FusionNeoAntigen Logo

Home

Download

Statistics

Examples

Help

Contact

Terms of Use

Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>16483_16483_1_CHIC2-PARN_CHIC2_chr4_54915122_ENST00000263921_PARN_chr16_14530629_ENST00000341484_length(amino acids)=175AA_BP=115
MGRGARRLRMADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPV

--------------------------------------------------------------

>16483_16483_2_CHIC2-PARN_CHIC2_chr4_54915122_ENST00000263921_PARN_chr16_14530629_ENST00000437198_length(amino acids)=200AA_BP=115
MGRGARRLRMADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPV
NVRWLLCGCLCCCCTLGCSMWPVICLSKREASRRTALPHSLKFLTHGNQDLRAANRWCCRCEQEPAGTFGSRTVFNLIKCGMGGVGNQVV

--------------------------------------------------------------

>16483_16483_3_CHIC2-PARN_CHIC2_chr4_54915122_ENST00000512964_PARN_chr16_14530629_ENST00000341484_length(amino acids)=166AA_BP=106
MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC

--------------------------------------------------------------

>16483_16483_4_CHIC2-PARN_CHIC2_chr4_54915122_ENST00000512964_PARN_chr16_14530629_ENST00000437198_length(amino acids)=191AA_BP=106
MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC
LCCCCTLGCSMWPVICLSKREASRRTALPHSLKFLTHGNQDLRAANRWCCRCEQEPAGTFGSRTVFNLIKCGMGGVGNQVVSWGGENRFY

--------------------------------------------------------------