Protein:KCNQ5-RNF217 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: KCNQ5-RNF217 | FusionPDB ID: 41579 | FusionGDB2.0 ID: 41579 | Hgene | Tgene | Gene symbol | KCNQ5 | RNF217 | Gene ID | 56479 | 154214 |
Gene name | potassium voltage-gated channel subfamily Q member 5 | ring finger protein 217 | |
Synonyms | Kv7.5|MRD46 | C6orf172|IBRDC1|OSTL|dJ84N20.1 | |
Cytomap | 6q13 | 6q22.31 | |
Type of gene | protein-coding | protein-coding | |
Description | potassium voltage-gated channel subfamily KQT member 5KQT-like 5potassium channel proteinpotassium channel subunit alpha KvLQT5potassium channel, voltage gated KQT-like subfamily Q, member 5voltage-gated potassium channel subunit Kv7.5 | probable E3 ubiquitin-protein ligase RNF217IBR domain containing 1opposite STL | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q9NR82 Main function of 5'-partner protein: FUNCTION: Associates with KCNQ3 to form a potassium channel which contributes to M-type current, a slowly activating and deactivating potassium conductance which plays a critical role in determining the subthreshold electrical excitability of neurons. Therefore, it is important in the regulation of neuronal excitability. May contribute, with other potassium channels, to the molecular diversity of a heterogeneous population of M-channels, varying in kinetic and pharmacological properties, which underlie this physiologically important current. Insensitive to tetraethylammonium, but inhibited by barium, linopirdine and XE991. Activated by niflumic acid and the anticonvulsant retigabine. As the native M-channel, the potassium channel composed of KCNQ3 and KCNQ5 is also suppressed by activation of the muscarinic acetylcholine receptor CHRM1. {ECO:0000269|PubMed:10787416, ECO:0000269|PubMed:11159685, ECO:0000269|PubMed:28669405}. | . | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000342056, ENST00000355194, ENST00000355635, ENST00000370392, ENST00000370398, ENST00000402622, ENST00000403813, ENST00000414165, | ENST00000275184, ENST00000359704, ENST00000368414, ENST00000454842, ENST00000521654, ENST00000560949, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 8 X 7 X 4=224 | 5 X 6 X 6=180 |
# samples | 8 | 11 | |
** MAII score | log2(8/224*10)=-1.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(11/180*10)=-0.710493382805015 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: KCNQ5 [Title/Abstract] AND RNF217 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: KCNQ5 [Title/Abstract] AND RNF217 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | KCNQ5(73713721)-RNF217(125397803), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | KCNQ5-RNF217 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. KCNQ5-RNF217 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. KCNQ5-RNF217 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. KCNQ5-RNF217 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | KCNQ5 | GO:0071805 | potassium ion transmembrane transport | 10787416|11159685 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr6:73713721/chr6:125397803) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000342056 | KCNQ5 | chr6 | 73713721 | + | ENST00000521654 | RNF217 | chr6 | 125397803 | + | 10931 | 887 | 398 | 1234 | 278 |
ENST00000342056 | KCNQ5 | chr6 | 73713721 | + | ENST00000560949 | RNF217 | chr6 | 125397803 | + | 2016 | 887 | 398 | 1234 | 278 |
ENST00000355194 | KCNQ5 | chr6 | 73713721 | + | ENST00000521654 | RNF217 | chr6 | 125397803 | + | 10880 | 836 | 347 | 1183 | 278 |
ENST00000355194 | KCNQ5 | chr6 | 73713721 | + | ENST00000560949 | RNF217 | chr6 | 125397803 | + | 1965 | 836 | 347 | 1183 | 278 |
ENST00000370398 | KCNQ5 | chr6 | 73713721 | + | ENST00000521654 | RNF217 | chr6 | 125397803 | + | 10642 | 598 | 109 | 945 | 278 |
ENST00000370398 | KCNQ5 | chr6 | 73713721 | + | ENST00000560949 | RNF217 | chr6 | 125397803 | + | 1727 | 598 | 109 | 945 | 278 |
ENST00000370392 | KCNQ5 | chr6 | 73713721 | + | ENST00000521654 | RNF217 | chr6 | 125397803 | + | 10617 | 573 | 84 | 920 | 278 |
