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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>13825_13825_1_CCDC50-LSAMP_CCDC50_chr3_191087825_ENST00000392455_LSAMP_chr3_116163802_ENST00000539563_length(amino acids)=610AA_BP=273
MRLQTCSSPSPSRPARLSVSSLPPYWTAPVHFRAPDIWYRLGPGTRSRWPRRGSWAASLVPRGPSPAALVTSPCPPDPLRSPACEPCRPD
FAPRPALLLRSGPRSAPAVTGKPALKGQPGPWPGMAEVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNVQRNRLVQHDL
QVAKQLQEEDLKAQAQLQKRYKDLEQQDCEIAQEIQEKLAIEAERRRIQEKKDEDIARLLQEKELQEEKKRKKHFPEFPATRAYADSYYY
EDGGLPVRSVDFNRGTDNITVRQGDTAILRCVVEDKNSKVAWLNRSGIIFAGHDKWSLDPRVELEKRHSLEYSLRIQKVDVYDEGSYTCS
VQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLVCMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANE
VSSADVKQVKVTVNYPPTITESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEIKSTEGQSSLTVTNVTEEHYGNYTCVA

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>13825_13825_2_CCDC50-LSAMP_CCDC50_chr3_191087825_ENST00000392456_LSAMP_chr3_116163802_ENST00000539563_length(amino acids)=610AA_BP=273
MRLQTCSSPSPSRPARLSVSSLPPYWTAPVHFRAPDIWYRLGPGTRSRWPRRGSWAASLVPRGPSPAALVTSPCPPDPLRSPACEPCRPD
FAPRPALLLRSGPRSAPAVTGKPALKGQPGPWPGMAEVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLASNVQRNRLVQHDL
QVAKQLQEEDLKAQAQLQKRYKDLEQQDCEIAQEIQEKLAIEAERRRIQEKKDEDIARLLQEKELQEEKKRKKHFPEFPATRAYADSYYY
EDGGLPVRSVDFNRGTDNITVRQGDTAILRCVVEDKNSKVAWLNRSGIIFAGHDKWSLDPRVELEKRHSLEYSLRIQKVDVYDEGSYTCS
VQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLVCMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANE
VSSADVKQVKVTVNYPPTITESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEIKSTEGQSSLTVTNVTEEHYGNYTCVA

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