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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>12626_12626_1_CALU-LAP3_CALU_chr7_128407709_ENST00000249364_LAP3_chr4_17600079_ENST00000226299_length(amino acids)=441AA_BP=281
MDLRQFLMCLSLCTAFALSKPTEKKDRVHHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGKIVSKIDGDKDGFVTV
DELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVLDDPDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFL
HPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEETKDWILPSDYDHAEAEA
RHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY

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>12626_12626_2_CALU-LAP3_CALU_chr7_128407709_ENST00000249364_LAP3_chr4_17600079_ENST00000606142_length(amino acids)=441AA_BP=281
MDLRQFLMCLSLCTAFALSKPTEKKDRVHHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGKIVSKIDGDKDGFVTV
DELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVLDDPDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFL
HPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEETKDWILPSDYDHAEAEA
RHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY

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>12626_12626_3_CALU-LAP3_CALU_chr7_128407709_ENST00000449187_LAP3_chr4_17600079_ENST00000226299_length(amino acids)=441AA_BP=281
MDLRQFLMCLSLCTAFALSKPTEKKDRVHHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGMIVDKIDADKDGFVTE
GELKSWIKHAQKKYIYDNVENQWQEFDMNQDGLISWDEYRNVTYGTYLDDPDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFL
HPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEETKDWILPSDYDHAEAEA
RHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY

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>12626_12626_4_CALU-LAP3_CALU_chr7_128407709_ENST00000449187_LAP3_chr4_17600079_ENST00000606142_length(amino acids)=441AA_BP=281
MDLRQFLMCLSLCTAFALSKPTEKKDRVHHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGMIVDKIDADKDGFVTE
GELKSWIKHAQKKYIYDNVENQWQEFDMNQDGLISWDEYRNVTYGTYLDDPDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFL
HPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEETKDWILPSDYDHAEAEA
RHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY

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>12626_12626_5_CALU-LAP3_CALU_chr7_128407709_ENST00000479257_LAP3_chr4_17600079_ENST00000226299_length(amino acids)=472AA_BP=312
MVSFERKQKVDILTISFLSAYNQMKETDLIIMDLRQFLMCLSLCTAFALSKPTEKKDRVHHEPQLSDKVHNDAQSFDYDHDAFLGAEEAK
TFDQLTPEESKERLGKIVSKIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVLDDPDPDDGFNY
KQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVE
FRDKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGV
FTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRK

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>12626_12626_6_CALU-LAP3_CALU_chr7_128407709_ENST00000479257_LAP3_chr4_17600079_ENST00000606142_length(amino acids)=472AA_BP=312
MVSFERKQKVDILTISFLSAYNQMKETDLIIMDLRQFLMCLSLCTAFALSKPTEKKDRVHHEPQLSDKVHNDAQSFDYDHDAFLGAEEAK
TFDQLTPEESKERLGKIVSKIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVLDDPDPDDGFNY
KQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVE
FRDKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGV
FTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRK

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>12626_12626_7_CALU-LAP3_CALU_chr7_128407709_ENST00000538546_LAP3_chr4_17600079_ENST00000226299_length(amino acids)=290AA_BP=130
MMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFR
DKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFT
NSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGM

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>12626_12626_8_CALU-LAP3_CALU_chr7_128407709_ENST00000538546_LAP3_chr4_17600079_ENST00000606142_length(amino acids)=290AA_BP=130
MMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFR
DKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFT
NSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGM

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>12626_12626_9_CALU-LAP3_CALU_chr7_128407709_ENST00000542996_LAP3_chr4_17600079_ENST00000226299_length(amino acids)=472AA_BP=312
MVSFERKQKVDILTISFLSAYNQMKETDLIIMDLRQFLMCLSLCTAFALSKPTEKKDRVHHEPQLSDKVHNDAQSFDYDHDAFLGAEEAK
TFDQLTPEESKERLGMIVDKIDADKDGFVTEGELKSWIKHAQKKYIYDNVENQWQEFDMNQDGLISWDEYRNVTYGTYLDDPDPDDGFNY
KQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVE
FRDKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGV
FTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRK

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>12626_12626_10_CALU-LAP3_CALU_chr7_128407709_ENST00000542996_LAP3_chr4_17600079_ENST00000606142_length(amino acids)=472AA_BP=312
MVSFERKQKVDILTISFLSAYNQMKETDLIIMDLRQFLMCLSLCTAFALSKPTEKKDRVHHEPQLSDKVHNDAQSFDYDHDAFLGAEEAK
TFDQLTPEESKERLGMIVDKIDADKDGFVTEGELKSWIKHAQKKYIYDNVENQWQEFDMNQDGLISWDEYRNVTYGTYLDDPDPDDGFNY
KQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVE
FRDKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQNKVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGV
FTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRK

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