ENST00000370392 | KCNQ5 | chr6 | 73713721 | + | ENST00000560949 | RNF217 | chr6 | 125397803 | + | 1702 | 573 | 84 | 920 | 278 |
ENST00000355635 | KCNQ5 | chr6 | 73713721 | + | ENST00000521654 | RNF217 | chr6 | 125397803 | + | 10533 | 489 | 0 | 836 | 278 |
ENST00000355635 | KCNQ5 | chr6 | 73713721 | + | ENST00000560949 | RNF217 | chr6 | 125397803 | + | 1618 | 489 | 0 | 836 | 278 |
ENST00000414165 | KCNQ5 | chr6 | 73713721 | + | ENST00000521654 | RNF217 | chr6 | 125397803 | + | 10533 | 489 | 0 | 836 | 278 |
ENST00000414165 | KCNQ5 | chr6 | 73713721 | + | ENST00000560949 | RNF217 | chr6 | 125397803 | + | 1618 | 489 | 0 | 836 | 278 |
ENST00000402622 | KCNQ5 | chr6 | 73713721 | + | ENST00000521654 | RNF217 | chr6 | 125397803 | + | 10533 | 489 | 0 | 836 | 278 |
ENST00000402622 | KCNQ5 | chr6 | 73713721 | + | ENST00000560949 | RNF217 | chr6 | 125397803 | + | 1618 | 489 | 0 | 836 | 278 |
ENST00000403813 | KCNQ5 | chr6 | 73713721 | + | ENST00000521654 | RNF217 | chr6 | 125397803 | + | 10533 | 489 | 0 | 836 | 278 |
ENST00000403813 | KCNQ5 | chr6 | 73713721 | + | ENST00000560949 | RNF217 | chr6 | 125397803 | + | 1618 | 489 | 0 | 836 | 278 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000342056 | ENST00000521654 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.014802436 | 0.9851976 |
ENST00000342056 | ENST00000560949 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.10324986 | 0.89675015 |
ENST00000355194 | ENST00000521654 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.016214203 | 0.9837858 |
ENST00000355194 | ENST00000560949 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.11633354 | 0.8836665 |
ENST00000370398 | ENST00000521654 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.013737293 | 0.9862627 |
ENST00000370398 | ENST00000560949 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.07072096 | 0.92927897 |
ENST00000370392 | ENST00000521654 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.01379037 | 0.9862096 |
ENST00000370392 | ENST00000560949 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.065225974 | 0.93477404 |
ENST00000355635 | ENST00000521654 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.013766092 | 0.98623395 |
ENST00000355635 | ENST00000560949 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.052646548 | 0.9473534 |
ENST00000414165 | ENST00000521654 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.013766092 | 0.98623395 |
ENST00000414165 | ENST00000560949 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.052646548 | 0.9473534 |
ENST00000402622 | ENST00000521654 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.013766092 | 0.98623395 |
ENST00000402622 | ENST00000560949 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.052646548 | 0.9473534 |
ENST00000403813 | ENST00000521654 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.013766092 | 0.98623395 |
ENST00000403813 | ENST00000560949 | KCNQ5 | chr6 | 73713721 | + | RNF217 | chr6 | 125397803 | + | 0.052646548 | 0.9473534 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for KCNQ5-RNF217 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
KCNQ5 | chr6 | 73713721 | RNF217 | chr6 | 125397803 | 489 | 159 | STIPEHTKLASSCLLILIHIQRTEGC |
KCNQ5 | chr6 | 73713721 | RNF217 | chr6 | 125397803 | 573 | 159 | STIPEHTKLASSCLLILIHIQRTEGC |
KCNQ5 | chr6 | 73713721 | RNF217 | chr6 | 125397803 | 598 | 159 | STIPEHTKLASSCLLILIHIQRTEGC |
KCNQ5 | chr6 | 73713721 | RNF217 | chr6 | 125397803 | 836 | 159 | STIPEHTKLASSCLLILIHIQRTEGC |
KCNQ5 | chr6 | 73713721 | RNF217 | chr6 | 125397803 | 887 | 159 | STIPEHTKLASSCLLILIHIQRTEGC |
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Potential FusionNeoAntigen Information of KCNQ5-RNF217 in HLA I |
