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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>15329_15329_1_CDKAL1-E2F3_CDKAL1_chr6_20739846_ENST00000274695_E2F3_chr6_20488343_ENST00000346618_length(amino acids)=288AA_BP=156
MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAY
GYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGSLQIHLASTQGPIEVYLCPEETET
HSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDL

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>15329_15329_2_CDKAL1-E2F3_CDKAL1_chr6_20739846_ENST00000274695_E2F3_chr6_20488343_ENST00000535432_length(amino acids)=288AA_BP=156
MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAY
GYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGSLQIHLASTQGPIEVYLCPEETET
HSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDL

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>15329_15329_3_CDKAL1-E2F3_CDKAL1_chr6_20739846_ENST00000378610_E2F3_chr6_20488343_ENST00000346618_length(amino acids)=288AA_BP=156
MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAY
GYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGSLQIHLASTQGPIEVYLCPEETET
HSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDL

--------------------------------------------------------------

>15329_15329_4_CDKAL1-E2F3_CDKAL1_chr6_20739846_ENST00000378610_E2F3_chr6_20488343_ENST00000535432_length(amino acids)=288AA_BP=156
MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAY
GYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGSLQIHLASTQGPIEVYLCPEETET
HSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDL

--------------------------------------------------------------

>15329_15329_5_CDKAL1-E2F3_CDKAL1_chr6_20739846_ENST00000378624_E2F3_chr6_20488343_ENST00000346618_length(amino acids)=218AA_BP=86
MLSRRYEGEIPKNICKRKKTVHQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGSLQI
HLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLP

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>15329_15329_6_CDKAL1-E2F3_CDKAL1_chr6_20739846_ENST00000378624_E2F3_chr6_20488343_ENST00000535432_length(amino acids)=218AA_BP=86
MLSRRYEGEIPKNICKRKKTVHQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGSLQI
HLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKDLASTNSGHSDCSVSMGNLSPLASPANLLQQTEDQIPSNLEGPFVNLLP

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