Fusion partner gene information | Fusion gene name: KRR1-KCNC2 |
FusionPDB ID: 43466 | FusionGDB2.0 ID: 43466 | | Hgene | Tgene | Gene symbol | KRR1 | KCNC2 | Gene ID | 11103 | 3747 | Gene name | KRR1 small subunit processome component homolog | potassium voltage-gated channel subfamily C member 2 |
Synonyms | HRB2|RIP-1 | KV3.2 |
Cytomap | 12q21.2 | 12q21.1 |
Type of gene | protein-coding | protein-coding |
Description | KRR1 small subunit processome component homologHIV-1 Rev-binding protein 2HIV-1 rev binding protein 2KRR-R motif-containing protein 1KRR1, small subunit (SSU) processome component, homologRev interacting proteinrev-interacting protein 1 | potassium voltage-gated channel subfamily C member 2potassium channel, voltage gated Shaw related subfamily C, member 2potassium voltage-gated channel, Shaw-related subfamily, member 2shaw-like potassium channelvoltage-gated potassium channel Kv3.2 |
Modification date | 20200327 | 20200313 |
UniProtAcc | Q13601 Main function of 5'-partner protein: FUNCTION: Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (By similarity). {ECO:0000250}. | . |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000229214, ENST00000438169,
| ENST00000548243, ENST00000298972, ENST00000341669, ENST00000350228, ENST00000393288, ENST00000540018, ENST00000548513, ENST00000549446, ENST00000550433, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 4 X 4 X 2=32 | 15 X 5 X 6=450 |
# samples | 4 | 16 |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(16/450*10)=-1.49185309632967 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 |
Fusion gene context | PubMed: KRR1 [Title/Abstract] AND KCNC2 [Title/Abstract] AND fusion [Title/Abstract] |
Fusion neoantigen context | PubMed: KRR1 [Title/Abstract] AND KCNC2 [Title/Abstract] AND neoantigen [Title/Abstract] |
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | KRR1(75900562)-KCNC2(75445097), # samples:1
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Anticipated loss of major functional domain due to fusion event. | KRR1-KCNC2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. KRR1-KCNC2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. KRR1-KCNC2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. KRR1-KCNC2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000298972 | | 1 | 6 | 230_250 | 0 | 599.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000298972 | | 1 | 6 | 284_303 | 0 | 599.0 | Transmembrane | Helical%3B Name%3DSegment S2 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000298972 | | 1 | 6 | 314_334 | 0 | 599.0 | Transmembrane | Helical%3B Name%3DSegment S3 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000298972 | | 1 | 6 | 346_368 | 0 | 599.0 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000298972 | | 1 | 6 | 382_402 | 0 | 599.0 | Transmembrane | Helical%3B Name%3DSegment S5 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000298972 | | 1 | 6 | 453_473 | 0 | 599.0 | Transmembrane | Helical%3B Name%3DSegment S6 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000341669 | | 1 | 5 | 230_250 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000341669 | | 1 | 5 | 284_303 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S2 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000341669 | | 1 | 5 | 314_334 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S3 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000341669 | | 1 | 5 | 346_368 | 0 | 630.0 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000341669 | | 1 | 5 | 382_402 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S5 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000341669 | | 1 | 5 | 453_473 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S6 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000350228 | | 1 | 5 | 230_250 | 0 | 543.6666666666666 | Transmembrane | Helical%3B Name%3DSegment S1 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000350228 | | 1 | 5 | 284_303 | 0 | 543.6666666666666 | Transmembrane | Helical%3B Name%3DSegment S2 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000350228 | | 1 | 5 | 314_334 | 0 | 543.6666666666666 | Transmembrane | Helical%3B Name%3DSegment S3 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000350228 | | 1 | 5 | 346_368 | 0 | 543.6666666666666 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000350228 | | 1 | 5 | 382_402 | 0 | 543.6666666666666 | Transmembrane | Helical%3B Name%3DSegment S5 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000350228 | | 1 | 5 | 453_473 | 0 | 543.6666666666666 | Transmembrane | Helical%3B Name%3DSegment S6 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000393288 | | 1 | 5 | 230_250 | 0 | 619.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000393288 | | 1 | 5 | 284_303 | 0 | 619.0 | Transmembrane | Helical%3B Name%3DSegment S2 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000393288 | | 1 | 5 | 314_334 | 0 | 619.0 | Transmembrane | Helical%3B Name%3DSegment S3 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000393288 | | 1 | 5 | 346_368 | 0 | 619.0 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000393288 | | 1 | 5 | 382_402 | 0 | 619.0 | Transmembrane | Helical%3B Name%3DSegment S5 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000393288 | | 1 | 5 | 453_473 | 0 | 619.0 | Transmembrane | Helical%3B Name%3DSegment S6 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000540018 | | 1 | 4 | 230_250 | 0 | 584.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000540018 | | 1 | 4 | 284_303 | 0 | 584.0 | Transmembrane | Helical%3B Name%3DSegment S2 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000540018 | | 1 | 4 | 314_334 | 0 | 584.0 | Transmembrane | Helical%3B Name%3DSegment S3 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000540018 | | 1 | 4 | 346_368 | 0 | 584.0 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000540018 | | 1 | 4 | 382_402 | 0 | 584.0 | Transmembrane | Helical%3B Name%3DSegment S5 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000540018 | | 1 | 4 | 453_473 | 0 | 584.0 | Transmembrane | Helical%3B Name%3DSegment S6 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000548513 | | 0 | 5 | 230_250 | 0 | 477.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000548513 | | 0 | 5 | 284_303 | 0 | 477.0 | Transmembrane | Helical%3B Name%3DSegment S2 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000548513 | | 0 | 5 | 314_334 | 0 | 477.0 | Transmembrane | Helical%3B Name%3DSegment S3 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000548513 | | 0 | 5 | 346_368 | 0 | 477.0 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000548513 | | 0 | 5 | 382_402 | 0 | 477.0 | Transmembrane | Helical%3B Name%3DSegment S5 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000548513 | | 0 | 5 | 453_473 | 0 | 477.0 | Transmembrane | Helical%3B Name%3DSegment S6 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000549446 | | 1 | 5 | 230_250 | 0 | 639.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000549446 | | 1 | 5 | 284_303 | 0 | 639.0 | Transmembrane | Helical%3B Name%3DSegment S2 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000549446 | | 1 | 5 | 314_334 | 0 | 639.0 | Transmembrane | Helical%3B Name%3DSegment S3 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000549446 | | 1 | 5 | 346_368 | 0 | 639.0 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000549446 | | 1 | 5 | 382_402 | 0 | 639.0 | Transmembrane | Helical%3B Name%3DSegment S5 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000549446 | | 1 | 5 | 453_473 | 0 | 639.0 | Transmembrane | Helical%3B Name%3DSegment S6 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000550433 | | 0 | 4 | 230_250 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S1 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000550433 | | 0 | 4 | 284_303 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S2 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000550433 | | 0 | 4 | 314_334 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S3 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000550433 | | 0 | 4 | 346_368 | 0 | 630.0 | Transmembrane | Helical%3B Voltage-sensor%3B Name%3DSegment S4 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000550433 | | 0 | 4 | 382_402 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S5 |
Tgene | KCNC2 | chr12:75900562 | chr12:75445097 | ENST00000550433 | | 0 | 4 | 453_473 | 0 | 630.0 | Transmembrane | Helical%3B Name%3DSegment S6 |