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Fusion Protein:PPP2R4-NEK6

Fusion Gene and Fusion Protein Summary

Fusion gene summary

Fusion partner gene information	Fusion gene name: PPP2R4-NEK6
	FusionPDB ID: 68054
	FusionGDB2.0 ID: 68054
		Hgene	Tgene
	Gene symbol	PPP2R4	NEK6
	Gene ID	5524	10783
	Gene name	protein phosphatase 2 phosphatase activator	NIMA related kinase 6
	Synonyms	PP2A\|PPP2R4\|PR53	SID6-1512
	Cytomap	9q34.11	9q33.3
	Type of gene	protein-coding	protein-coding
	Description	serine/threonine-protein phosphatase 2A activatorPP2A phosphatase activatorPP2A subunit B' isoform PR53phosphotyrosyl phosphatase activatorprotein phosphatase 2 regulatory subunit 4protein phosphatase 2A activator, regulatory subunit 4protein phosph	serine/threonine-protein kinase Nek6NIMA (never in mitosis gene a)-related kinase 6never in mitosis A-related kinase 6nimA-related protein kinase 6protein kinase SID6-1512putative serine-threonine protein kinase
	Modification date	20200329	20200327
	UniProtAcc	.	Q9HC98 Main function of 5'-partner protein: FUNCTION: Protein kinase which plays an important role in mitotic cell cycle progression (PubMed:14563848). Required for chromosome segregation at metaphase-anaphase transition, robust mitotic spindle formation and cytokinesis (PubMed:19414596). Phosphorylates ATF4, CIR1, PTN, RAD26L, RBBP6, RPS7, RPS6KB1, TRIP4, STAT3 and histones H1 and H3 (PubMed:12054534, PubMed:20873783). Phosphorylates KIF11 to promote mitotic spindle formation (PubMed:19001501). Involved in G2/M phase cell cycle arrest induced by DNA damage (PubMed:18728393). Inhibition of activity results in apoptosis. May contribute to tumorigenesis by suppressing p53/TP53-induced cancer cell senescence (PubMed:21099361). Phosphorylates EML4 at 'Ser-144', promoting its dissociation from microtubules during mitosis which is required for efficient chromosome congression (PubMed:31409757). {ECO:0000269\|PubMed:12054534, ECO:0000269\|PubMed:14563848, ECO:0000269\|PubMed:18728393, ECO:0000269\|PubMed:19001501, ECO:0000269\|PubMed:19414596, ECO:0000269\|PubMed:20873783, ECO:0000269\|PubMed:21099361, ECO:0000269\|PubMed:31409757}.
Ensembl transtripts involved in fusion gene	ENST ids	ENST00000435305, ENST00000337738, ENST00000347048, ENST00000348141, ENST00000355007, ENST00000357197, ENST00000358994, ENST00000393370, ENST00000414510, ENST00000419582, ENST00000423100, ENST00000432124, ENST00000432651, ENST00000434095, ENST00000435132, ENST00000436883, ENST00000452489, ENST00000524946,	ENST00000320246, ENST00000373600, ENST00000373603, ENST00000394199, ENST00000539416, ENST00000540326, ENST00000545174, ENST00000546191,
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)	* DoF score	10 X 9 X 8=720	2 X 2 X 2=8
	# samples	12	2
	** MAII score	log2(12/720*10)=-2.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(2/8*10)=1.32192809488736
Fusion gene context	PubMed: PPP2R4 [Title/Abstract] AND NEK6 [Title/Abstract] AND fusion [Title/Abstract]
Fusion neoantigen context	PubMed: PPP2R4 [Title/Abstract] AND NEK6 [Title/Abstract] AND neoantigen [Title/Abstract]
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)	PPP2R4(131904831)-NEK6(127074788), # samples:1
Anticipated loss of major functional domain due to fusion event.	PPP2R4-NEK6 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PPP2R4-NEK6 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PPP2R4-NEK6 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PPP2R4-NEK6 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PPP2R4-NEK6 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. PPP2R4-NEK6 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. PPP2R4-NEK6 seems lost the major protein functional domain in Tgene partner, which is a epigenetic factor due to the frame-shifted ORF. PPP2R4-NEK6 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. PPP2R4-NEK6 seems lost the major protein functional domain in Tgene partner, which is a kinase due to the frame-shifted ORF.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Hgene	PPP2R4	GO:0032515	negative regulation of phosphoprotein phosphatase activity	16916641
Hgene	PPP2R4	GO:0032516	positive regulation of phosphoprotein phosphatase activity	16916641
Hgene	PPP2R4	GO:0035307	positive regulation of protein dephosphorylation	16916641
Hgene	PPP2R4	GO:0035308	negative regulation of protein dephosphorylation	16916641
Hgene	PPP2R4	GO:0043065	positive regulation of apoptotic process	17333320
Hgene	PPP2R4	GO:0043666	regulation of phosphoprotein phosphatase activity	16916641
Tgene	NEK6	GO:0006468	protein phosphorylation	12840024
Tgene	NEK6	GO:0007059	chromosome segregation	14563848
Tgene	NEK6	GO:0018105	peptidyl-serine phosphorylation	19001501
Tgene	NEK6	GO:0030071	regulation of mitotic metaphase/anaphase transition	14563848
Tgene	NEK6	GO:0046777	protein autophosphorylation	14563848\|20873783

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr9:131904831/chr9:127074788)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Retention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

Fusion gene breakpoints across PPP2R4 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across NEK6 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Fusion Amino Acid Sequences

Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	Seq length (transcript)	BP loci (transcript)	Predicted start (transcript)	Predicted stop (transcript)	Seq length (amino acids)
ENST00000358994	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	3449	1106	8	1957	649
ENST00000358994	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	4318	1106	8	1957	649
ENST00000358994	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	4318	1106	8	1957	649
ENST00000358994	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	4318	1106	8	1957	649
ENST00000358994	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	3449	1106	8	1957	649
ENST00000358994	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	3449	1106	8	1957	649
ENST00000358994	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	3449	1106	8	1957	649
ENST00000358994	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	3449	1106	8	1957	649
ENST00000393370	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	3520	1177	169	2028	619
ENST00000393370	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	4389	1177	169	2028	619
ENST00000393370	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	4389	1177	169	2028	619
ENST00000393370	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	4389	1177	169	2028	619
ENST00000393370	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	3520	1177	169	2028	619
ENST00000393370	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	3520	1177	169	2028	619
ENST00000393370	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	3520	1177	169	2028	619
ENST00000393370	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	3520	1177	169	2028	619
ENST00000337738	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	3609	1266	153	2117	654
ENST00000337738	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	4478	1266	153	2117	654
ENST00000337738	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	4478	1266	153	2117	654
ENST00000337738	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	4478	1266	153	2117	654
ENST00000337738	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	3609	1266	153	2117	654
ENST00000337738	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	3609	1266	153	2117	654
ENST00000337738	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	3609	1266	153	2117	654
ENST00000337738	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	3609	1266	153	2117	654
ENST00000348141	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	3520	1177	151	2028	625
ENST00000348141	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	4389	1177	151	2028	625
ENST00000348141	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	4389	1177	151	2028	625
ENST00000348141	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	4389	1177	151	2028	625
ENST00000348141	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	3520	1177	151	2028	625
ENST00000348141	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	3520	1177	151	2028	625
ENST00000348141	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	3520	1177	151	2028	625
ENST00000348141	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	3520	1177	151	2028	625
ENST00000452489	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	3555	1212	99	2063	654
ENST00000452489	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	4424	1212	99	2063	654
ENST00000452489	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	4424	1212	99	2063	654
ENST00000452489	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	4424	1212	99	2063	654
ENST00000452489	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	3555	1212	99	2063	654
ENST00000452489	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	3555	1212	99	2063	654
ENST00000452489	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	3555	1212	99	2063	654
ENST00000452489	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	3555	1212	99	2063	654
ENST00000357197	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	3342	999	78	1850	590
ENST00000357197	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	4211	999	78	1850	590
ENST00000357197	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	4211	999	78	1850	590
ENST00000357197	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	4211	999	78	1850	590
ENST00000357197	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	3342	999	78	1850	590
ENST00000357197	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	3342	999	78	1850	590
ENST00000357197	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	3342	999	78	1850	590
ENST00000357197	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	3342	999	78	1850	590
ENST00000347048	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	2772	429	78	1280	400
ENST00000347048	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	3641	429	78	1280	400
ENST00000347048	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	3641	429	78	1280	400
ENST00000347048	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	3641	429	78	1280	400
ENST00000347048	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	2772	429	78	1280	400
ENST00000347048	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	2772	429	78	1280	400
ENST00000347048	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	2772	429	78	1280	400
ENST00000347048	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	2772	429	78	1280	400
ENST00000355007	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	3298	955	73	1806	577
ENST00000355007	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	4167	955	73	1806	577
ENST00000355007	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	4167	955	73	1806	577
ENST00000355007	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	4167	955	73	1806	577
ENST00000355007	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	3298	955	73	1806	577
ENST00000355007	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	3298	955	73	1806	577
ENST00000355007	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	3298	955	73	1806	577
ENST00000355007	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	3298	955	73	1806	577
ENST00000423100	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	2719	376	265	1227	320
ENST00000423100	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	3588	376	265	1227	320
ENST00000423100	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	3588	376	265	1227	320
ENST00000423100	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	3588	376	265	1227	320
ENST00000423100	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	2719	376	265	1227	320
ENST00000423100	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	2719	376	265	1227	320
ENST00000423100	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	2719	376	265	1227	320
ENST00000423100	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	2719	376	265	1227	320
ENST00000524946	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	3439	1096	1036	1947	303
ENST00000524946	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	4308	1096	1036	1947	303
ENST00000524946	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	4308	1096	1036	1947	303
ENST00000524946	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	4308	1096	1036	1947	303
ENST00000524946	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	3439	1096	1036	1947	303
ENST00000524946	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	3439	1096	1036	1947	303
ENST00000524946	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	3439	1096	1036	1947	303
ENST00000524946	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	3439	1096	1036	1947	303
ENST00000436883	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000436883	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	3464	252	9	1103	364
ENST00000436883	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	3464	252	9	1103	364
ENST00000436883	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	3464	252	9	1103	364
ENST00000436883	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000436883	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000436883	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000436883	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000414510	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000414510	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	3464	252	9	1103	364
ENST00000414510	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	3464	252	9	1103	364
ENST00000414510	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	3464	252	9	1103	364
ENST00000414510	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000414510	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000414510	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000414510	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	2595	252	9	1103	364
ENST00000432124	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	2503	160	52	1011	319
ENST00000432124	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	3372	160	52	1011	319
ENST00000432124	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	3372	160	52	1011	319
ENST00000432124	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	3372	160	52	1011	319
ENST00000432124	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	2503	160	52	1011	319
ENST00000432124	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	2503	160	52	1011	319
ENST00000432124	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	2503	160	52	1011	319
ENST00000432124	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	2503	160	52	1011	319
ENST00000419582	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	2724	381	273	1232	319
ENST00000419582	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	3593	381	273	1232	319
ENST00000419582	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	3593	381	273	1232	319
ENST00000419582	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	3593	381	273	1232	319
ENST00000419582	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	2724	381	273	1232	319
ENST00000419582	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	2724	381	273	1232	319
ENST00000419582	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	2724	381	273	1232	319
ENST00000419582	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	2724	381	273	1232	319
ENST00000432651	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	2580	237	72	1088	338
ENST00000432651	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	3449	237	72	1088	338
ENST00000432651	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	3449	237	72	1088	338
ENST00000432651	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	3449	237	72	1088	338
ENST00000432651	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	2580	237	72	1088	338
ENST00000432651	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	2580	237	72	1088	338
ENST00000432651	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	2580	237	72	1088	338
ENST00000432651	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	2580	237	72	1088	338
ENST00000435132	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	2575	232	106	1083	325
ENST00000435132	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	3444	232	106	1083	325
ENST00000435132	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	3444	232	106	1083	325
ENST00000435132	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	3444	232	106	1083	325
ENST00000435132	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	2575	232	106	1083	325
ENST00000435132	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	2575	232	106	1083	325
ENST00000435132	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	2575	232	106	1083	325
ENST00000435132	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	2575	232	106	1083	325
ENST00000434095	PPP2R4	chr9	131904831	-	ENST00000540326	NEK6	chr9	127074788	+	2604	261	147	1112	321
ENST00000434095	PPP2R4	chr9	131904831	-	ENST00000373603	NEK6	chr9	127074788	+	3473	261	147	1112	321
ENST00000434095	PPP2R4	chr9	131904831	-	ENST00000373600	NEK6	chr9	127074788	+	3473	261	147	1112	321
ENST00000434095	PPP2R4	chr9	131904831	-	ENST00000320246	NEK6	chr9	127074788	+	3473	261	147	1112	321
ENST00000434095	PPP2R4	chr9	131904831	-	ENST00000545174	NEK6	chr9	127074788	+	2604	261	147	1112	321
ENST00000434095	PPP2R4	chr9	131904831	-	ENST00000394199	NEK6	chr9	127074788	+	2604	261	147	1112	321
ENST00000434095	PPP2R4	chr9	131904831	-	ENST00000546191	NEK6	chr9	127074788	+	2604	261	147	1112	321
ENST00000434095	PPP2R4	chr9	131904831	-	ENST00000539416	NEK6	chr9	127074788	+	2604	261	147	1112	321

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	No-coding score	Coding score
ENST00000358994	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003104036	0.9968959
ENST00000358994	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003118164	0.99688184
ENST00000358994	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003118164	0.99688184
ENST00000358994	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003118164	0.99688184
ENST00000358994	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003104036	0.9968959
ENST00000358994	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003104036	0.9968959
ENST00000358994	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003104036	0.9968959
ENST00000358994	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003104036	0.9968959
ENST00000393370	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003340271	0.99665976
ENST00000393370	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003469175	0.99653083
ENST00000393370	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003469175	0.99653083
ENST00000393370	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003469175	0.99653083
ENST00000393370	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003340271	0.99665976
ENST00000393370	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003340271	0.99665976
ENST00000393370	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003340271	0.99665976
ENST00000393370	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003340271	0.99665976
ENST00000337738	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00185037	0.99814963
ENST00000337738	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001923698	0.9980763
ENST00000337738	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001923698	0.9980763
ENST00000337738	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001923698	0.9980763
ENST00000337738	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00185037	0.99814963
ENST00000337738	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00185037	0.99814963
ENST00000337738	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00185037	0.99814963
ENST00000337738	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00185037	0.99814963
ENST00000348141	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002469478	0.9975305
ENST00000348141	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002532082	0.9974679
ENST00000348141	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002532082	0.9974679
ENST00000348141	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002532082	0.9974679
ENST00000348141	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002469478	0.9975305
ENST00000348141	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002469478	0.9975305
ENST00000348141	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002469478	0.9975305
ENST00000348141	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002469478	0.9975305
ENST00000452489	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00189577	0.9981042
ENST00000452489	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001930188	0.9980698
ENST00000452489	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001930188	0.9980698
ENST00000452489	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001930188	0.9980698
ENST00000452489	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00189577	0.9981042
ENST00000452489	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00189577	0.9981042
ENST00000452489	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00189577	0.9981042
ENST00000452489	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00189577	0.9981042
ENST00000357197	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002748257	0.9972517
ENST00000357197	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002836117	0.99716383
ENST00000357197	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002836117	0.99716383
ENST00000357197	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002836117	0.99716383
ENST00000357197	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002748257	0.9972517
ENST00000357197	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002748257	0.9972517
ENST00000357197	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002748257	0.9972517
ENST00000357197	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002748257	0.9972517
ENST00000347048	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003636904	0.9963631
ENST00000347048	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00412167	0.99587834
ENST00000347048	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00412167	0.99587834
ENST00000347048	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00412167	0.99587834
ENST00000347048	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003636904	0.9963631
ENST00000347048	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003636904	0.9963631
ENST00000347048	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003636904	0.9963631
ENST00000347048	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003636904	0.9963631
ENST00000355007	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001901083	0.9980989
ENST00000355007	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001952637	0.99804735
ENST00000355007	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001952637	0.99804735
ENST00000355007	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001952637	0.99804735
ENST00000355007	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001901083	0.9980989
ENST00000355007	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001901083	0.9980989
ENST00000355007	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001901083	0.9980989
ENST00000355007	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.001901083	0.9980989
ENST00000423100	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003098891	0.99690115
ENST00000423100	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003579646	0.9964204
ENST00000423100	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003579646	0.9964204
ENST00000423100	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003579646	0.9964204
ENST00000423100	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003098891	0.99690115
ENST00000423100	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003098891	0.99690115
ENST00000423100	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003098891	0.99690115
ENST00000423100	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003098891	0.99690115
ENST00000524946	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00228445	0.9977156
ENST00000524946	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002491258	0.99750876
ENST00000524946	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002491258	0.99750876
ENST00000524946	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.002491258	0.99750876
ENST00000524946	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00228445	0.9977156
ENST00000524946	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00228445	0.9977156
ENST00000524946	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00228445	0.9977156
ENST00000524946	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00228445	0.9977156
ENST00000436883	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000436883	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003760961	0.99623907
ENST00000436883	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003760961	0.99623907
ENST00000436883	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003760961	0.99623907
ENST00000436883	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000436883	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000436883	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000436883	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000414510	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000414510	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003760961	0.99623907
ENST00000414510	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003760961	0.99623907
ENST00000414510	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003760961	0.99623907
ENST00000414510	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000414510	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000414510	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000414510	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003460617	0.99653935
ENST00000432124	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003292633	0.9967073
ENST00000432124	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003662062	0.9963379
ENST00000432124	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003662062	0.9963379
ENST00000432124	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003662062	0.9963379
ENST00000432124	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003292633	0.9967073
ENST00000432124	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003292633	0.9967073
ENST00000432124	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003292633	0.9967073
ENST00000432124	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003292633	0.9967073
ENST00000419582	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.004047499	0.9959525
ENST00000419582	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00422005	0.99578
ENST00000419582	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00422005	0.99578
ENST00000419582	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.00422005	0.99578
ENST00000419582	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.004047499	0.9959525
ENST00000419582	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.004047499	0.9959525
ENST00000419582	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.004047499	0.9959525
ENST00000419582	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.004047499	0.9959525
ENST00000432651	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003425522	0.9965745
ENST00000432651	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003659871	0.99634016
ENST00000432651	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003659871	0.99634016
ENST00000432651	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003659871	0.99634016
ENST00000432651	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003425522	0.9965745
ENST00000432651	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003425522	0.9965745
ENST00000432651	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003425522	0.9965745
ENST00000432651	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003425522	0.9965745
ENST00000435132	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003601362	0.99639857
ENST00000435132	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003985294	0.9960147
ENST00000435132	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003985294	0.9960147
ENST00000435132	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003985294	0.9960147
ENST00000435132	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003601362	0.99639857
ENST00000435132	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003601362	0.99639857
ENST00000435132	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003601362	0.99639857
ENST00000435132	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003601362	0.99639857
ENST00000434095	ENST00000540326	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003458879	0.9965411
ENST00000434095	ENST00000373603	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003772911	0.99622715
ENST00000434095	ENST00000373600	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003772911	0.99622715
ENST00000434095	ENST00000320246	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003772911	0.99622715
ENST00000434095	ENST00000545174	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003458879	0.9965411
ENST00000434095	ENST00000394199	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003458879	0.9965411
ENST00000434095	ENST00000546191	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003458879	0.9965411
ENST00000434095	ENST00000539416	PPP2R4	chr9	131904831	-	NEK6	chr9	127074788	+	0.003458879	0.9965411

Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for PPP2R4-NEK6

+/-13 AA sequence from the breakpoints of the fusion protein sequences.

Hgene	Hchr	Hbp	Tgene	Tchr	Tbp	Length(fusion protein)	BP in fusion protein	Peptide
PPP2R4	chr9	131904831	NEK6	chr9	127074788	1096	20	WAPSLDSWPAFSSRHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	1106	366	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	1177	336	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	1177	342	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	1212	371	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	1266	371	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	160	36	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	232	42	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	237	55	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	252	81	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	261	38	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	376	37	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	381	36	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	429	117	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	955	294	KVNQGLIRMYKAERHPNTLSFRCSLA
PPP2R4	chr9	131904831	NEK6	chr9	127074788	999	307	KVNQGLIRMYKAERHPNTLSFRCSLA

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Potential FusionNeoAntigen Information of PPP2R4-NEK6 in HLA I

Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.

PPP2R4-NEK6_131904831_127074788.msa

Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)

Fusion gene	Hchr	Hbp	Tgene	Tchr	Tbp	HLA I	FusionNeoAntigen peptide	Binding score	Immunogenic score	Neoantigen start (at BP 13)	Neoantigen end (at BP 13)
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:13	AERHPNTL	0.9122	0.9093	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:02	SRHPNTLSF	0.9998	0.649	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:05	SRHPNTLSF	0.9998	0.8996	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:04	SRHPNTLSF	0.9998	0.7954	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:04	ERHPNTLSF	0.9993	0.7378	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:05	ERHPNTLSF	0.9989	0.7901	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B14:01	ERHPNTLSF	0.9964	0.6703	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B14:02	ERHPNTLSF	0.9964	0.6703	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B14:02	SRHPNTLSF	0.9938	0.676	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B14:01	SRHPNTLSF	0.9938	0.676	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:01	ERHPNTLSF	0.9812	0.8837	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:01	SRHPNTLSF	0.98	0.8756	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:17	FSSRHPNTL	0.978	0.8921	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B38:02	ERHPNTLSF	0.9669	0.9075	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:16	FSSRHPNTL	0.9593	0.5426	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:06	SRHPNTLSF	0.9589	0.6983	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:06	ERHPNTLSF	0.9572	0.7278	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A30:08	SSRHPNTLS	0.9562	0.6639	11	20
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B38:01	ERHPNTLSF	0.9521	0.8836	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B38:02	SRHPNTLSF	0.9425	0.9352	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B38:01	SRHPNTLSF	0.9178	0.929	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:03	SRHPNTLSF	0.9116	0.7204	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:18	SRHPNTLSF	0.9	0.6879	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B45:01	AERHPNTLS	0.8999	0.8653	11	20
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B58:02	FSSRHPNTL	0.8718	0.7391	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:10	SRHPNTLSF	0.8302	0.5639	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B14:02	FSSRHPNTL	0.8178	0.6533	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B14:01	FSSRHPNTL	0.8178	0.6533	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:18	ERHPNTLSF	0.7399	0.545	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B47:01	SRHPNTLSF	0.6896	0.5927	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:37	SRHPNTLSF	0.6844	0.626	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:03	ERHPNTLSF	0.6645	0.5829	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B07:10	SRHPNTLSF	0.083	0.5494	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B50:01	AERHPNTLS	0.0073	0.6261	11	20
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:02	SRHPNTLSFR	0.9999	0.5667	12	22
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:05	SRHPNTLSFR	0.9999	0.7757	12	22
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:01	SSRHPNTLSF	0.9997	0.8386	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B57:01	SSRHPNTLSF	0.9997	0.9209	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:04	SRHPNTLSFR	0.9996	0.6542	12	22
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B58:02	SSRHPNTLSF	0.9993	0.8899	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:04	SSRHPNTLSF	0.9991	0.7762	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:02	SSRHPNTLSF	0.9991	0.6057	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:05	SSRHPNTLSF	0.999	0.8868	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:17	SSRHPNTLSF	0.9984	0.9029	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:16	SSRHPNTLSF	0.9983	0.5665	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:04	AERHPNTLSF	0.9979	0.6816	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B57:03	SSRHPNTLSF	0.9978	0.9405	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B44:03	AERHPNTLSF	0.9978	0.9491	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:05	AERHPNTLSF	0.9977	0.7228	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:03	SSRHPNTLSF	0.9968	0.7538	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B58:01	SSRHPNTLSF	0.9964	0.8473	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:18	SSRHPNTLSF	0.9941	0.6991	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:01	YKAERHPNTL	0.9904	0.7972	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B07:10	SSRHPNTLSF	0.9894	0.5138	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B13:01	AERHPNTLSF	0.9881	0.8946	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:10	YKAERHPNTL	0.9749	0.5733	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:03	AERHPNTLSF	0.9728	0.6109	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B14:01	YKAERHPNTL	0.9653	0.6718	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B14:02	YKAERHPNTL	0.9653	0.6718	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:18	AERHPNTLSF	0.9603	0.5734	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A30:08	SSRHPNTLSF	0.9454	0.7118	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:37	YKAERHPNTL	0.8752	0.6564	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A32:13	SSRHPNTLSF	0.8479	0.9403	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:13	AERHPNTLSF	0.8354	0.8816	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B07:10	AERHPNTLSF	0.7862	0.5368	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B18:01	AERHPNTLSF	0.6565	0.8401	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:04	KAERHPNTLSF	0.9998	0.6627	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:02	FSSRHPNTLSF	0.9998	0.5984	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:04	FSSRHPNTLSF	0.9998	0.7457	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:02	KAERHPNTLSF	0.9998	0.5222	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:05	FSSRHPNTLSF	0.9997	0.874	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:05	KAERHPNTLSF	0.9997	0.7325	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B57:01	KAERHPNTLSF	0.9996	0.9584	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:17	FSSRHPNTLSF	0.9995	0.888	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B58:02	FSSRHPNTLSF	0.9994	0.8293	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B57:03	FSSRHPNTLSF	0.9992	0.8967	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:16	FSSRHPNTLSF	0.999	0.6254	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B57:03	KAERHPNTLSF	0.9983	0.975	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B58:02	KAERHPNTLSF	0.9982	0.86	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:18	FSSRHPNTLSF	0.9974	0.6519	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B58:01	FSSRHPNTLSF	0.9973	0.7771	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:17	KAERHPNTLSF	0.997	0.8268	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:16	KAERHPNTLSF	0.9969	0.6769	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A31:06	SLDSWPAFSSR	0.9885	0.5638	3	14
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B58:01	KAERHPNTLSF	0.9875	0.8876	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A74:03	SLDSWPAFSSR	0.9709	0.7998	3	14
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A74:11	SLDSWPAFSSR	0.9709	0.7998	3	14
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A74:09	SLDSWPAFSSR	0.9709	0.7998	3	14
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A31:02	SLDSWPAFSSR	0.9677	0.791	3	14
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:08	SSRHPNTL	0.9991	0.9003	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:12	SSRHPNTL	0.991	0.7972	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:08	AERHPNTL	0.9672	0.8095	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C04:07	KAERHPNTL	0.9998	0.7875	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:14	SRHPNTLSF	0.9998	0.8264	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C04:10	KAERHPNTL	0.9997	0.7487	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C05:09	KAERHPNTL	0.9997	0.85	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:08	FSSRHPNTL	0.9997	0.8922	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C15:04	FSSRHPNTL	0.9995	0.7962	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:95	SRHPNTLSF	0.9995	0.6153	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:15	KAERHPNTL	0.9995	0.929	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:07	FSSRHPNTL	0.9994	0.9535	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:05	SRHPNTLSF	0.9994	0.9336	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C15:06	FSSRHPNTL	0.9994	0.8549	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:19	FSSRHPNTL	0.9993	0.9823	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:27	SRHPNTLSF	0.999	0.9108	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C01:17	KAERHPNTL	0.9987	0.8571	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:14	ERHPNTLSF	0.9986	0.7471	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:29	SRHPNTLSF	0.9984	0.9356	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C04:10	FSSRHPNTL	0.9983	0.659	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C05:09	FSSRHPNTL	0.9982	0.9011	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:12	FSSRHPNTL	0.9962	0.7973	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:14	SRHPNTLSF	0.996	0.9662	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:13	SRHPNTLSF	0.9959	0.8748	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C04:06	FSSRHPNTL	0.9958	0.7254	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:03	FSSRHPNTL	0.9956	0.9764	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:04	FSSRHPNTL	0.9952	0.9853	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:03	SRHPNTLSF	0.9948	0.9195	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:07	KAERHPNTL	0.9937	0.9643	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C08:13	FSSRHPNTL	0.9926	0.8729	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C08:04	FSSRHPNTL	0.9926	0.8729	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:27	ERHPNTLSF	0.9926	0.8565	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C15:06	KAERHPNTL	0.9923	0.8948	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:95	ERHPNTLSF	0.991	0.6406	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C08:15	FSSRHPNTL	0.9909	0.9235	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C01:17	FSSRHPNTL	0.9899	0.8171	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:08	KAERHPNTL	0.9874	0.8983	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:09	ERHPNTLSF	0.9869	0.6468	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:09	SRHPNTLSF	0.9864	0.5748	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:12	ERHPNTLSF	0.9843	0.892	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:05	ERHPNTLSF	0.9821	0.9201	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:16	FSSRHPNTL	0.9818	0.9082	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:12	SRHPNTLSF	0.9814	0.886	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:19	KAERHPNTL	0.9805	0.9834	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:13	ERHPNTLSF	0.9759	0.8363	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:29	ERHPNTLSF	0.9749	0.8716	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:05	FSSRHPNTL	0.9623	0.8638	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:03	ERHPNTLSF	0.9552	0.8284	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:13	FSSRHPNTL	0.9522	0.7737	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:29	FSSRHPNTL	0.9507	0.8484	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C04:06	KAERHPNTL	0.9477	0.8677	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:05	ERHPNTLSF	0.9427	0.854	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C04:14	FSSRHPNTL	0.9376	0.6455	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:27	FSSRHPNTL	0.9284	0.881	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:19	FSSRHPNTL	0.9252	0.5634	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:46	SRHPNTLSF	0.9157	0.7115	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:05	SRHPNTLSF	0.9155	0.859	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C08:03	FSSRHPNTL	0.9099	0.941	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C02:06	FSSRHPNTL	0.9004	0.9266	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:95	FSSRHPNTL	0.8912	0.5787	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:14	FSSRHPNTL	0.8897	0.9277	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C01:30	KAERHPNTL	0.8868	0.9232	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C01:30	FSSRHPNTL	0.8863	0.8965	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:19	SRHPNTLSF	0.8763	0.5916	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C04:14	KAERHPNTL	0.8705	0.8473	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:04	KAERHPNTL	0.8664	0.9342	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:13	KAERHPNTL	0.8664	0.9342	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B73:01	ERHPNTLSF	0.8593	0.6401	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:80	SRHPNTLSF	0.8522	0.8294	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:67	SRHPNTLSF	0.8522	0.8294	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:10	SRHPNTLSF	0.84	0.8798	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:46	ERHPNTLSF	0.8173	0.7248	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:19	ERHPNTLSF	0.8083	0.6458	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:67	ERHPNTLSF	0.8046	0.8231	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:80	ERHPNTLSF	0.8046	0.8231	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:10	ERHPNTLSF	0.8037	0.8889	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B73:01	SRHPNTLSF	0.8011	0.6617	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:21	SRHPNTLSF	0.801	0.8888	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B14:03	FSSRHPNTL	0.7816	0.7484	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:10	FSSRHPNTL	0.7434	0.725	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C02:06	KAERHPNTL	0.7219	0.9124	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B14:03	KAERHPNTL	0.703	0.6795	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:21	ERHPNTLSF	0.6427	0.7851	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C12:12	KAERHPNTL	0.5994	0.845	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:08	KAERHPNTL	0.5746	0.6511	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:03	KAERHPNTL	0.5632	0.9677	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B14:03	SRHPNTLSF	0.441	0.8252	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:16	SRHPNTLSF	0.4259	0.9366	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C04:14	SRHPNTLSF	0.4081	0.8715	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B14:03	ERHPNTLSF	0.2772	0.8617	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C12:16	ERHPNTLSF	0.2452	0.9422	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:03	SRHPNTLSF	0.0916	0.9832	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:14	SRHPNTLSFR	0.9999	0.7525	12	22
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:07	SSRHPNTLSF	0.9997	0.6253	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:16	SSRHPNTLSF	0.9995	0.9335	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C15:04	SSRHPNTLSF	0.9992	0.8715	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:14	SSRHPNTLSF	0.9991	0.8081	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:12	SSRHPNTLSF	0.9977	0.8363	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:14	AERHPNTLSF	0.9976	0.7198	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C12:16	AERHPNTLSF	0.9973	0.9336	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:03	SRHPNTLSFR	0.997	0.7899	12	22
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:19	SSRHPNTLSF	0.9969	0.6036	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:05	SSRHPNTLSF	0.9964	0.9302	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:80	SSRHPNTLSF	0.9963	0.8659	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:67	SSRHPNTLSF	0.9963	0.8659	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:10	SSRHPNTLSF	0.9962	0.8975	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:15	YKAERHPNTL	0.9955	0.9417	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:95	SSRHPNTLSF	0.9951	0.6223	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:46	SSRHPNTLSF	0.9946	0.7506	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:27	SSRHPNTLSF	0.9936	0.9263	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:09	YKAERHPNTL	0.9925	0.521	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:27	AERHPNTLSF	0.9924	0.8875	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:67	AERHPNTLSF	0.9922	0.8499	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:80	AERHPNTLSF	0.9922	0.8499	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:19	AERHPNTLSF	0.9914	0.6427	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:95	AERHPNTLSF	0.9911	0.6308	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:05	AERHPNTLSF	0.9894	0.9438	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:29	AERHPNTLSF	0.9892	0.8779	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:13	AERHPNTLSF	0.9888	0.8447	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:10	AERHPNTLSF	0.9879	0.9026	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:12	YKAERHPNTL	0.9878	0.8077	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:46	AERHPNTLSF	0.9863	0.7456	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:29	SSRHPNTLSF	0.9794	0.9322	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:29	YKAERHPNTL	0.9794	0.9091	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:13	YKAERHPNTL	0.979	0.8898	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:04	YKAERHPNTL	0.9734	0.9316	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:13	YKAERHPNTL	0.9734	0.9316	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:03	SSRHPNTLSF	0.9702	0.9074	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:05	YKAERHPNTL	0.9661	0.7761	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:03	YKAERHPNTL	0.9582	0.9625	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:13	SSRHPNTLSF	0.9547	0.8997	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:03	AERHPNTLSF	0.9296	0.7631	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:08	AERHPNTLSF	0.9273	0.8709	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B14:03	YKAERHPNTL	0.9192	0.6251	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:12	AERHPNTLSF	0.8536	0.8867	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:46	SRHPNTLSFR	0.7957	0.6816	12	22
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:12	SSRHPNTLSF	0.6953	0.8609	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:16	FSSRHPNTLSF	0.9999	0.9361	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C15:04	FSSRHPNTLSF	0.9998	0.8556	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:14	KAERHPNTLSF	0.9996	0.6777	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:07	FSSRHPNTLSF	0.9995	0.9736	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:67	FSSRHPNTLSF	0.9987	0.874	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:80	FSSRHPNTLSF	0.9987	0.874	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C12:16	KAERHPNTLSF	0.9985	0.9303	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:05	FSSRHPNTLSF	0.998	0.9043	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:19	FSSRHPNTLSF	0.998	0.6269	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:05	KAERHPNTLSF	0.9979	0.9567	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:95	FSSRHPNTLSF	0.9975	0.629	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:27	FSSRHPNTLSF	0.9974	0.9149	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:95	KAERHPNTLSF	0.9971	0.6634	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:29	FSSRHPNTLSF	0.9971	0.8988	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:46	FSSRHPNTLSF	0.9967	0.7865	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:27	KAERHPNTLSF	0.9965	0.9298	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:46	KAERHPNTLSF	0.9965	0.8313	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:19	KAERHPNTLSF	0.996	0.6777	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:10	FSSRHPNTLSF	0.9957	0.9014	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:13	FSSRHPNTLSF	0.9954	0.8886	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:67	KAERHPNTLSF	0.9945	0.9114	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:80	KAERHPNTLSF	0.9945	0.9114	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:03	FSSRHPNTLSF	0.9943	0.8954	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:14	FSSRHPNTLSF	0.9942	0.9562	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:03	KAERHPNTLSF	0.9939	0.7725	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:10	KAERHPNTLSF	0.9939	0.9372	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A31:01	SLDSWPAFSSR	0.9782	0.7356	3	14
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:12	FSSRHPNTLSF	0.8583	0.8268	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B40:04	AERHPNTL	0.9994	0.7182	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:05	SSRHPNTL	0.997	0.9223	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:17	SSRHPNTL	0.9951	0.9513	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C16:04	SSRHPNTL	0.9856	0.923	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C16:02	SSRHPNTL	0.9404	0.991	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:02	AERHPNTL	0.9286	0.9083	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C16:01	SSRHPNTL	0.9267	0.9615	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B07:13	SSRHPNTL	0.8356	0.7203	11	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C04:01	KAERHPNTL	0.9998	0.7875	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:10	SRHPNTLSF	0.9998	0.8932	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:06	SRHPNTLSF	0.9998	0.7611	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:08	SRHPNTLSF	0.9998	0.7996	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C04:03	KAERHPNTL	0.9997	0.8366	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C05:01	KAERHPNTL	0.9997	0.85	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:01	SRHPNTLSF	0.9996	0.6075	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:03	FSSRHPNTL	0.9996	0.9842	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:04	FSSRHPNTL	0.9996	0.9842	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C01:03	KAERHPNTL	0.9995	0.8786	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C18:01	KAERHPNTL	0.9995	0.8096	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:02	KAERHPNTL	0.9995	0.929	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C15:09	FSSRHPNTL	0.9995	0.7962	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:06	ERHPNTLSF	0.9994	0.7195	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:10	ERHPNTLSF	0.9992	0.83	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:67	FSSRHPNTL	0.9991	0.9719	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:05	FSSRHPNTL	0.9991	0.8939	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C15:05	FSSRHPNTL	0.9991	0.8589	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C15:02	FSSRHPNTL	0.999	0.8256	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:17	FSSRHPNTL	0.999	0.9359	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C01:02	KAERHPNTL	0.999	0.8517	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:08	ERHPNTLSF	0.9989	0.7218	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:06	FSSRHPNTL	0.9984	0.9746	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:02	FSSRHPNTL	0.9983	0.9345	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C04:03	FSSRHPNTL	0.9983	0.7527	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C18:01	FSSRHPNTL	0.9982	0.7012	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C05:01	FSSRHPNTL	0.9982	0.9011	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:17	SRHPNTLSF	0.9982	0.9316	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:09	SRHPNTLSF	0.9981	0.8547	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C16:04	FSSRHPNTL	0.997	0.9181	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:03	FSSRHPNTL	0.9962	0.9266	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C04:04	FSSRHPNTL	0.9946	0.6496	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:17	FSSRHPNTL	0.9939	0.9831	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:02	FSSRHPNTL	0.9939	0.9831	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:09	ERHPNTLSF	0.9933	0.7089	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:01	ERHPNTLSF	0.9928	0.6141	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C01:03	FSSRHPNTL	0.9918	0.7844	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C15:05	KAERHPNTL	0.9916	0.8442	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C08:02	FSSRHPNTL	0.9909	0.9235	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:04	FSSRHPNTL	0.9908	0.8256	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C01:02	FSSRHPNTL	0.9908	0.8175	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:02	FSSRHPNTL	0.9897	0.9202	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:03	KAERHPNTL	0.9877	0.9856	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:04	KAERHPNTL	0.9877	0.9856	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C15:02	KAERHPNTL	0.9874	0.8496	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:22	FSSRHPNTL	0.9859	0.6155	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C16:02	FSSRHPNTL	0.9829	0.9858	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:17	KAERHPNTL	0.9816	0.9539	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:08	SRHPNTLSF	0.9798	0.9818	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:31	SRHPNTLSF	0.9786	0.877	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:31	ERHPNTLSF	0.9775	0.8812	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:05	KAERHPNTL	0.9762	0.9299	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:06	FSSRHPNTL	0.9762	0.9749	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:02	SRHPNTLSF	0.9728	0.8796	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:17	FSSRHPNTL	0.9716	0.8766	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C16:01	FSSRHPNTL	0.9688	0.9436	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:67	KAERHPNTL	0.9665	0.9758	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:22	SRHPNTLSF	0.9636	0.705	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A30:01	SSRHPNTLS	0.962	0.7382	11	20
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B58:06	FSSRHPNTL	0.9553	0.6447	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:17	ERHPNTLSF	0.9549	0.9097	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B38:05	ERHPNTLSF	0.9521	0.8836	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C06:06	KAERHPNTL	0.9483	0.9756	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C16:02	KAERHPNTL	0.9334	0.9849	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B38:05	SRHPNTLSF	0.9178	0.929	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:08	FSSRHPNTL	0.9156	0.9656	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C08:01	FSSRHPNTL	0.9099	0.941	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C16:01	KAERHPNTL	0.9098	0.963	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C02:02	FSSRHPNTL	0.9085	0.9468	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C02:10	FSSRHPNTL	0.9085	0.9468	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:01	FSSRHPNTL	0.8878	0.5655	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C06:08	ERHPNTLSF	0.8838	0.9707	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:02	SRHPNTLSF	0.8522	0.8294	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:06	KAERHPNTL	0.8063	0.9813	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:02	ERHPNTLSF	0.8046	0.8231	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B48:02	ERHPNTLSF	0.7958	0.7921	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:04	KAERHPNTL	0.7945	0.8976	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B48:02	SRHPNTLSF	0.7928	0.8945	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:04	ERHPNTLSF	0.7871	0.9304	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B57:02	FSSRHPNTL	0.7818	0.7216	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:04	SRHPNTLSF	0.7805	0.9506	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:22	ERHPNTLSF	0.7089	0.6869	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:30	FSSRHPNTL	0.7044	0.7421	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B35:13	FSSRHPNTL	0.6417	0.8383	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:67	ERHPNTLSF	0.6403	0.9464	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B39:11	SRHPNTLSF	0.6306	0.8173	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:09	SRHPNTLSF	0.6245	0.5194	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:11	ERHPNTLSF	0.6227	0.8138	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:67	SRHPNTLSF	0.6204	0.9729	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C17:01	FSSRHPNTL	0.608	0.578	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:01	KAERHPNTL	0.5632	0.9677	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B07:13	FSSRHPNTL	0.5268	0.7007	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B07:13	KAERHPNTL	0.5211	0.7431	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:53	SRHPNTLSF	0.5198	0.7986	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:54	SRHPNTLSF	0.5177	0.7726	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B08:12	SRHPNTLSF	0.4658	0.689	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B18:03	ERHPNTLSF	0.4589	0.8504	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:68	SRHPNTLSF	0.4469	0.5529	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B08:12	ERHPNTLSF	0.437	0.6332	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B18:07	ERHPNTLSF	0.4055	0.8155	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:06	SRHPNTLSF	0.3967	0.9891	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:02	SRHPNTLSF	0.3755	0.9485	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C04:04	ERHPNTLSF	0.3727	0.8235	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C04:04	SRHPNTLSF	0.3627	0.8271	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C17:01	KAERHPNTL	0.3478	0.7604	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C06:06	ERHPNTLSF	0.262	0.9801	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B35:13	KAERHPNTL	0.2594	0.8824	10	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:02	SRHPNTLSF	0.2592	0.9843	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:17	SRHPNTLSF	0.2592	0.9843	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C14:02	SRHPNTLSF	0.2022	0.9431	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C14:03	SRHPNTLSF	0.2022	0.9431	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:54	ERHPNTLSF	0.154	0.6612	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C06:17	ERHPNTLSF	0.1485	0.9825	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C06:02	ERHPNTLSF	0.1485	0.9825	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C18:01	ERHPNTLSF	0.0658	0.7834	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C18:01	SRHPNTLSF	0.0447	0.8733	12	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B50:05	AERHPNTLS	0.0073	0.6261	11	20
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B50:04	AERHPNTLS	0.0073	0.6261	11	20
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:08	SRHPNTLSFR	0.9998	0.6883	12	22
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:10	SRHPNTLSFR	0.9998	0.7974	12	22
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B57:04	SSRHPNTLSF	0.9998	0.8242	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:125	SSRHPNTLSF	0.9997	0.8386	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:24	SSRHPNTLSF	0.9997	0.8045	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:35	SSRHPNTLSF	0.9997	0.826	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:34	SSRHPNTLSF	0.9997	0.8386	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:33	SSRHPNTLSF	0.9997	0.8386	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B57:10	SSRHPNTLSF	0.9997	0.9209	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:02	SSRHPNTLSF	0.9996	0.9523	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:54	SSRHPNTLSF	0.9995	0.7714	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B58:06	SSRHPNTLSF	0.9994	0.7764	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B15:68	SSRHPNTLSF	0.9994	0.5799	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C15:09	SSRHPNTLSF	0.9992	0.8715	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:10	SSRHPNTLSF	0.9991	0.8869	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:53	AERHPNTLSF	0.9987	0.6828	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:22	SSRHPNTLSF	0.9986	0.7056	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:08	SSRHPNTLSF	0.9986	0.7724	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:67	SSRHPNTLSF	0.9986	0.9745	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C02:10	SSRHPNTLSF	0.9982	0.9731	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C02:02	SSRHPNTLSF	0.9982	0.9731	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:06	SRHPNTLSFR	0.9981	0.619	12	22
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:10	AERHPNTLSF	0.9981	0.8174	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B44:07	AERHPNTLSF	0.9978	0.9491	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B44:13	AERHPNTLSF	0.9978	0.9491	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B44:26	AERHPNTLSF	0.9978	0.9491	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:54	AERHPNTLSF	0.9977	0.6414	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:06	SSRHPNTLSF	0.9976	0.7414	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:08	AERHPNTLSF	0.9976	0.6565	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:06	AERHPNTLSF	0.9975	0.6608	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:17	SSRHPNTLSF	0.9974	0.9865	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:02	SSRHPNTLSF	0.9974	0.9865	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:09	AERHPNTLSF	0.9971	0.6646	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B57:02	SSRHPNTLSF	0.9971	0.9157	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:50	AERHPNTLSF	0.9969	0.8429	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C06:02	AERHPNTLSF	0.9968	0.9708	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C06:17	AERHPNTLSF	0.9968	0.9708	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:17	SSRHPNTLSF	0.9967	0.9432	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:06	SSRHPNTLSF	0.9965	0.9881	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:02	SSRHPNTLSF	0.9963	0.8659	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:01	SSRHPNTLSF	0.996	0.6173	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:09	SSRHPNTLSF	0.9957	0.8303	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:02	YKAERHPNTL	0.9955	0.9417	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:22	AERHPNTLSF	0.994	0.6891	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:02	AERHPNTLSF	0.9922	0.8499	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:08	SSRHPNTLSF	0.992	0.9862	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:01	AERHPNTLSF	0.9913	0.6161	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:02	YKAERHPNTL	0.9909	0.8473	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:31	YKAERHPNTL	0.9904	0.7968	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B40:04	AERHPNTLSF	0.9904	0.6947	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:12	AERHPNTLSF	0.9889	0.7299	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C06:08	AERHPNTLSF	0.9881	0.9692	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:04	YKAERHPNTL	0.9868	0.9803	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:03	YKAERHPNTL	0.9868	0.9803	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:17	AERHPNTLSF	0.9857	0.9197	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:67	YKAERHPNTL	0.9819	0.9691	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C16:02	SSRHPNTLSF	0.9819	0.9915	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C16:01	SSRHPNTLSF	0.9753	0.9711	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A32:01	SSRHPNTLSF	0.9663	0.9073	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C08:01	YKAERHPNTL	0.9582	0.9625	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:04	YKAERHPNTL	0.9535	0.8833	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B48:02	AERHPNTLSF	0.9518	0.8125	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:11	YKAERHPNTL	0.9478	0.5631	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:06	YKAERHPNTL	0.9262	0.9737	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B35:28	AERHPNTLSF	0.8933	0.8413	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B39:02	AERHPNTLSF	0.8918	0.8859	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B18:11	AERHPNTLSF	0.8792	0.8115	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B15:09	YKAERHPNTL	0.8274	0.6527	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B07:13	YKAERHPNTL	0.8103	0.7088	9	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B18:05	AERHPNTLSF	0.6565	0.8401	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B18:08	AERHPNTLSF	0.6304	0.7782	11	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:02	FSSRHPNTLSF	0.9999	0.9358	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C15:09	FSSRHPNTLSF	0.9998	0.8556	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C12:02	FSSRHPNTLSF	0.9998	0.9488	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:10	FSSRHPNTLSF	0.9998	0.8636	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C03:67	FSSRHPNTLSF	0.9998	0.9694	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B58:06	FSSRHPNTLSF	0.9998	0.7339	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:10	KAERHPNTLSF	0.9998	0.7714	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B57:04	FSSRHPNTLSF	0.9998	0.6998	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:08	KAERHPNTLSF	0.9997	0.6415	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:08	FSSRHPNTLSF	0.9997	0.7385	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C02:10	FSSRHPNTLSF	0.9996	0.9738	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:06	FSSRHPNTLSF	0.9996	0.7164	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:22	FSSRHPNTLSF	0.9996	0.6678	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B57:10	KAERHPNTLSF	0.9996	0.9584	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C02:02	FSSRHPNTLSF	0.9996	0.9738	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:06	KAERHPNTLSF	0.9996	0.6661	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:17	FSSRHPNTLSF	0.9995	0.9892	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:02	FSSRHPNTLSF	0.9995	0.9892	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B27:09	KAERHPNTLSF	0.9992	0.7071	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B58:06	KAERHPNTLSF	0.9991	0.7641	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:22	KAERHPNTLSF	0.9991	0.6593	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B27:09	FSSRHPNTLSF	0.999	0.8098	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C03:02	KAERHPNTLSF	0.999	0.9522	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C06:08	FSSRHPNTLSF	0.9988	0.9875	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:02	FSSRHPNTLSF	0.9987	0.874	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:17	FSSRHPNTLSF	0.9986	0.9211	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-B57:02	FSSRHPNTLSF	0.9984	0.896	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C02:02	KAERHPNTLSF	0.9983	0.9467	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C02:10	KAERHPNTLSF	0.9983	0.9467	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B57:04	KAERHPNTLSF	0.9983	0.7635	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:01	KAERHPNTLSF	0.9974	0.6249	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C07:01	FSSRHPNTLSF	0.9974	0.6223	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-B57:02	KAERHPNTLSF	0.9968	0.9141	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-C16:02	FSSRHPNTLSF	0.9962	0.9896	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	HLA-C07:02	KAERHPNTLSF	0.9945	0.9114	10	21
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	HLA-A74:01	SLDSWPAFSSR	0.9709	0.7998	3	14

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Potential FusionNeoAntigen Information of PPP2R4-NEK6 in HLA II

PPP2R4-NEK6_131904831_127074788.msa

Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).

Fusion gene	Hchr	Hbp	Tgene	Tchr	Tbp	HLA II	FusionNeoAntigen peptide	Neoantigen start (at BP 13)	Neoantigen end (at BP 13)
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0437	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0437	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	DRB1-0437	APSLDSWPAFSSRHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0465	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0465	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0473	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0473	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0810	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0812	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0812	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-0828	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1102	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1102	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1102	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1103	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1103	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1108	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1111	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1113	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1113	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1114	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1116	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1116	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1116	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1118	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1118	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1120	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1121	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1121	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1121	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1125	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1134	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1134	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1136	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1136	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1136	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1141	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1142	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1142	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1145	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1148	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1148	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1148	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1155	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1157	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1157	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1159	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1159	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1159	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1163	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1163	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1164	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1165	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1165	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1165	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1167	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1168	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1170	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1170	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1170	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1172	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1172	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1176	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1176	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1182	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1184	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1185	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1185	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1186	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1186	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1186	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1192	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1192	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1192	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1204	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1204	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1204	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1209	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1209	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1209	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1220	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1220	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1301	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1301	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1301	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1302	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1304	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1304	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1304	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1306	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1306	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1308	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1308	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1308	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1309	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1309	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1309	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1315	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1315	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1315	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1316	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1316	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1316	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1317	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1317	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1317	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1318	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1319	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1319	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1319	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1320	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1320	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1320	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1322	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1322	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1322	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1323	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1324	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1324	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1327	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1327	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1327	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1329	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1332	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1334	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1335	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1335	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1335	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1336	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1339	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1341	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1343	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1344	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1344	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1348	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1351	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1351	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1351	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1352	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1352	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1352	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1353	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1353	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1353	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1354	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1356	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1357	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1357	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1357	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1359	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1359	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1359	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1361	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1361	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1361	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1363	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1364	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1364	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1364	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1368	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1368	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1368	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1369	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1369	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1369	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1370	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1370	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1370	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1371	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1371	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1371	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1372	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1372	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1372	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1373	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1374	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1375	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1376	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1378	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1378	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1378	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1379	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1379	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1379	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1380	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1380	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1380	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1383	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1383	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1383	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1384	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1384	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1384	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1385	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1386	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1386	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1386	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1387	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1387	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1387	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1391	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1391	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1391	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1392	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1392	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1392	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1393	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1393	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1393	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1396	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1397	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1398	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1398	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1398	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1399	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1402	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1402	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1403	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1406	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1406	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1406	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1412	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1412	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1412	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1416	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1417	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1417	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1420	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1420	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1420	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1421	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1421	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1424	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1424	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1424	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1429	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1429	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1429	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1430	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1433	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1434	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1437	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1437	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1437	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1440	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1441	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1441	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1452	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1452	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1452	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1457	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1457	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1457	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1467	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1477	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1478	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1478	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1478	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1480	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1480	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1481	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1481	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1483	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1483	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1483	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1484	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1489	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1494	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1494	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1498	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1501	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1501	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1501	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1501	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1502	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1502	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1503	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1503	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1503	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1503	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1504	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1504	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1504	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1504	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	DRB1-1504	APSLDSWPAFSSRHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1505	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1505	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1505	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1505	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1506	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1506	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1506	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1506	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1507	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1507	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1507	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1507	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1508	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1508	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1509	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1509	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1509	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1509	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1510	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1510	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1510	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1510	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1511	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1511	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1512	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1512	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1512	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1512	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1513	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1513	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1513	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1513	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1514	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1514	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1515	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1515	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1516	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1516	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1516	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1516	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1518	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1518	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1518	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1518	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1519	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1519	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1520	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1520	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1520	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1520	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1521	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1521	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1521	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1521	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1522	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1522	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1522	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1522	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1523	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1523	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1523	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1523	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1524	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1524	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1524	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1524	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1525	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1525	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1526	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1526	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1528	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1528	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1528	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1528	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1529	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1529	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1530	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1530	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1531	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1531	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1532	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1532	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1532	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1532	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1533	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1533	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1533	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1533	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1535	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1535	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1535	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1535	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1536	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1536	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1536	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1536	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1537	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1537	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1537	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1537	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1538	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1538	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1539	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1539	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1540	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1540	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1540	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1540	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1541	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1541	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1541	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1541	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1542	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1542	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1542	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1542	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1543	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1543	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1543	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1543	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1544	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1544	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1545	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1545	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1545	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1545	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1546	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1546	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1546	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1546	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1547	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1547	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1548	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1548	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1548	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1548	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1549	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1549	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1549	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1549	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB1-1615	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0103	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0103	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0103	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0106	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0106	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0106	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0106	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0111	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0111	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0202	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0202	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0202	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0202	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0203	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0203	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0203	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0203	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0204	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0204	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0204	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0204	GLIRMYKAERHPNTL	4	19
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1096	DRB5-0204	APSLDSWPAFSSRHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0205	QGLIRMYKAERHPNT	3	18
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0205	NQGLIRMYKAERHPN	2	17
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0205	VNQGLIRMYKAERHP	1	16
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1266	DRB5-0205	GLIRMYKAERHPNTL	4	19

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Fusion breakpoint peptide structures of PPP2R4-NEK6

3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.

File name	BPseq	Hgene	Tgene	Hchr	Hbp	Tchr	Tbp	AAlen
3950	IRMYKAERHPNTLS	PPP2R4	NEK6	chr9	131904831	chr9	127074788	1266

File name	BPseq	Hgene	Tgene	Hchr	Hbp	Tchr	Tbp	AAlen
9185	SWPAFSSRHPNTLS	PPP2R4	NEK6	chr9	131904831	chr9	127074788	1096

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of PPP2R4-NEK6

Virtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.

HLA allele	PDB ID	File name	BPseq	Docking score	Glide score
HLA-B14:02	3BVN	3950	IRMYKAERHPNTLS	-7.9962	-8.1096
HLA-B14:02	3BVN	3950	IRMYKAERHPNTLS	-5.70842	-6.74372
HLA-B52:01	3W39	3950	IRMYKAERHPNTLS	-6.83737	-6.95077
HLA-B52:01	3W39	3950	IRMYKAERHPNTLS	-4.4836	-5.5189
HLA-A11:01	4UQ2	3950	IRMYKAERHPNTLS	-10.0067	-10.1201
HLA-A11:01	4UQ2	3950	IRMYKAERHPNTLS	-9.03915	-10.0745
HLA-A24:02	5HGA	3950	IRMYKAERHPNTLS	-6.56204	-6.67544
HLA-A24:02	5HGA	3950	IRMYKAERHPNTLS	-5.42271	-6.45801
HLA-B44:05	3DX8	3950	IRMYKAERHPNTLS	-7.85648	-8.89178
HLA-B44:05	3DX8	3950	IRMYKAERHPNTLS	-5.3978	-5.5112
HLA-A02:01	6TDR	3950	IRMYKAERHPNTLS	-3.37154	-4.40684
HLA-B14:02	3BVN	9185	SWPAFSSRHPNTLS	-7.15543	-7.26883
HLA-B14:02	3BVN	9185	SWPAFSSRHPNTLS	-4.77435	-5.80965
HLA-B52:01	3W39	9185	SWPAFSSRHPNTLS	-6.80875	-6.92215
HLA-B52:01	3W39	9185	SWPAFSSRHPNTLS	-4.20386	-5.23916
HLA-A11:01	4UQ2	9185	SWPAFSSRHPNTLS	-7.5194	-8.5547
HLA-A11:01	4UQ2	9185	SWPAFSSRHPNTLS	-6.9601	-7.0735
HLA-A24:02	5HGA	9185	SWPAFSSRHPNTLS	-7.52403	-7.63743
HLA-A24:02	5HGA	9185	SWPAFSSRHPNTLS	-5.82433	-6.85963
HLA-B27:05	6PYJ	9185	SWPAFSSRHPNTLS	-3.28285	-4.31815
HLA-B44:05	3DX8	9185	SWPAFSSRHPNTLS	-5.91172	-6.94702
HLA-B44:05	3DX8	9185	SWPAFSSRHPNTLS	-4.24346	-4.35686

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Vaccine Design for the FusionNeoAntigens of PPP2R4-NEK6

mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.

Fusion gene	Hchr	Hbp	Tchr	Tbp	Start in +/-13AA	End in +/-13AA	FusionNeoAntigen peptide sequence	FusionNeoAntigen RNA sequence
PPP2R4-NEK6	chr9	131904831	chr9	127074788	10	19	FSSRHPNTL	TTCTCTTCTAGGCATCCCAACACGCTG
PPP2R4-NEK6	chr9	131904831	chr9	127074788	10	19	KAERHPNTL	AAGGCCGAGAGGCATCCCAACACGCTG
PPP2R4-NEK6	chr9	131904831	chr9	127074788	10	21	FSSRHPNTLSF	TTCTCTTCTAGGCATCCCAACACGCTGTCTTTT
PPP2R4-NEK6	chr9	131904831	chr9	127074788	10	21	KAERHPNTLSF	AAGGCCGAGAGGCATCCCAACACGCTGTCTTTT
PPP2R4-NEK6	chr9	131904831	chr9	127074788	11	19	AERHPNTL	GCCGAGAGGCATCCCAACACGCTG
PPP2R4-NEK6	chr9	131904831	chr9	127074788	11	19	SSRHPNTL	TCTTCTAGGCATCCCAACACGCTG
PPP2R4-NEK6	chr9	131904831	chr9	127074788	11	20	AERHPNTLS	GCCGAGAGGCATCCCAACACGCTGTCT
PPP2R4-NEK6	chr9	131904831	chr9	127074788	11	20	SSRHPNTLS	TCTTCTAGGCATCCCAACACGCTGTCT
PPP2R4-NEK6	chr9	131904831	chr9	127074788	11	21	AERHPNTLSF	GCCGAGAGGCATCCCAACACGCTGTCTTTT
PPP2R4-NEK6	chr9	131904831	chr9	127074788	11	21	SSRHPNTLSF	TCTTCTAGGCATCCCAACACGCTGTCTTTT
PPP2R4-NEK6	chr9	131904831	chr9	127074788	12	21	ERHPNTLSF	GAGAGGCATCCCAACACGCTGTCTTTT
PPP2R4-NEK6	chr9	131904831	chr9	127074788	12	21	SRHPNTLSF	TCTAGGCATCCCAACACGCTGTCTTTT
PPP2R4-NEK6	chr9	131904831	chr9	127074788	12	22	SRHPNTLSFR	TCTAGGCATCCCAACACGCTGTCTTTTCGC
PPP2R4-NEK6	chr9	131904831	chr9	127074788	3	14	SLDSWPAFSSR	TCTCTTGACTCCTGGCCGGCCTTCTCTTCTAGG
PPP2R4-NEK6	chr9	131904831	chr9	127074788	9	19	YKAERHPNTL	TATAAGGCCGAGAGGCATCCCAACACGCTG

mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.

Fusion gene	Hchr	Hbp	Tchr	Tbp	Start in +/-13AA	End in +/-13AA	FusionNeoAntigen peptide	FusionNEoAntigen RNA sequence
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1	16	APSLDSWPAFSSRHP	GCACCATCTCTTGACTCCTGGCCGGCCTTCTCTTCTAGGCATCCC
PPP2R4-NEK6	chr9	131904831	chr9	127074788	1	16	VNQGLIRMYKAERHP	GTGAACCAGGGTCTCATCCGCATGTATAAGGCCGAGAGGCATCCC
PPP2R4-NEK6	chr9	131904831	chr9	127074788	2	17	NQGLIRMYKAERHPN	AACCAGGGTCTCATCCGCATGTATAAGGCCGAGAGGCATCCCAAC
PPP2R4-NEK6	chr9	131904831	chr9	127074788	3	18	QGLIRMYKAERHPNT	CAGGGTCTCATCCGCATGTATAAGGCCGAGAGGCATCCCAACACG
PPP2R4-NEK6	chr9	131904831	chr9	127074788	4	19	GLIRMYKAERHPNTL	GGTCTCATCCGCATGTATAAGGCCGAGAGGCATCCCAACACGCTG

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Information of the samples that have these potential fusion neoantigens of PPP2R4-NEK6

These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.

Cancer type	Fusion gene	Hchr	Hbp	Henst	Tchr	Tbp	Tenst	Sample
LUAD	PPP2R4-NEK6	chr9	131904831	ENST00000337738	chr9	127074788	ENST00000320246	TCGA-MP-A4T6-01A
LUAD	PPP2R4-NEK6	chr9	131904831	ENST00000524946	chr9	127074788	ENST00000320246	TCGA-MP-A4T6-01A

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Potential target of CAR-T therapy development for PPP2R4-NEK6

Predicted 3D structure. We used RoseTTAFold.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features

* Minus value of BPloci means that the break point is located before the CDS.

- In-frame and retained 'Transmembrane'.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.

Hgene

Hchr

Hbp

Henst

Tgene

Tchr

Tbp

Tenst

DeepLoc result

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Related Drugs to PPP2R4-NEK6

Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Drug

Source

PMID

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Related Diseases to PPP2R4-NEK6

Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Disease

Source

PMID

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source

	Fusion Gene and Fusion Protein Summary
	Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)
	Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)
	Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)
	Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)
	Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)
	Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)
	Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)
	Potential target of CAR-T therapy development
	Information on the samples that have these potential fusion neoantigens
	Fusion Protein Targeting Drugs - (Manual Curation)
	Fusion Protein Related diseases - (Manual Curation)