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Fusion Protein:PLAUR-CREB3L2 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: PLAUR-CREB3L2 | FusionPDB ID: 65925 | FusionGDB2.0 ID: 65925 | Hgene | Tgene | Gene symbol | PLAUR | CREB3L2 | Gene ID | 5329 | 64764 |
Gene name | plasminogen activator, urokinase receptor | cAMP responsive element binding protein 3 like 2 | |
Synonyms | CD87|U-PAR|UPAR|URKR | BBF2H7 | |
Cytomap | 19q13.31 | 7q33 | |
Type of gene | protein-coding | protein-coding | |
Description | urokinase plasminogen activator surface receptormonocyte activation antigen Mo3u-plasminogen activator receptor form 2urokinase-type plasminogen activator (uPA) receptor | cyclic AMP-responsive element-binding protein 3-like protein 2B-ZIB transcription factorBBF2 human homolog on chromosome 7FUS/BBF2H7 proteinTCAG_1951439basic transcription factor 2cAMP-responsive element-binding protein 3-like protein 2 | |
Modification date | 20200329 | 20200313 | |
UniProtAcc | . | Q70SY1 Main function of 5'-partner protein: FUNCTION: Transcription factor involved in unfolded protein response (UPR). In the absence of endoplasmic reticulum (ER) stress, inserted into ER membranes, with N-terminal DNA-binding and transcription activation domains oriented toward the cytosolic face of the membrane. In response to ER stress, transported to the Golgi, where it is cleaved in a site-specific manner by resident proteases S1P/MBTPS1 and S2P/MBTPS2. The released N-terminal cytosolic domain is translocated to the nucleus to effect transcription of specific target genes. Plays a critical role in chondrogenesis by activating the transcription of SEC23A, which promotes the transport and secretion of cartilage matrix proteins, and possibly that of ER biogenesis-related genes (By similarity). In a neuroblastoma cell line, protects cells from ER stress-induced death (PubMed:17178827). In vitro activates transcription of target genes via direct binding to the CRE site (PubMed:17178827). {ECO:0000250|UniProtKB:Q8BH52, ECO:0000269|PubMed:17178827}. | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000221264, ENST00000339082, ENST00000340093, ENST00000601723, | ENST00000468127, ENST00000330387, ENST00000452463, ENST00000456390, ENST00000458726, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 9 X 6 X 8=432 | 5 X 10 X 5=250 |
# samples | 10 | 9 | |
** MAII score | log2(10/432*10)=-2.11103131238874 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/250*10)=-1.47393118833241 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: PLAUR [Title/Abstract] AND CREB3L2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: PLAUR [Title/Abstract] AND CREB3L2 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | PLAUR(44169468)-CREB3L2(137600758), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | PLAUR-CREB3L2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PLAUR-CREB3L2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PLAUR-CREB3L2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PLAUR-CREB3L2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PLAUR | GO:0043388 | positive regulation of DNA binding | 22984561 |
Tgene | CREB3L2 | GO:0045893 | positive regulation of transcription, DNA-templated | 17178827 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:44169468/chr7:137600758) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000339082 | PLAUR | chr19 | 44169468 | - | ENST00000330387 | CREB3L2 | chr7 | 137600758 | - | 7097 | 356 | 46 | 1599 | 517 |
ENST00000339082 | PLAUR | chr19 | 44169468 | - | ENST00000456390 | CREB3L2 | chr7 | 137600758 | - | 2035 | 356 | 46 | 1419 | 457 |
ENST00000339082 | PLAUR | chr19 | 44169468 | - | ENST00000452463 | CREB3L2 | chr7 | 137600758 | - | 800 | 356 | 46 | 783 | 245 |
ENST00000339082 | PLAUR | chr19 | 44169468 | - | ENST00000458726 | CREB3L2 | chr7 | 137600758 | - | 787 | 356 | 46 | 783 | 245 |
ENST00000601723 | PLAUR | chr19 | 44169468 | - | ENST00000330387 | CREB3L2 | chr7 | 137600758 | - | 7084 | 343 | 33 | 1586 | 517 |
ENST00000601723 | PLAUR | chr19 | 44169468 | - | ENST00000456390 | CREB3L2 | chr7 | 137600758 | - | 2022 | 343 | 33 | 1406 | 457 |
ENST00000601723 | PLAUR | chr19 | 44169468 | - | ENST00000452463 | CREB3L2 | chr7 | 137600758 | - | 787 | 343 | 33 | 770 | 245 |
ENST00000601723 | PLAUR | chr19 | 44169468 | - | ENST00000458726 | CREB3L2 | chr7 | 137600758 | - | 774 | 343 | 33 | 770 | 245 |
ENST00000340093 | PLAUR | chr19 | 44169468 | - | ENST00000330387 | CREB3L2 | chr7 | 137600758 | - | 7281 | 540 | 170 | 1783 | 537 |
ENST00000340093 | PLAUR | chr19 | 44169468 | - | ENST00000456390 | CREB3L2 | chr7 | 137600758 | - | 2219 | 540 | 170 | 1603 | 477 |
ENST00000340093 | PLAUR | chr19 | 44169468 | - | ENST00000452463 | CREB3L2 | chr7 | 137600758 | - | 984 | 540 | 170 | 967 | 265 |
ENST00000340093 | PLAUR | chr19 | 44169468 | - | ENST00000458726 | CREB3L2 | chr7 | 137600758 | - | 971 | 540 | 170 | 967 | 265 |
ENST00000221264 | PLAUR | chr19 | 44169468 | - | ENST00000330387 | CREB3L2 | chr7 | 137600758 | - | 7478 | 737 | 367 | 1980 | 537 |
ENST00000221264 | PLAUR | chr19 | 44169468 | - | ENST00000456390 | CREB3L2 | chr7 | 137600758 | - | 2416 | 737 | 367 | 1800 | 477 |
ENST00000221264 | PLAUR | chr19 | 44169468 | - | ENST00000452463 | CREB3L2 | chr7 | 137600758 | - | 1181 | 737 | 367 | 1164 | 265 |
ENST00000221264 | PLAUR | chr19 | 44169468 | - | ENST00000458726 | CREB3L2 | chr7 | 137600758 | - | 1168 | 737 | 367 | 1164 | 265 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000339082 | ENST00000330387 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.000433583 | 0.9995664 |
ENST00000339082 | ENST00000456390 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.004329003 | 0.99567103 |
ENST00000339082 | ENST00000452463 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.015472943 | 0.9845271 |
ENST00000339082 | ENST00000458726 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.014421614 | 0.9855784 |
ENST00000601723 | ENST00000330387 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.000424396 | 0.99957556 |
ENST00000601723 | ENST00000456390 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.00397638 | 0.99602365 |
ENST00000601723 | ENST00000452463 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.01609773 | 0.9839023 |
ENST00000601723 | ENST00000458726 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.014683683 | 0.98531634 |
ENST00000340093 | ENST00000330387 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.000452728 | 0.9995473 |
ENST00000340093 | ENST00000456390 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.004710333 | 0.9952897 |
ENST00000340093 | ENST00000452463 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.0110072 | 0.98899275 |
ENST00000340093 | ENST00000458726 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.010180344 | 0.9898197 |
ENST00000221264 | ENST00000330387 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.000464582 | 0.99953544 |
ENST00000221264 | ENST00000456390 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.004868004 | 0.99513197 |
ENST00000221264 | ENST00000452463 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.009960945 | 0.99003905 |
ENST00000221264 | ENST00000458726 | PLAUR | chr19 | 44169468 | - | CREB3L2 | chr7 | 137600758 | - | 0.009463705 | 0.9905363 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for PLAUR-CREB3L2 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
PLAUR | chr19 | 44169468 | CREB3L2 | chr7 | 137600758 | 343 | 103 | VVCGLDLCNQGNSDEVESEKWYLSTD |
PLAUR | chr19 | 44169468 | CREB3L2 | chr7 | 137600758 | 356 | 103 | VVCGLDLCNQGNSDEVESEKWYLSTD |
PLAUR | chr19 | 44169468 | CREB3L2 | chr7 | 137600758 | 540 | 123 | VVCGLDLCNQGNSDEVESEKWYLSTD |
PLAUR | chr19 | 44169468 | CREB3L2 | chr7 | 137600758 | 737 | 123 | VVCGLDLCNQGNSDEVESEKWYLSTD |
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Potential FusionNeoAntigen Information of PLAUR-CREB3L2 in HLA I |
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PLAUR-CREB3L2_44169468_137600758.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B58:02 | NSDEVESEKW | 0.9969 | 0.9031 | 11 | 21 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B58:01 | NSDEVESEKW | 0.9909 | 0.9067 | 11 | 21 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B44:03 | SDEVESEKWY | 0.9768 | 0.9154 | 12 | 22 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B44:03 | NSDEVESEKWY | 0.9861 | 0.8846 | 11 | 22 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B57:04 | NSDEVESEKW | 0.9972 | 0.6265 | 11 | 21 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B57:02 | NSDEVESEKW | 0.9938 | 0.7706 | 11 | 21 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B44:07 | SDEVESEKWY | 0.9768 | 0.9154 | 12 | 22 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B44:26 | SDEVESEKWY | 0.9768 | 0.9154 | 12 | 22 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B44:13 | SDEVESEKWY | 0.9768 | 0.9154 | 12 | 22 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B44:26 | NSDEVESEKWY | 0.9861 | 0.8846 | 11 | 22 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B44:07 | NSDEVESEKWY | 0.9861 | 0.8846 | 11 | 22 |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 | HLA-B44:13 | NSDEVESEKWY | 0.9861 | 0.8846 | 11 | 22 |
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Potential FusionNeoAntigen Information of PLAUR-CREB3L2 in HLA II |
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![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
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Fusion breakpoint peptide structures of PLAUR-CREB3L2 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
4817 | LCNQGNSDEVESEK | PLAUR | CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 737 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of PLAUR-CREB3L2 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 4817 | LCNQGNSDEVESEK | -5.36039 | -5.47219 |
HLA-B14:02 | 3BVN | 4817 | LCNQGNSDEVESEK | -3.82511 | -4.86821 |
HLA-B52:01 | 3W39 | 4817 | LCNQGNSDEVESEK | -8.43933 | -8.55113 |
HLA-B52:01 | 3W39 | 4817 | LCNQGNSDEVESEK | -5.85103 | -6.89413 |
HLA-A11:01 | 4UQ2 | 4817 | LCNQGNSDEVESEK | -5.97327 | -7.01637 |
HLA-A24:02 | 5HGA | 4817 | LCNQGNSDEVESEK | -7.16463 | -8.20773 |
HLA-A24:02 | 5HGA | 4817 | LCNQGNSDEVESEK | -5.49314 | -5.60494 |
HLA-B44:05 | 3DX8 | 4817 | LCNQGNSDEVESEK | -6.36463 | -6.47643 |
HLA-B44:05 | 3DX8 | 4817 | LCNQGNSDEVESEK | -4.58559 | -5.62869 |
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Vaccine Design for the FusionNeoAntigens of PLAUR-CREB3L2 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 11 | 21 | NSDEVESEKW | ACTCTGATGAGGTGGAAAGTGAGAAATGGT |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 11 | 22 | NSDEVESEKWY | ACTCTGATGAGGTGGAAAGTGAGAAATGGTACC |
PLAUR-CREB3L2 | chr19 | 44169468 | chr7 | 137600758 | 12 | 22 | SDEVESEKWY | CTGATGAGGTGGAAAGTGAGAAATGGTACC |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
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Information of the samples that have these potential fusion neoantigens of PLAUR-CREB3L2 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
Non-Cancer | PLAUR-CREB3L2 | chr19 | 44169468 | ENST00000221264 | chr7 | 137600758 | ENST00000330387 | ERR315424 |
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Potential target of CAR-T therapy development for PLAUR-CREB3L2 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | CREB3L2 | chr19:44169468 | chr7:137600758 | ENST00000330387 | 1 | 12 | 380_400 | 0 | 521.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein | |
Tgene | CREB3L2 | chr19:44169468 | chr7:137600758 | ENST00000452463 | 1 | 4 | 380_400 | 0 | 249.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein | |
Tgene | CREB3L2 | chr19:44169468 | chr7:137600758 | ENST00000456390 | 1 | 10 | 380_400 | 0 | 461.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to PLAUR-CREB3L2 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to PLAUR-CREB3L2 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |