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Center for Computational Systems Medicine
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Fusion Gene and Fusion Protein Summary

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Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)

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Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)

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Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)

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Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)

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Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)

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Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)

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Potential target of CAR-T therapy development

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Information on the samples that have these potential fusion neoantigens

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Fusion Protein Targeting Drugs - (Manual Curation)

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Fusion Protein Related diseases - (Manual Curation)

Fusion Protein:SASH1-ADGB

Fusion Gene and Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: SASH1-ADGB
FusionPDB ID: 79227
FusionGDB2.0 ID: 79230
HgeneTgene
Gene symbol

SASH1

ADGB

Gene ID

23328

79747

Gene nameSAM and SH3 domain containing 1androglobin
SynonymsCAPOK|DUH1|SH3D6A|dJ323M4.1C6orf103|CAPN16
Cytomap

6q24.3-q25.1

6q24.3

Type of geneprotein-codingprotein-coding
DescriptionSAM and SH3 domain-containing protein 1proline-glutamate repeat-containing proteinandroglobincalpain-7-like protein
Modification date2020031320200313
UniProtAcc

O94885

Main function of 5'-partner protein: FUNCTION: Is a positive regulator of NF-kappa-B signaling downstream of TLR4 activation. It acts as a scaffold molecule to assemble a molecular complex that includes TRAF6, MAP3K7, CHUK and IKBKB, thereby facilitating NF-kappa-B signaling activation (PubMed:23776175). Regulates TRAF6 and MAP3K7 ubiquitination (PubMed:23776175). Involved in the regulation of cell mobility (PubMed:23333244, PubMed:23776175, PubMed:25315659). Regulates lipolysaccharide (LPS)-induced endothelial cell migration (PubMed:23776175). Is involved in the regulation of skin pigmentation through the control of melanocyte migration in the epidermis (PubMed:23333244). {ECO:0000269|PubMed:23333244, ECO:0000269|PubMed:23776175, ECO:0000269|PubMed:25315659}.

Q8N7X0

Main function of 5'-partner protein:
Ensembl transtripts involved in fusion geneENST idsENST00000367467, ENST00000367469, 
ENST00000470750, 
ENST00000367493, 
ENST00000367488, ENST00000523560, 
ENST00000397944, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score9 X 6 X 6=3249 X 8 X 5=360
# samples 89
** MAII scorelog2(8/324*10)=-2.01792190799726
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/360*10)=-2
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Fusion gene context

PubMed: SASH1 [Title/Abstract] AND ADGB [Title/Abstract] AND fusion [Title/Abstract]

Fusion neoantigen context

PubMed: SASH1 [Title/Abstract] AND ADGB [Title/Abstract] AND neoantigen [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)SASH1(148664359)-ADGB(146965909), # samples:1
Anticipated loss of major functional domain due to fusion event.SASH1-ADGB seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
SASH1-ADGB seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
SASH1-ADGB seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
SASH1-ADGB seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneSASH1

GO:0000209

protein polyubiquitination

23776175

HgeneSASH1

GO:0010595

positive regulation of endothelial cell migration

23776175

HgeneSASH1

GO:1900044

regulation of protein K63-linked ubiquitination

23776175

HgeneSASH1

GO:1902498

regulation of protein autoubiquitination

23776175



check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr6:148664359/chr6:146965909)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonRetention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

check buttonFusion gene breakpoints across SASH1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across ADGB (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Amino Acid Sequences


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000367467SASH1chr6148664359+ENST00000397944ADGBchr6146965909+564363115753971746

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000367467ENST00000397944SASH1chr6148664359+ADGBchr6146965909+0.0004690320.99953103

check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for SASH1-ADGB

check button +/-13 AA sequence from the breakpoints of the fusion protein sequences.
HgeneHchrHbpTgeneTchrTbpLength(fusion protein)BP in fusion proteinPeptide
SASH1chr6148664359ADGBchr6146965909631156SEAFSRLWTDVMGILHFFEDPEGKIE

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Potential FusionNeoAntigen Information of SASH1-ADGB in HLA I

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
SASH1-ADGB_148664359_146965909.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)
Fusion geneHchrHbpTgeneTchrTbpHLA IFusionNeoAntigen peptideBinding scoreImmunogenic scoreNeoantigen start (at BP 13)Neoantigen end (at BP 13)
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:11RLWTDVMGI0.99530.5171514
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:21RLWTDVMGI0.99490.577514
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:04RLWTDVMGI0.99420.7551514
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:22RLWTDVMGI0.99290.5496514
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:27RLWTDVMGI0.99240.5747514
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:17RLWTDVMGI0.99140.5547514
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:13RLWTDVMGI0.99120.6758514
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:38RLWTDVMGI0.98530.6906514
SASH1-ADGBchr6148664359chr6146965909631HLA-B35:01DVMGILHFF0.98340.7553918
SASH1-ADGBchr6148664359chr6146965909631HLA-B15:02DVMGILHFF0.97340.819918
SASH1-ADGBchr6148664359chr6146965909631HLA-A32:13DVMGILHFF0.62450.8935918
SASH1-ADGBchr6148664359chr6146965909631HLA-B13:02RLWTDVMGI0.14580.8048514
SASH1-ADGBchr6148664359chr6146965909631HLA-B27:07SRLWTDVMGI0.99980.6774414
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:04RLWTDVMGIL0.98980.7023515
SASH1-ADGBchr6148664359chr6146965909631HLA-B27:07SRLWTDVMGIL0.99990.5545415
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:07RLWTDVMGI0.99530.6187514
SASH1-ADGBchr6148664359chr6146965909631HLA-B15:31DVMGILHFF0.98320.7337918
SASH1-ADGBchr6148664359chr6146965909631HLA-B15:21DVMGILHFF0.97570.7903918
SASH1-ADGBchr6148664359chr6146965909631HLA-B27:03SRLWTDVMGI0.99890.7996414
SASH1-ADGBchr6148664359chr6146965909631HLA-A25:01DVMGILHF0.99960.8416917
SASH1-ADGBchr6148664359chr6146965909631HLA-A25:01DVMGILHFF0.9990.824918
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:14RLWTDVMGI0.99510.5387514
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:06RLWTDVMGI0.99490.577514
SASH1-ADGBchr6148664359chr6146965909631HLA-A02:03RLWTDVMGI0.99210.6605514
SASH1-ADGBchr6148664359chr6146965909631HLA-B35:23DVMGILHFF0.98350.7635918
SASH1-ADGBchr6148664359chr6146965909631HLA-B35:77DVMGILHFF0.98340.7553918
SASH1-ADGBchr6148664359chr6146965909631HLA-B35:20DVMGILHFF0.97910.7912918
SASH1-ADGBchr6148664359chr6146965909631HLA-A32:01RLWTDVMGI0.9770.9817514
SASH1-ADGBchr6148664359chr6146965909631HLA-B35:24DVMGILHFF0.96810.7601918
SASH1-ADGBchr6148664359chr6146965909631HLA-B15:13DVMGILHFF0.94160.6103918
SASH1-ADGBchr6148664359chr6146965909631HLA-B35:30DVMGILHFF0.93230.6494918
SASH1-ADGBchr6148664359chr6146965909631HLA-B35:17DVMGILHFF0.93230.6494918
SASH1-ADGBchr6148664359chr6146965909631HLA-A68:02DVMGILHFF0.92080.6348918
SASH1-ADGBchr6148664359chr6146965909631HLA-B18:04DVMGILHFF0.78160.7707918
SASH1-ADGBchr6148664359chr6146965909631HLA-B18:07DVMGILHFF0.60580.7031918
SASH1-ADGBchr6148664359chr6146965909631HLA-B15:08DVMGILHFF0.39050.6946918
SASH1-ADGBchr6148664359chr6146965909631HLA-B15:11DVMGILHFF0.37160.7025918
SASH1-ADGBchr6148664359chr6146965909631HLA-B35:43DVMGILHFF0.35320.7019918
SASH1-ADGBchr6148664359chr6146965909631HLA-B27:06SRLWTDVMGI0.99990.8011414
SASH1-ADGBchr6148664359chr6146965909631HLA-B27:09SRLWTDVMGI0.99980.7967414
SASH1-ADGBchr6148664359chr6146965909631HLA-A25:01TDVMGILHFF0.70280.8346818

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Potential FusionNeoAntigen Information of SASH1-ADGB in HLA II

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
SASH1-ADGB_148664359_146965909.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).
Fusion geneHchrHbpTgeneTchrTbpHLA IIFusionNeoAntigen peptideNeoantigen start (at BP 13)Neoantigen end (at BP 13)
SASH1-ADGBchr6148664359chr6146965909631DRB1-0455MGILHFFEDPEGKIE1126
SASH1-ADGBchr6148664359chr6146965909631DRB1-0465MGILHFFEDPEGKIE1126
SASH1-ADGBchr6148664359chr6146965909631DRB1-0473MGILHFFEDPEGKIE1126
SASH1-ADGBchr6148664359chr6146965909631DRB1-0473VMGILHFFEDPEGKI1025

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Fusion breakpoint peptide structures of SASH1-ADGB

check button3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.
File nameBPseqHgeneTgeneHchrHbpTchrTbpAAlen
5818LWTDVMGILHFFEDSASH1ADGBchr6148664359chr6146965909631

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of SASH1-ADGB

check buttonVirtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.
HLA allelePDB IDFile nameBPseqDocking scoreGlide score
HLA-B14:023BVN5818LWTDVMGILHFFED-7.53815-7.64995
HLA-B14:023BVN5818LWTDVMGILHFFED-4.77984-5.82294
HLA-B52:013W395818LWTDVMGILHFFED-6.67991-7.72301
HLA-B52:013W395818LWTDVMGILHFFED-5.75801-5.86981
HLA-A11:014UQ25818LWTDVMGILHFFED-7.62198-8.66508
HLA-A24:025HGA5818LWTDVMGILHFFED-7.89771-8.00951
HLA-A24:025HGA5818LWTDVMGILHFFED-7.85593-8.89903
HLA-B44:053DX85818LWTDVMGILHFFED-7.82576-7.93756
HLA-B44:053DX85818LWTDVMGILHFFED-5.46197-6.50507

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Vaccine Design for the FusionNeoAntigens of SASH1-ADGB

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptide sequenceFusionNeoAntigen RNA sequence
SASH1-ADGBchr6148664359chr6146965909414SRLWTDVMGICTCTGGACCGACGTGATGGGTATCCTGCAT
SASH1-ADGBchr6148664359chr6146965909415SRLWTDVMGILCTCTGGACCGACGTGATGGGTATCCTGCATTTT
SASH1-ADGBchr6148664359chr6146965909514RLWTDVMGITGGACCGACGTGATGGGTATCCTGCAT
SASH1-ADGBchr6148664359chr6146965909515RLWTDVMGILTGGACCGACGTGATGGGTATCCTGCATTTT
SASH1-ADGBchr6148664359chr6146965909818TDVMGILHFFGTGATGGGTATCCTGCATTTTTTTGAGGAC
SASH1-ADGBchr6148664359chr6146965909917DVMGILHFATGGGTATCCTGCATTTTTTTGAG
SASH1-ADGBchr6148664359chr6146965909918DVMGILHFFATGGGTATCCTGCATTTTTTTGAGGAC

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptideFusionNEoAntigen RNA sequence
SASH1-ADGBchr6148664359chr61469659091025VMGILHFFEDPEGKIGGTATCCTGCATTTTTTTGAGGACCCTGAAGGAAAGATTGAGTTA
SASH1-ADGBchr6148664359chr61469659091126MGILHFFEDPEGKIEATCCTGCATTTTTTTGAGGACCCTGAAGGAAAGATTGAGTTACCA

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Information of the samples that have these potential fusion neoantigens of SASH1-ADGB

check button These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.
Cancer typeFusion geneHchrHbpHenstTchrTbpTenstSample
PRADSASH1-ADGBchr6148664359ENST00000367467chr6146965909ENST00000397944TCGA-YJ-A8SW-01A

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Potential target of CAR-T therapy development for SASH1-ADGB

check button Predicted 3D structure. We used RoseTTAFold.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features


* Minus value of BPloci means that the break point is located before the CDS.
- In-frame and retained 'Transmembrane'.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

check button Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.
HgeneHchrHbpHenstTgeneTchrTbpTenstDeepLoc result

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Related Drugs to SASH1-ADGB

check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to SASH1-ADGB

check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneSASH1C2675711Dyschromatosis Universalis Hereditaria 16CTD_human;GENOMICS_ENGLAND;UNIPROT
HgeneSASH1C3492944Lentiginosis Profusa1ORPHANET