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KCNQ5-RNF217_73713721_125397803.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B13:02 | KLASSCLLI | 0.0508 | 0.7676 | 7 | 16 |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B39:01 | EHTKLASSCL | 0.9938 | 0.8328 | 4 | 14 |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B38:02 | EHTKLASSCL | 0.9809 | 0.8568 | 4 | 14 |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B38:01 | EHTKLASSCL | 0.9746 | 0.8341 | 4 | 14 |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B38:01 | EHTKLASSCLL | 0.9944 | 0.8642 | 4 | 15 |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B38:02 | EHTKLASSCLL | 0.994 | 0.8821 | 4 | 15 |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B39:05 | EHTKLASSCL | 0.9762 | 0.7898 | 4 | 14 |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B38:05 | EHTKLASSCL | 0.9746 | 0.8341 | 4 | 14 |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B39:11 | EHTKLASSCL | 0.8471 | 0.7114 | 4 | 14 |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 | HLA-B38:05 | EHTKLASSCLL | 0.9944 | 0.8642 | 4 | 15 |
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Potential FusionNeoAntigen Information of KCNQ5-RNF217 in HLA II |
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![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
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Fusion breakpoint peptide structures of KCNQ5-RNF217 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
9439 | TKLASSCLLILIHI | KCNQ5 | RNF217 | chr6 | 73713721 | chr6 | 125397803 | 887 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of KCNQ5-RNF217 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 9439 | TKLASSCLLILIHI | -7.15543 | -7.26883 |
HLA-B14:02 | 3BVN | 9439 | TKLASSCLLILIHI | -4.77435 | -5.80965 |
HLA-B52:01 | 3W39 | 9439 | TKLASSCLLILIHI | -6.80875 | -6.92215 |
HLA-B52:01 | 3W39 | 9439 | TKLASSCLLILIHI | -4.20386 | -5.23916 |
HLA-A11:01 | 4UQ2 | 9439 | TKLASSCLLILIHI | -7.5194 | -8.5547 |
HLA-A11:01 | 4UQ2 | 9439 | TKLASSCLLILIHI | -6.9601 | -7.0735 |
HLA-A24:02 | 5HGA | 9439 | TKLASSCLLILIHI | -7.52403 | -7.63743 |
HLA-A24:02 | 5HGA | 9439 | TKLASSCLLILIHI | -5.82433 | -6.85963 |
HLA-B27:05 | 6PYJ | 9439 | TKLASSCLLILIHI | -3.28285 | -4.31815 |
HLA-B44:05 | 3DX8 | 9439 | TKLASSCLLILIHI | -5.91172 | -6.94702 |
HLA-B44:05 | 3DX8 | 9439 | TKLASSCLLILIHI | -4.24346 | -4.35686 |
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Vaccine Design for the FusionNeoAntigens of KCNQ5-RNF217 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 4 | 14 | EHTKLASSCL | TTGGCCTCAAGTTGCCTCTTGATCCTGATC |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 4 | 15 | EHTKLASSCLL | TTGGCCTCAAGTTGCCTCTTGATCCTGATCCAC |
KCNQ5-RNF217 | chr6 | 73713721 | chr6 | 125397803 | 7 | 16 | KLASSCLLI | AGTTGCCTCTTGATCCTGATCCACATC |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
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Information of the samples that have these potential fusion neoantigens of KCNQ5-RNF217 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
SKCM | KCNQ5-RNF217 | chr6 | 73713721 | ENST00000342056 | chr6 | 125397803 | ENST00000521654 | TCGA-FS-A1Z0-06A |
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Potential target of CAR-T therapy development for KCNQ5-RNF217 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | KCNQ5 | chr6:73713721 | chr6:125397803 | ENST00000370392 | + | 2 | 9 | 126_146 | 163 | 428.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Hgene | KCNQ5 | chr6:73713721 | chr6:125397803 | ENST00000370398 | + | 2 | 14 | 126_146 | 163 | 933.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Hgene | KCNQ5 | chr6:73713721 | chr6:125397803 | ENST00000402622 | + | 2 | 14 | 126_146 | 163 | 943.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Hgene | KCNQ5 | chr6:73713721 | chr6:125397803 | ENST00000403813 | + | 2 | 13 | 126_146 | 163 | 924.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Hgene | KCNQ5 | chr6:73713721 | chr6:125397803 | ENST00000414165 | + | 2 | 12 | 126_146 | 163 | 823.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Tgene | RNF217 | chr6:73713721 | chr6:125397803 | ENST00000359704 | 4 | 9 | 503_523 | 0 | 276.0 | Transmembrane | Helical |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to KCNQ5-RNF217 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to KCNQ5-RNF217 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |