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Center for Computational Systems Medicine
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Fusion Gene and Fusion Protein Summary

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Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)

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Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)

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Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)

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Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)

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Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)

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Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)

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Potential target of CAR-T therapy development

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Information on the samples that have these potential fusion neoantigens

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Fusion Protein Targeting Drugs - (Manual Curation)

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Fusion Protein Related diseases - (Manual Curation)

Fusion Protein:OGDH-ZNF138

Fusion Gene and Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: OGDH-ZNF138
FusionPDB ID: 61405
FusionGDB2.0 ID: 61405
HgeneTgene
Gene symbol

OGDH

ZNF138

Gene ID

4967

7697

Gene nameoxoglutarate dehydrogenasezinc finger protein 138
SynonymsAKGDH|E1k|OGDCpHZ-32
Cytomap

7p13

7q11.21

Type of geneprotein-codingprotein-coding
Description2-oxoglutarate dehydrogenase, mitochondrial2-oxoglutarate dehydrogenase complex component E1OGDC-E1oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)oxoglutarate decarboxylaseoxoglutarate dehydrogenase (succinyl-transferring)testicular tiszinc finger protein 138zinc finger protein 138 (clone pHZ-32)
Modification date2020031320200320
UniProtAcc..
Ensembl transtripts involved in fusion geneENST idsENST00000222673, ENST00000439616, 
ENST00000443864, ENST00000444676, 
ENST00000447398, ENST00000449767, 
ENST00000543843, ENST00000459672, 
ENST00000397136, ENST00000430838, 
ENST00000437743, ENST00000440598, 
ENST00000440155, ENST00000494380, 
ENST00000307355, ENST00000359735, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score7 X 5 X 3=1055 X 3 X 4=60
# samples 75
** MAII scorelog2(7/105*10)=-0.584962500721156
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/60*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Fusion gene context

PubMed: OGDH [Title/Abstract] AND ZNF138 [Title/Abstract] AND fusion [Title/Abstract]

Fusion neoantigen context

PubMed: OGDH [Title/Abstract] AND ZNF138 [Title/Abstract] AND neoantigen [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)OGDH(44664164)-ZNF138(64291829), # samples:1
Anticipated loss of major functional domain due to fusion event.OGDH-ZNF138 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
OGDH-ZNF138 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
OGDH-ZNF138 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
OGDH-ZNF138 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
OGDH-ZNF138 seems lost the major protein functional domain in Tgene partner, which is a transcription factor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneOGDH

GO:0006103

2-oxoglutarate metabolic process

24495017|29211711

HgeneOGDH

GO:0006104

succinyl-CoA metabolic process

24495017|29211711

HgeneOGDH

GO:0106077

histone succinylation

29211711



check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr7:44664164/chr7:64291829)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonRetention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

check buttonFusion gene breakpoints across OGDH (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across ZNF138 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Amino Acid Sequences


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000439616OGDHchr744664164+ENST00000307355ZNF138chr764291829+10833313331082249
ENST00000439616OGDHchr744664164+ENST00000359735ZNF138chr764291829+25293313331082249
ENST00000443864OGDHchr744664164+ENST00000307355ZNF138chr764291829+10673153171066250
ENST00000443864OGDHchr744664164+ENST00000359735ZNF138chr764291829+25133153171066249
ENST00000447398OGDHchr744664164+ENST00000307355ZNF138chr764291829+10643123141063250
ENST00000447398OGDHchr744664164+ENST00000359735ZNF138chr764291829+25103123141063249
ENST00000449767OGDHchr744664164+ENST00000307355ZNF138chr764291829+10643123141063250
ENST00000449767OGDHchr744664164+ENST00000359735ZNF138chr764291829+25103123141063249
ENST00000444676OGDHchr744664164+ENST00000307355ZNF138chr764291829+10272752771026250
ENST00000444676OGDHchr744664164+ENST00000359735ZNF138chr764291829+24732752771026249
ENST00000222673OGDHchr744664164+ENST00000307355ZNF138chr764291829+10162642661015250
ENST00000222673OGDHchr744664164+ENST00000359735ZNF138chr764291829+24622642661015249
ENST00000543843OGDHchr744664164+ENST00000307355ZNF138chr764291829+856104106855250
ENST00000543843OGDHchr744664164+ENST00000359735ZNF138chr764291829+2302104106855249

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000439616ENST00000307355OGDHchr744664164+ZNF138chr764291829+0.116970020.88302994
ENST00000439616ENST00000359735OGDHchr744664164+ZNF138chr764291829+0.352320670.6476793
ENST00000443864ENST00000307355OGDHchr744664164+ZNF138chr764291829+0.183711860.8162882
ENST00000443864ENST00000359735OGDHchr744664164+ZNF138chr764291829+0.519309640.48069033
ENST00000447398ENST00000307355OGDHchr744664164+ZNF138chr764291829+0.153975190.8460249
ENST00000447398ENST00000359735OGDHchr744664164+ZNF138chr764291829+0.4104990.589501
ENST00000449767ENST00000307355OGDHchr744664164+ZNF138chr764291829+0.153975190.8460249
ENST00000449767ENST00000359735OGDHchr744664164+ZNF138chr764291829+0.4104990.589501
ENST00000444676ENST00000307355OGDHchr744664164+ZNF138chr764291829+0.177090050.82290995
ENST00000444676ENST00000359735OGDHchr744664164+ZNF138chr764291829+0.543267550.45673248
ENST00000222673ENST00000307355OGDHchr744664164+ZNF138chr764291829+0.18223380.8177662
ENST00000222673ENST00000359735OGDHchr744664164+ZNF138chr764291829+0.59387970.40612027
ENST00000543843ENST00000307355OGDHchr744664164+ZNF138chr764291829+0.440594520.5594055
ENST00000543843ENST00000359735OGDHchr744664164+ZNF138chr764291829+0.69201790.30798206

check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for OGDH-ZNF138

check button +/-13 AA sequence from the breakpoints of the fusion protein sequences.
HgeneHchrHbpTgeneTchrTbpLength(fusion protein)BP in fusion proteinPeptide
OGDHchr744664164ZNF138chr76429182910480IFQCNKYVKVMHKFSNSNRHKIRHTE
OGDHchr744664164ZNF138chr76429182926480IFQCNKYVKVMHKFSNSNRHKIRHTE
OGDHchr744664164ZNF138chr76429182927580IFQCNKYVKVMHKFSNSNRHKIRHTE
OGDHchr744664164ZNF138chr76429182931280IFQCNKYVKVMHKFSNSNRHKIRHTE
OGDHchr744664164ZNF138chr76429182931580IFQCNKYVKVMHKFSNSNRHKIRHTE
OGDHchr744664164ZNF138chr76429182933180IFQCNKYVKVMHKFSNSNRHKIRHTE

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Potential FusionNeoAntigen Information of OGDH-ZNF138 in HLA I

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
OGDH-ZNF138_44664164_64291829.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)
Fusion geneHchrHbpTgeneTchrTbpHLA IFusionNeoAntigen peptideBinding scoreImmunogenic scoreNeoantigen start (at BP 13)Neoantigen end (at BP 13)
OGDH-ZNF138chr744664164chr764291829264HLA-A32:13KYVKVMHKF0.95080.8749514
OGDH-ZNF138chr744664164chr764291829264HLA-A30:08KVMHKFSNS0.94390.554817
OGDH-ZNF138chr744664164chr764291829264HLA-B58:02KYVKVMHKF0.06480.8076514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:19KYVKVMHKF0.50560.5733514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:67KYVKVMHKF0.35230.8784514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:80KYVKVMHKF0.35230.8784514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:29KYVKVMHKF0.34470.9055514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:95KYVKVMHKF0.30910.553514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:10KYVKVMHKF0.30640.8949514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:46KYVKVMHKF0.27240.7786514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:27KYVKVMHKF0.27230.8959514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:05KYVKVMHKF0.24620.8698514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:13KYVKVMHKF0.21410.8735514
OGDH-ZNF138chr744664164chr764291829264HLA-C12:16KYVKVMHKF0.00770.9176514
OGDH-ZNF138chr744664164chr764291829264HLA-C02:02YVKVMHKF0.9410.9512614
OGDH-ZNF138chr744664164chr764291829264HLA-C02:10YVKVMHKF0.9410.9512614
OGDH-ZNF138chr744664164chr764291829264HLA-A30:01KFSNSNRHK0.96970.71871221
OGDH-ZNF138chr744664164chr764291829264HLA-A32:01KYVKVMHKF0.80810.8914514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:01KYVKVMHKF0.38430.5485514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:22KYVKVMHKF0.3630.5922514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:02KYVKVMHKF0.35230.8784514
OGDH-ZNF138chr744664164chr764291829264HLA-C07:17KYVKVMHKF0.33990.9168514
OGDH-ZNF138chr744664164chr764291829264HLA-B58:06KYVKVMHKF0.07680.5953514
OGDH-ZNF138chr744664164chr764291829264HLA-C03:67KYVKVMHKF0.0140.9668514
OGDH-ZNF138chr744664164chr764291829264HLA-C06:17KYVKVMHKF0.01120.9863514
OGDH-ZNF138chr744664164chr764291829264HLA-C06:02KYVKVMHKF0.01120.9863514
OGDH-ZNF138chr744664164chr764291829264HLA-C14:02KYVKVMHKF0.01120.8695514
OGDH-ZNF138chr744664164chr764291829264HLA-C14:03KYVKVMHKF0.01120.8695514
OGDH-ZNF138chr744664164chr764291829264HLA-C06:06KYVKVMHKF0.00530.9642514
OGDH-ZNF138chr744664164chr764291829264HLA-C04:04KYVKVMHKF0.00130.8139514

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Potential FusionNeoAntigen Information of OGDH-ZNF138 in HLA II

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
OGDH-ZNF138_44664164_64291829.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).
Fusion geneHchrHbpTgeneTchrTbpHLA IIFusionNeoAntigen peptideNeoantigen start (at BP 13)Neoantigen end (at BP 13)
OGDH-ZNF138chr744664164chr764291829264DRB1-0804NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-0820NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-0820CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-0828NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-0828CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-0831NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-0831CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1103NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1104NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1104CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1105NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1106NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1106CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1111MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1111VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1114MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1114VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1118NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1118CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1120MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1120VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1125NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1125CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1132NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1134NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1135NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1135CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1138NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1138CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1141NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1142NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1142CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1143NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1143CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1144NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1144CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1146NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1146CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1147NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1147CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1148NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1150NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1150CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1153MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1154NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1154CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1156NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1156CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1157NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1157CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1158NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1158CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1160NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1160CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1163NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1167NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1167CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1168MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1168VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1172NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1176NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1177NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1177CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1178NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1178CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1183NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1184NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1184CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1185NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1186MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1188NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1188CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1192NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1192CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1204NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1204CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1209NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1209CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1302MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1302VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1306NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1306CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1308NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1309NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1311NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1311CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1316MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1318NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1318CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1319NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1323MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1323VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1324NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1326NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1326CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1329MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1329VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1331MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1331VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1331KVMHKFSNSNRHKIR823
OGDH-ZNF138chr744664164chr764291829264DRB1-1331HKFSNSNRHKIRHTE1126
OGDH-ZNF138chr744664164chr764291829264DRB1-1334MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1334VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1336MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1336VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1338MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1338VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1339MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1339VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1341MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1341VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1342NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1342CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1344NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1353NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1363MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1363VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1365MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1365VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1370NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1372NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1373MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1373VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1374MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1374VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1384NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1396MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1396VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1397MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1397VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1399MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1399VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1406NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1406CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1407MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1407VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1407KVMHKFSNSNRHKIR823
OGDH-ZNF138chr744664164chr764291829264DRB1-1407HKFSNSNRHKIRHTE1126
OGDH-ZNF138chr744664164chr764291829264DRB1-1412NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1412CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1414MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1414VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1414KVMHKFSNSNRHKIR823
OGDH-ZNF138chr744664164chr764291829264DRB1-1415NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1417NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1420NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1420CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1427NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1429NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1429CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1436MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1436VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1436KVMHKFSNSNRHKIR823
OGDH-ZNF138chr744664164chr764291829264DRB1-1437NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1442MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1442VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1442KVMHKFSNSNRHKIR823
OGDH-ZNF138chr744664164chr764291829264DRB1-1442HKFSNSNRHKIRHTE1126
OGDH-ZNF138chr744664164chr764291829264DRB1-1444MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1444VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1444KVMHKFSNSNRHKIR823
OGDH-ZNF138chr744664164chr764291829264DRB1-1452NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1468MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1468VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB1-1478NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1478CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1480NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1481NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1483NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1483CNKYVKVMHKFSNSN318
OGDH-ZNF138chr744664164chr764291829264DRB1-1484NKYVKVMHKFSNSNR419
OGDH-ZNF138chr744664164chr764291829264DRB1-1493MHKFSNSNRHKIRHT1025
OGDH-ZNF138chr744664164chr764291829264DRB1-1493VMHKFSNSNRHKIRH924
OGDH-ZNF138chr744664164chr764291829264DRB5-0106VKVMHKFSNSNRHKI722
OGDH-ZNF138chr744664164chr764291829264DRB5-0106YVKVMHKFSNSNRHK621
OGDH-ZNF138chr744664164chr764291829264DRB5-0202VKVMHKFSNSNRHKI722
OGDH-ZNF138chr744664164chr764291829264DRB5-0202YVKVMHKFSNSNRHK621
OGDH-ZNF138chr744664164chr764291829264DRB5-0204VKVMHKFSNSNRHKI722
OGDH-ZNF138chr744664164chr764291829264DRB5-0204YVKVMHKFSNSNRHK621

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Fusion breakpoint peptide structures of OGDH-ZNF138

check button3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.
File nameBPseqHgeneTgeneHchrHbpTchrTbpAAlen
10845YVKVMHKFSNSNRHOGDHZNF138chr744664164chr764291829264

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of OGDH-ZNF138

check buttonVirtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.
HLA allelePDB IDFile nameBPseqDocking scoreGlide score
HLA-B14:023BVN10845YVKVMHKFSNSNRH-7.9962-8.1096
HLA-B14:023BVN10845YVKVMHKFSNSNRH-5.70842-6.74372
HLA-B52:013W3910845YVKVMHKFSNSNRH-6.83737-6.95077
HLA-B52:013W3910845YVKVMHKFSNSNRH-4.4836-5.5189
HLA-A11:014UQ210845YVKVMHKFSNSNRH-10.0067-10.1201
HLA-A11:014UQ210845YVKVMHKFSNSNRH-9.03915-10.0745
HLA-A24:025HGA10845YVKVMHKFSNSNRH-6.56204-6.67544
HLA-A24:025HGA10845YVKVMHKFSNSNRH-5.42271-6.45801
HLA-B44:053DX810845YVKVMHKFSNSNRH-7.85648-8.89178
HLA-B44:053DX810845YVKVMHKFSNSNRH-5.3978-5.5112
HLA-A02:016TDR10845YVKVMHKFSNSNRH-3.37154-4.40684

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Vaccine Design for the FusionNeoAntigens of OGDH-ZNF138

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptide sequenceFusionNeoAntigen RNA sequence
OGDH-ZNF138chr744664164chr7642918291221KFSNSNRHKAAGCTCTGTGTTCTCGTTTTGCCCAAG
OGDH-ZNF138chr744664164chr764291829514KYVKVMHKFGAAAACCCCAAAAGTGTACATAAGCTC
OGDH-ZNF138chr744664164chr764291829614YVKVMHKFAACCCCAAAAGTGTACATAAGCTC
OGDH-ZNF138chr744664164chr764291829817KVMHKFSNSAAAAGTGTACATAAGCTCTGTGTTCTC

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptideFusionNEoAntigen RNA sequence
OGDH-ZNF138chr744664164chr7642918291025MHKFSNSNRHKIRHTGTACATAAGCTCTGTGTTCTCGTTTTGCCCAAGACCTTTGGCTAG
OGDH-ZNF138chr744664164chr7642918291126HKFSNSNRHKIRHTECATAAGCTCTGTGTTCTCGTTTTGCCCAAGACCTTTGGCTAGAGC
OGDH-ZNF138chr744664164chr764291829318CNKYVKVMHKFSNSNTGGCTGGAAAACCCCAAAAGTGTACATAAGCTCTGTGTTCTCGTT
OGDH-ZNF138chr744664164chr764291829419NKYVKVMHKFSNSNRCTGGAAAACCCCAAAAGTGTACATAAGCTCTGTGTTCTCGTTTTG
OGDH-ZNF138chr744664164chr764291829621YVKVMHKFSNSNRHKAACCCCAAAAGTGTACATAAGCTCTGTGTTCTCGTTTTGCCCAAG
OGDH-ZNF138chr744664164chr764291829722VKVMHKFSNSNRHKICCCAAAAGTGTACATAAGCTCTGTGTTCTCGTTTTGCCCAAGACC
OGDH-ZNF138chr744664164chr764291829823KVMHKFSNSNRHKIRAAAAGTGTACATAAGCTCTGTGTTCTCGTTTTGCCCAAGACCTTT
OGDH-ZNF138chr744664164chr764291829924VMHKFSNSNRHKIRHAGTGTACATAAGCTCTGTGTTCTCGTTTTGCCCAAGACCTTTGGC

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Information of the samples that have these potential fusion neoantigens of OGDH-ZNF138

check button These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.
Cancer typeFusion geneHchrHbpHenstTchrTbpTenstSample
Non-CancerOGDH-ZNF138chr744664164ENST00000222673chr764291829ENST00000307355TCGA-BH-A1EV-11A

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Potential target of CAR-T therapy development for OGDH-ZNF138

check button Predicted 3D structure. We used RoseTTAFold.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features


* Minus value of BPloci means that the break point is located before the CDS.
- In-frame and retained 'Transmembrane'.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

check button Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.
HgeneHchrHbpHenstTgeneTchrTbpTenstDeepLoc result

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Related Drugs to OGDH-ZNF138

check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to OGDH-ZNF138

check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource